Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G218200 Phaseolus vulgaris HOM05D004134 ORTHO05D005240 0.0e+00 1462.6 733 100.0
VMungo0540G2254 Vigna mungo HOM05D004134 ORTHO05D005240 0.0e+00 1342.0 737 90.8
Glyma.16G003700 Glycine max HOM05D004134 ORTHO05D005240 0.0e+00 1301.2 699 90.7
Glyma.12G167800 Glycine max HOM05D004134 ORTHO05D005240 0.0e+00 1286.6 734 86.2
TPR.G2118 Trifolium pratense HOM05D004134 ORTHO05D005240 0.0e+00 1205.7 685 85.1
Psat0s1535g0080 Pisum sativum HOM05D004134 ORTHO05D005240 0.0e+00 1189.1 641 88.3
Ca_00047_v3 Cicer arietinum L. HOM05D004134 ORTHO05D005240 0.0e+00 1175.2 737 80.5
arahy.Tifrunner.gnm1.ann1.FJZE1E Arachis hypogaea HOM05D004134 ORTHO05D005240 0.0e+00 1151.7 712 80.1
Lj6g0001374 Lotus japonicus HOM05D004134 ORTHO05D005240 0.0e+00 1151.0 731 78.9
arahy.Tifrunner.gnm1.ann1.PV76CP Arachis hypogaea HOM05D004134 ORTHO05D005240 0.0e+00 1149.0 712 79.9
Medtr2g006020 Medicago truncatula HOM05D004134 ORTHO05D005240 0.0e+00 1145.6 687 80.2
Potri.003G009600 Populus trichocarpa HOM05D004134 ORTHO05D005240 0.0e+00 1077.4 634 79.7
CiPaw.05G006000 Carya illinoinensis HOM05D004134 ORTHO05D005240 5.0e-312 1074.7 748 71.3
Dinv19398 Davidia involucrata HOM05D004134 ORTHO05D005240 5.0e-312 1074.3 734 71.5
Thecc.01G149600 Theobroma cacao HOM05D004134 ORTHO05D005240 3.8e-310 1067.8 634 79.0
Manes.02G223500 Manihot esculenta HOM05D004134 ORTHO05D005240 5.5e-309 1063.9 617 80.2
Duzib147G1693 Durio zibethinus HOM05D004134 ORTHO05D005240 1.6e-308 1062.4 634 78.5
Gohir.D12G002200 Gossypium hirsutum HOM05D004134 ORTHO05D005240 6.1e-308 1060.4 634 78.4
Gorai.008G001600 Gossypium raimondii HOM05D004134 ORTHO05D005240 1.8e-307 1058.9 634 78.2
CSS0009525 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 3.9e-307 1057.7 711 73.7
Gohir.A12G002500 Gossypium hirsutum HOM05D004134 ORTHO05D005240 2.5e-306 1055.0 634 77.8
Duzib264G0885 Durio zibethinus HOM05D004134 ORTHO05D005240 5.7e-306 1053.9 634 77.9
CSS0031590 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 2.2e-305 1052.0 707 74.0
Actinidia26163 Actinidia chinensis HOM05D004134 ORTHO05D005240 4.8e-305 1050.8 619 78.8
COL.COLO4_33567 Corchorus olitorius HOM05D004134 ORTHO05D005240 2.6e-303 1045.0 628 78.0
Haze_10069 Corylus avellana HOM05D004134 ORTHO05D005240 2.6e-303 1045.0 712 72.8
Nn1g06242 Nelumbo nucifera HOM05D004134 ORTHO05D005240 1.0e-302 1043.1 645 75.3
Haze_10066 Corylus avellana HOM05D004134 ORTHO05D005240 1.3e-302 1042.7 724 70.9
Ciclev10000416m.g Citrus clementina HOM05D004134 ORTHO05D005240 6.5e-302 1040.4 619 77.9
