Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G265900 Phaseolus vulgaris HOM05D005824 ORTHO05D007029 0.0e+00 1306.6 707 100.0
VMungo0720G2244 Vigna mungo HOM05D005824 ORTHO05D007029 0.0e+00 1149.0 707 85.6
Glyma.02G192500 Glycine max HOM05D005824 ORTHO05D007029 1.8e-309 1065.4 708 78.8
Glyma.10G084300 Glycine max HOM05D005824 ORTHO05D007029 6.3e-302 1040.4 708 76.8
Lalb_Chr02g0154321 Lupinus albus HOM05D005824 ORTHO05D007029 2.8e-270 935.3 713 69.0
Lj5g0026124 Lotus japonicus HOM05D005824 ORTHO05D007029 6.5e-267 924.1 710 68.2
Lj3g0001001 Lotus japonicus HOM05D005824 ORTHO05D007029 2.3e-264 915.6 710 67.7
Ca_11665_v3 Cicer arietinum L. HOM05D005824 ORTHO05D007029 5.7e-263 911.0 707 67.8
Medtr1g055080 Medicago truncatula HOM05D005824 ORTHO05D007029 2.4e-261 905.6 707 67.8
TPR.G21237 Trifolium pratense HOM05D005824 ORTHO05D007029 2.4e-261 905.6 721 67.4
TPR.G12910 Trifolium pratense HOM05D005824 ORTHO05D007029 9.5e-258 893.6 707 66.8
Psat6g118640 Pisum sativum HOM05D005824 ORTHO05D007029 1.2e-257 893.3 721 66.7
arahy.Tifrunner.gnm1.ann1.E5V6X9 Arachis hypogaea HOM05D005824 ORTHO05D007029 2.4e-253 879.0 713 64.9
arahy.Tifrunner.gnm1.ann1.S86EGP Arachis hypogaea HOM05D005824 ORTHO05D007029 2.7e-252 875.5 713 64.9
QL07p026733 Quercus lobata HOM05D005824 ORTHO05D007029 9.3e-197 691.0 706 53.1
GSVIVG01031305001 Vitis vinifera HOM05D005824 ORTHO05D007029 7.4e-194 681.4 710 53.0
CiPaw.10G020000 Carya illinoinensis HOM05D005824 ORTHO05D007029 2.1e-193 679.9 711 52.9
Potri.015G010900 Populus trichocarpa HOM05D005824 ORTHO05D007029 1.6e-188 663.7 728 52.1
Sabra15G0009000 Salix brachista HOM05D005824 ORTHO05D007029 2.4e-184 649.8 747 49.4
CSS0029355 Camellia sinensis var. sinensis HOM05D005824 ORTHO05D007029 5.3e-184 648.7 708 51.3
Sopen01g044470 Solanum pennellii HOM05D005824 ORTHO05D007029 3.6e-180 636.0 711 51.6
Cfa020078 Carpinus fangiana HOM05D005824 ORTHO05D007029 1.0e-179 634.4 708 51.4
Dinv24497 Davidia involucrata HOM05D005824 ORTHO05D007029 8.8e-179 631.3 705 50.5
Manes.06G027100 Manihot esculenta HOM05D005824 ORTHO05D007029 6.9e-176 621.7 710 51.3
Thecc.09G352900 Theobroma cacao HOM05D005824 ORTHO05D007029 9.1e-176 621.3 721 49.9
PGSC0003DMG400018251 Solanum tuberosum HOM05D005824 ORTHO05D007029 2.2e-174 616.7 712 50.4
Haze_20113 Corylus avellana HOM05D005824 ORTHO05D007029 3.8e-174 615.9 771 49.7
Nitab4.5_0009690g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 1.6e-172 610.5 716 48.9
Cpa.g.sc48.209 Carica papaya HOM05D005824 ORTHO05D007029 6.1e-172 608.6 718 48.1
Eucgr.B01798 Eucalyptus grandis HOM05D005824 ORTHO05D007029 2.6e-170 603.2 714 47.5
Rhsim11G0099700 Rhododendron simsii HOM05D005824 ORTHO05D007029 3.3e-170 602.8 708 48.3
Cc02_g35570 Coffea canephora HOM05D005824 ORTHO05D007029 9.7e-170 601.3 765 45.4
Gorai.005G200700 Gossypium raimondii HOM05D005824 ORTHO05D007029 2.8e-169 599.7 735 48.6
CAN.G1374.10 Capsicum annuum HOM05D005824 ORTHO05D007029 4.8e-169 599.0 709 48.5
Oeu061927.1 Olea europaea HOM05D005824 ORTHO05D007029 7.0e-168 595.1 754 46.4
TAR362G0448 Trochodendron aralioides HOM05D005824 ORTHO05D007029 7.0e-168 595.1 708 49.2
Gohir.A03G155800 Gossypium hirsutum HOM05D005824 ORTHO05D007029 9.1e-168 594.7 723 48.8
SalBow7G3942 Salvia bowleyana HOM05D005824 ORTHO05D007029 7.2e-165 585.1 713 46.8
Sc09g0002470 Simmondsia chinensis HOM05D005824 ORTHO05D007029 1.2e-164 584.3 719 47.0
TWI38G0226 Tripterygium wilfordii HOM05D005824 ORTHO05D007029 1.2e-164 584.3 712 49.4
MSTRG.15631 Avicennia marina HOM05D005824 ORTHO05D007029 1.4e-163 580.9 713 47.4
Hund21844 Selenicereus undatus HOM05D005824 ORTHO05D007029 6.7e-163 578.6 794 45.7
MBI19_g32704_MAGBIO Magnolia biondii HOM05D005824 ORTHO05D007029 4.4e-162 575.9 740 46.5
Lj5A322T66 Lonicera japonica HOM05D005824 ORTHO05D007029 8.2e-161 571.6 681 48.0
Migut.B00860 Erythranthe guttata HOM05D005824 ORTHO05D007029 4.1e-160 569.3 709 46.8
AUR62006798 Chenopodium quinoa HOM05D005824 ORTHO05D007029 7.0e-160 568.5 761 44.4
vmacro01596 Vaccinium macrocarpon HOM05D005824 ORTHO05D007029 2.0e-159 567.0 698 46.4
AUR62000450 Chenopodium quinoa HOM05D005824 ORTHO05D007029 3.5e-159 566.2 767 44.3
PSO384G0570 Papaver somniferum HOM05D005824 ORTHO05D007029 1.1e-157 561.2 717 47.7
CANSAT54G1845 Cannabis sativa HOM05D005824 ORTHO05D007029 1.5e-157 560.8 720 46.8
Gohir.D02G178900 Gossypium hirsutum HOM05D005824 ORTHO05D007029 1.5e-157 560.8 735 46.8
Prupe.6G306900 Prunus persica HOM05D005824 ORTHO05D007029 3.2e-157 559.7 764 44.6
Atru.chr12.1601 Acer truncatum HOM05D005824 ORTHO05D007029 5.5e-157 558.9 742 45.6
PSO339G3868 Papaver somniferum HOM05D005824 ORTHO05D007029 7.2e-157 558.5 713 47.3
Nn2g14227 Nelumbo nucifera HOM05D005824 ORTHO05D007029 2.7e-156 556.6 709 46.7
EL10Ac4g09532 Beta vulgaris HOM05D005824 ORTHO05D007029 8.0e-156 555.1 729 45.4
Aqoxy2G02580 Aquilegia oxysepala HOM05D005824 ORTHO05D007029 4.0e-155 552.7 712 45.5
ClCG07G011770 Citrullus lanatus HOM05D005824 ORTHO05D007029 6.7e-155 552.0 715 46.9
THA.LOC104821746 Tarenaya hassleriana HOM05D005824 ORTHO05D007029 2.0e-154 550.4 754 46.0
CsaV3_4G002430 Cucumis sativus L. HOM05D005824 ORTHO05D007029 7.5e-154 548.5 716 46.6
SGA_v2.0_scaffold33G13450 Striga asiatica HOM05D005824 ORTHO05D007029 2.2e-153 547.0 709 45.6
MELO3C017799.2 Cucumis melo HOM05D005824 ORTHO05D007029 4.8e-153 545.8 715 46.7
PSO017G5895 Papaver somniferum HOM05D005824 ORTHO05D007029 1.0e-150 538.1 711 45.9
Nitab4.5_0000185g0360 Nicotiana tabacum HOM05D005824 ORTHO05D007029 2.5e-149 533.5 711 45.1
RcHm_v2.0_Chr3g0458051 Rosa chinensis HOM05D005824 ORTHO05D007029 4.0e-147 526.2 772 44.6
MD12G1202100 Malus domestica HOM05D005824 ORTHO05D007029 5.7e-146 522.3 762 43.3
Duzib150G0567 Durio zibethinus HOM05D005824 ORTHO05D007029 1.7e-145 520.8 699 45.8