RhsimUnG0241700 Rhododendron simsii HOM05D004134 ORTHO05D005240 1.6e-300 1035.8 637 76.9
THA.LOC104801417 Tarenaya hassleriana HOM05D004134 ORTHO05D005240 7.9e-300 1033.5 647 75.3
TWI23G0224 Tripterygium wilfordii HOM05D004134 ORTHO05D005240 7.9e-300 1033.5 637 75.2
Sed0024495 Sechium edule HOM05D004134 ORTHO05D005240 1.8e-299 1032.3 659 73.9
PGSC0003DMG400024925 Solanum tuberosum HOM05D004134 ORTHO05D005240 2.0e-298 1028.9 712 69.8
Rhsim10G0097200 Rhododendron simsii HOM05D004134 ORTHO05D005240 4.3e-298 1027.7 712 70.9
Eucgr.G00349 Eucalyptus grandis HOM05D004134 ORTHO05D005240 1.3e-297 1026.2 619 77.2
PGR042G0619 Punica granatum HOM05D004134 ORTHO05D005240 1.3e-297 1026.2 714 70.2
Atru.chr6.762 Acer truncatum HOM05D004134 ORTHO05D005240 4.1e-296 1021.1 706 72.8
TAR381G1335 Trochodendron aralioides HOM05D004134 ORTHO05D005240 5.3e-296 1020.8 623 76.1
QL02p100166 Quercus lobata HOM05D004134 ORTHO05D005240 6.9e-296 1020.4 734 68.5
Cfa014311 Carpinus fangiana HOM05D004134 ORTHO05D001258 1.2e-295 1019.6 615 77.1
Sc12g0003380 Simmondsia chinensis HOM05D004134 ORTHO05D005240 6.5e-294 1013.8 636 74.8
MELO3C022134.2 Cucumis melo HOM05D004134 ORTHO05D005240 8.5e-294 1013.4 699 69.8
CANSAT54G0881 Cannabis sativa HOM05D004134 ORTHO05D005240 4.2e-293 1011.1 730 68.2
MSTRG.5116 Avicennia marina HOM05D004134 ORTHO05D005240 1.2e-292 1009.6 722 67.7
Prupe.7G053600 Prunus persica HOM05D004134 ORTHO05D005240 3.9e-291 1004.6 711 70.7
CsaV3_5G039580 Cucumis sativus L. HOM05D004134 ORTHO05D005240 5.1e-291 1004.2 709 69.1
Lju50A15T20 Lonicera japonica HOM05D004134 ORTHO05D005240 1.1e-290 1003.0 710 68.6
Lj8C281T2 Lonicera japonica HOM05D004134 ORTHO05D005240 8.2e-289 996.9 616 75.0
Aa31LG3G10940 Aethionema arabicum HOM05D004134 ORTHO05D005240 7.0e-288 993.8 639 72.3
GSVIVG01004116001 Vitis vinifera HOM05D004134 ORTHO05D005240 5.9e-287 990.7 635 75.1
BcaC02g12241 Brassica carinata HOM05D004134 ORTHO05D005240 2.0e-282 975.7 717 68.6
C04p06100 Brassica napus HOM05D004134 ORTHO05D005240 2.0e-282 975.7 717 68.6
BolC4t22236H Brassica oleracea HOM05D004134 ORTHO05D005240 2.0e-282 975.7 717 68.6
BcaB02g08952 Brassica carinata HOM05D004134 ORTHO05D005240 5.7e-282 974.2 622 73.3
Sp4g27170 Schrenkiella parvula HOM05D004134 ORTHO05D005240 9.7e-282 973.4 626 73.5
A05p05210 Brassica napus HOM05D004134 ORTHO05D005240 2.2e-281 972.2 619 73.0
BraA05t19492Z Brassica rapa HOM05D004134 ORTHO05D005240 1.8e-280 969.1 618 72.8