Sed0007659 Sechium edule HOM05D005824 ORTHO05D007029 1.4e-144 517.7 726 45.6
COL.COLO4_11087 Corchorus olitorius HOM05D005824 ORTHO05D007029 5.4e-144 515.8 712 43.0
PSO063G2449 Papaver somniferum HOM05D005824 ORTHO05D007029 1.6e-143 514.2 713 44.7
MD04G1189300 Malus domestica HOM05D005824 ORTHO05D007029 1.7e-142 510.8 756 43.0
Sp2g21220 Schrenkiella parvula HOM05D005824 ORTHO05D007029 5.5e-141 505.8 736 43.1
Thhalv10003721m.g Eutrema salsugineum HOM05D005824 ORTHO05D007029 2.8e-140 503.4 732 42.5
FvH4_6g08180 Fragaria vesca HOM05D005824 ORTHO05D007029 2.8e-140 503.4 773 41.8
Hma1.2p1_1243F.1_g269980 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 3.6e-140 503.1 622 47.3
FAN14G3202 Fragaria x ananassa HOM05D005824 ORTHO05D007029 6.1e-140 502.3 773 41.7
Carub.0006s2449 Capsella rubella HOM05D005824 ORTHO05D007029 8.0e-140 501.9 733 43.8
Aa31LG11G9880 Aethionema arabicum HOM05D005824 ORTHO05D007029 8.9e-139 498.4 724 43.1
Duzib168G0004 Durio zibethinus HOM05D005824 ORTHO05D007029 3.4e-138 496.5 710 42.7
ECA247G2466 Erigeron canadensis HOM05D005824 ORTHO05D007029 9.8e-138 495.0 709 44.1
Ah.10g027060 Amaranthus hybridus HOM05D005824 ORTHO05D007029 7.0e-136 488.8 765 40.4
FAN09G3961 Fragaria x ananassa HOM05D005824 ORTHO05D007029 8.6e-134 481.9 771 40.7
CARHR186810 Cardamine hirsuta HOM05D005824 ORTHO05D007029 1.6e-132 477.6 735 42.3
AL6G38630 Arabidopsis lyrata HOM05D005824 ORTHO05D007029 3.6e-132 476.5 859 38.3
Peaxi162Scf00357g00429 Petunia axillaris HOM05D005824 ORTHO05D007029 6.1e-132 475.7 655 45.0
AT5G26760 Arabidopsis thaliana HOM05D005824 ORTHO05D007029 1.0e-131 474.9 759 41.0
unitig_748.g6998 Utricularia gibba HOM05D005824 ORTHO05D000260 5.2e-131 472.6 700 41.3
CDE01G0540 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 2.0e-127 460.7 721 39.3
DCAR_005271 Daucus carota HOM05D005824 ORTHO05D007029 1.0e-126 458.4 726 42.4
C02p58640 Brassica napus HOM05D005824 ORTHO05D007029 4.9e-121 439.5 826 38.7
ATR0693G066 Amborella trichopoda HOM05D005824 ORTHO05D007029 8.6e-118 428.7 704 39.1
BolC2t11924H Brassica oleracea HOM05D005824 ORTHO05D007029 8.6e-118 428.7 830 38.4
A02p39030 Brassica napus HOM05D005824 ORTHO05D007029 7.5e-114 415.6 859 36.8
BraA02t08872Z Brassica rapa HOM05D005824 ORTHO05D007029 2.9e-113 413.7 855 36.7
Nitab4.5_0002783g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 6.4e-113 412.5 709 38.5
FAN05G5613 Fragaria x ananassa HOM05D005824 ORTHO05D007029 2.7e-111 407.1 704 44.2
Lsat_1_v5_gn_9_78801 Lactuca sativa HOM05D005824 ORTHO05D007029 7.8e-111 405.6 672 40.3
FAN02G4519 Fragaria x ananassa HOM05D005824 ORTHO05D007029 1.5e-109 401.4 751 37.9
HanXRQChr12g0362901 Helianthus annuus HOM05D005824 ORTHO05D007029 1.5e-109 401.4 710 39.2
PGR083G1123 Punica granatum HOM05D005824 ORTHO05D007029 1.4e-104 384.8 555 44.3
Ciclev10011677m.g Citrus clementina HOM05D005824 ORTHO05D007029 3.2e-104 383.6 513 45.6
BcaNung06222 Brassica carinata HOM05D005824 ORTHO05D007029 2.3e-102 377.5 825 36.6
Os05g0134300 Oryza sativa ssp. japonica HOM05D005824 ORTHO05D007029 4.2e-96 356.7 754 34.5
C07p41490 Brassica napus HOM05D005824 ORTHO05D007029 1.6e-79 301.6 727 32.7
BolC7t44682H Brassica oleracea HOM05D005824 ORTHO05D007029 2.1e-79 301.2 723 32.2
BcaNung03676 Brassica carinata HOM05D005824 ORTHO05D007029 7.9e-79 299.3 725 32.7
Actinidia35501 Actinidia chinensis HOM05D005824 ORTHO05D007029 4.3e-77 293.5 696 31.5
Solyc01g101010.4 Solanum lycopersicum HOM05D005824 ORTHO05D007029 2.1e-76 291.2 375 47.7
Zm00001eb354720 Zea mays HOM05D005824 ORTHO05D007029 1.8e-67 261.5 632 33.1
Gohir.A08G201701 Gossypium hirsutum HOM05D005824 ORTHO05D007029 1.0e-65 255.8 712 31.0
Mapoly0075s0015 Marchantia polymorpha HOM05D005824 ORTHO05D007029 3.3e-61 240.7 730 27.3
Nitab4.5_0000185g0370 Nicotiana tabacum HOM05D005824 ORTHO05D007029 3.4e-58 230.7 274 45.6
HPP92_021934 Vanilla planifolia HOM05D005824 ORTHO05D007029 1.0e-57 229.2 345 39.7
Hma1.2p1_1553F.1_g290340 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 3.0e-54 217.6 690 30.7
SGA_v2.0_scaffold438G51629 Striga asiatica HOM05D005824 ORTHO05D007029 4.4e-53 213.8 196 52.6
Pp3c6_10400 Physcomitrium patens HOM05D005824 ORTHO05D007029 5.7e-53 213.4 892 26.1
SMO203G0090 Selaginella moellendorffii HOM05D005824 ORTHO05D007029 1.3e-49 202.2 727 26.5
SEGI_20129 Sequoiadendron giganteum HOM05D005824 ORTHO05D007029 5.2e-46 190.3 317 38.5
VMungo0251G1262 Vigna mungo HOM05D005824 ORTHO05D007029 7.0e-43 179.9 176 64.2
AagrBONN_evm.TU.Sc2ySwM_117.2728 Anthoceros agrestis HOM05D005824 ORTHO05D007029 1.6e-42 178.7 721 25.4
A06p36990 Brassica napus HOM05D005824 ORTHO05D007029 1.7e-41 175.3 176 50.0
BraA06t26625Z Brassica rapa HOM05D005824 ORTHO05D007029 1.7e-41 175.3 176 50.0
Oeu060660.1 Olea europaea HOM05D005824 ORTHO05D007029 1.6e-39 168.7 128 64.1
HPP92_021933 Vanilla planifolia HOM05D005824 ORTHO05D007029 7.7e-34 149.8 273 36.6
CBR_g20185 Chara braunii HOM05D005824 ORTHO05D007029 6.1e-31 140.2 231 31.2
Dinv30929 Davidia involucrata HOM05D005824 ORTHO05D007029 8.0e-31 139.8 131 58.0
Cfa020079 Carpinus fangiana HOM05D005824 ORTHO05D007029 2.7e-26 124.8 82 70.7
Nitab4.5_0000185g0350 Nicotiana tabacum HOM05D005824 ORTHO05D007029 6.8e-22 110.2 103 57.3
CDE12G0845 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 9.2e-19 99.8 93 52.7
Zm00001eb056090 Zea mays HOM05D000739 ORTHO05D007029 3.3e-16 91.3 123 41.5
CANSAT54G0922 Cannabis sativa HOM05D005824 ORTHO05D007029 1.2e-15 89.4 259 30.1
Zm00001eb289330 Zea mays HOM05D005824 ORTHO05D007029 1.0e-14 86.3 113 42.5
AUR62009842 Chenopodium quinoa HOM05D003327 ORTHO05D004535 1.2e-10 72.8 158 34.2
QL03p009284 Quercus lobata HOM05D005824 ORTHO05D007029 1.0e-09 69.7 54 63.0


User provided reference genes

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