HanXRQChr07g0187421 Helianthus annuus HOM05D004134 ORTHO05D005240 3.1e-280 968.4 715 68.0
MD10G1070100 Malus domestica HOM05D004134 ORTHO05D005240 1.6e-279 966.1 638 73.7
C03p29850 Brassica napus HOM05D004134 ORTHO05D005240 2.0e-279 965.7 625 72.8
AL4G38180 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 2.7e-279 965.3 624 72.8
SGA_v2.0_scaffold272G46372 Striga asiatica HOM05D004134 ORTHO05D005240 3.5e-279 964.9 714 66.0
BolC3t15332H Brassica oleracea HOM05D004134 ORTHO05D005240 2.2e-278 962.2 625 72.5
BcaC01g05160 Brassica carinata HOM05D004134 ORTHO05D005240 2.9e-278 961.8 633 71.7
BraA03t11704Z Brassica rapa HOM05D004134 ORTHO05D005240 6.5e-278 960.7 734 65.3
Carub.0004s2260 Capsella rubella HOM05D004134 ORTHO05D005240 2.5e-277 958.7 737 65.3
FAN18G3216 Fragaria x ananassa HOM05D004134 ORTHO05D005240 4.2e-277 958.0 716 66.5
Lj8C283T12 Lonicera japonica HOM05D004134 ORTHO05D005240 1.6e-276 956.1 616 72.2
FvH4_5g21650 Fragaria vesca HOM05D004134 ORTHO05D005240 2.1e-276 955.7 709 66.3
CAN.G798.51 Capsicum annuum HOM05D004134 ORTHO05D005240 3.6e-276 954.9 624 72.0
A03p25010 Brassica napus HOM05D004134 ORTHO05D005240 8.0e-276 953.7 734 65.1
MD05G1062400 Malus domestica HOM05D004134 ORTHO05D005240 4.0e-275 951.4 623 73.7
vmacro19872 Vaccinium macrocarpon HOM05D004134 ORTHO05D005240 4.0e-275 951.4 625 73.4
Migut.B00788 Erythranthe guttata HOM05D004134 ORTHO05D005240 4.4e-274 948.0 745 62.8
BcaB01g03295 Brassica carinata HOM05D004134 ORTHO05D005240 4.8e-273 944.5 754 63.0
Lsat_1_v5_gn_7_76380 Lactuca sativa HOM05D004134 ORTHO05D005240 7.0e-272 940.6 624 71.3
AT2G40360 Arabidopsis thaliana HOM05D004134 ORTHO05D005240 5.9e-271 937.6 743 64.9
CARHR135440 Cardamine hirsuta HOM05D004134 ORTHO05D005240 5.9e-271 937.6 708 65.3
PSO384G1237 Papaver somniferum HOM05D004134 ORTHO05D005240 1.0e-270 936.8 619 71.2
Hund16551 Selenicereus undatus HOM05D004134 ORTHO05D005240 1.3e-270 936.4 673 67.8
PSO339G3543 Papaver somniferum HOM05D004134 ORTHO05D005240 2.9e-270 935.3 619 71.1
Zm00001eb131370 Zea mays HOM05D004134 ORTHO05D005240 8.5e-270 933.7 648 66.7
SGA_v2.0_scaffold304G47905 Striga asiatica HOM05D004134 ORTHO05D005240 3.2e-269 931.8 669 66.5
PSO063G3695 Papaver somniferum HOM05D004134 ORTHO05D005240 1.8e-267 926.0 648 68.4
Solyc01g103720.4 Solanum lycopersicum HOM05D004134 ORTHO05D005240 4.4e-266 921.4 564 74.8
Thhalv10001320m.g Eutrema salsugineum HOM05D004134 ORTHO05D005240 7.0e-264 914.1 712 64.7
Potri.004G222500 Populus trichocarpa HOM05D004134 ORTHO05D005240 7.0e-264 914.1 539 77.7
Aqoxy6G03049 Aquilegia oxysepala HOM05D004134 ORTHO05D005240 4.5e-263 911.4 625 70.2
MBI13_g20493_MAGBIO Magnolia biondii HOM05D004134 ORTHO05D005240 5.9e-263 911.0 571 75.3
DCAR_001836 Daucus carota HOM05D004134 ORTHO05D005240 2.3e-259 899.0 779 58.9
EL10Ac6g14818 Beta vulgaris HOM05D004134 ORTHO05D005240 1.1e-256 890.2 641 67.4
Sabra01G0168600 Salix brachista HOM05D004134 ORTHO05D005240 2.7e-255 885.6 707 62.8
Oeu034147.1 Olea europaea HOM05D004134 ORTHO05D005240 7.8e-255 884.0 707 64.2
FAN13G2390 Fragaria x ananassa HOM05D004134 ORTHO05D005240 1.0e-254 883.6 767 60.0
Dinv07474 Davidia involucrata HOM05D004134 ORTHO05D005240 3.0e-254 882.1 593 73.2
Hma1.2p1_0427F.1_g150710 Hydrangea macrophylla HOM05D004134 ORTHO05D005240 1.6e-252 876.3 622 68.0
FAN04G2346 Fragaria x ananassa HOM05D004134 ORTHO05D005240 2.3e-251 872.5 736 61.0
Sabra03G0005000 Salix brachista HOM05D004134 ORTHO05D005240 3.1e-251 872.1 605 70.9
unitig_899.g15494 Utricularia gibba HOM05D004134 ORTHO05D005240 8.9e-243 844.0 636 65.6
SalBow1G3184 Salvia bowleyana HOM05D004134 ORTHO05D005240 1.3e-241 840.1 646 63.0
RcHm_v2.0_Chr7g0241541 Rosa chinensis HOM05D004134 ORTHO05D005240 1.6e-239 833.2 646 64.1
AL3G45050 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 3.9e-238 828.6 620 64.5
Lalb_Chr21g0308281 Lupinus albus HOM05D004134 ORTHO05D005240 2.3e-235 819.3 550 77.5
RcHm_v2.0_Chr7g0209131 Rosa chinensis HOM05D004134 ORTHO05D005240 6.8e-235 817.8 645 62.9
Mapoly0025s0073 Marchantia polymorpha HOM05D004134 ORTHO05D005240 2.4e-232 809.3 647 59.2
SalBow8G0286 Salvia bowleyana HOM05D004134 ORTHO05D005240 1.2e-231 807.0 703 58.6
Pp3c18_14790 Physcomitrium patens HOM05D004134 ORTHO05D005240 3.5e-231 805.4 645 59.5
SMO361G0066 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 3.5e-231 805.4 662 58.6
Prupe.6G114000 Prunus persica HOM05D004134 ORTHO05D005240 5.2e-227 791.6 682 60.4
CARHR115520 Cardamine hirsuta HOM05D004134 ORTHO05D005240 1.7e-222 776.5 553 66.7
Nitab4.5_0002596g0050 Nicotiana tabacum HOM05D004134 ORTHO05D005240 6.2e-220 768.1 731 56.0
SMO004G0015 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 1.4e-219 766.9 621 58.9
Haze_12759 Corylus avellana HOM05D004134 ORTHO05D005240 1.8e-219 766.5 583 65.5
CBR_g19000 Chara braunii HOM05D004134 ORTHO05D005240 7.9e-215 751.1 648 56.3
ClCG08G001520 Citrullus lanatus HOM05D004134 ORTHO05D005240 4.2e-200 702.2 442 74.4
AagrBONN_evm.TU.Sc2ySwM_344.2863 Anthoceros agrestis HOM05D004134 ORTHO05D005240 4.3e-197 692.2 539 61.2
Nitab4.5_0000948g0120 Nicotiana tabacum HOM05D004134 ORTHO05D005240 9.0e-195 684.5 712 52.1
SalBow8G3818 Salvia bowleyana HOM05D004134 ORTHO05D005240 1.3e-193 680.6 545 61.1
Sopen01g046140 Solanum pennellii HOM05D004134 ORTHO05D005240 6.5e-193 678.3 529 65.4
SalBow8G2435 Salvia bowleyana HOM05D004134 ORTHO05D005240 8.5e-193 677.9 646 54.5
Cpa.g.sc612.1 Carica papaya HOM05D004134 ORTHO05D005240 1.1e-192 677.6 645 55.0
RcHm_v2.0_Chr7g0241521 Rosa chinensis HOM05D004134 ORTHO05D005240 3.8e-185 652.5 517 63.6
Ah.09g229700 Amaranthus hybridus HOM05D004134 ORTHO05D005240 4.2e-176 622.5 450 66.2
AUR62027202 Chenopodium quinoa HOM05D004134 ORTHO05D005240 5.5e-176 622.1 446 66.8
Peaxi162Scf00011g00938 Petunia axillaris HOM05D004134 ORTHO05D005240 5.5e-176 622.1 423 70.7
Cc07_g19170 Coffea canephora HOM05D004134 ORTHO05D005240 3.7e-172 609.4 432 65.5
Cre10.g417950 Chlamydomonas reinhardtii HOM05D004134 ORTHO05D005240 2.2e-169 600.1 672 47.3
ATR0681G288 Amborella trichopoda HOM05D004134 ORTHO05D005240 1.0e-166 591.3 423 64.8
ATR0598G150 Amborella trichopoda HOM05D004134 ORTHO05D005240 1.7e-164 583.9 423 63.8
PRCOL_00006650 Prasinoderma coloniale HOM05D004134 ORTHO05D005240 1.0e-161 574.7 727 42.4
Haze_26888 Corylus avellana HOM05D004134 ORTHO05D005240 3.3e-144 516.5 644 40.7
Cfa026475 Carpinus fangiana HOM05D004134 ORTHO05D005240 1.6e-143 514.2 658 42.9
AUR62003266 Chenopodium quinoa HOM05D004134 ORTHO05D005240 2.4e-139 500.4 446 56.3
HPP92_014183 Vanilla planifolia HOM05D004134 ORTHO05D005240 1.7e-137 494.2 456 55.9
MCO01G460 Micromonas commoda HOM05D004134 ORTHO05D005240 6.4e-132 475.7 626 40.1
AL6G11500 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 2.8e-127 460.3 320 67.8
Ah.09g232800 Amaranthus hybridus HOM05D004134 ORTHO05D005240 1.4e-110 404.8 434 49.8
Lalb_Chr21g0308271 Lupinus albus HOM05D004134 ORTHO05D005240 2.1e-106 391.0 192 95.3
Cpa.g.sc5814.1 Carica papaya HOM05D004134 ORTHO05D005240 5.6e-96 356.3 226 73.5
Cc07_g19180 Coffea canephora HOM05D004134 ORTHO05D005240 1.4e-91 341.7 189 80.4
Sopen01g046130 Solanum pennellii HOM05D004134 ORTHO05D005240 1.3e-89 335.1 183 82.0
TAR376G0266 Trochodendron aralioides HOM05D004134 ORTHO05D005240 3.4e-85 320.5 169 83.4
Carub.0008s0866 Capsella rubella HOM05D004134 ORTHO05D005240 2.5e-83 314.3 197 75.1
ATR0598G203 Amborella trichopoda HOM05D004134 ORTHO05D005240 3.4e-77 293.9 185 71.9
ATR0681G369 Amborella trichopoda HOM05D004134 ORTHO05D005240 1.7e-76 291.6 185 70.8
RcHm_v2.0_Chr7g0241531 Rosa chinensis HOM05D004134 ORTHO05D005240 1.6e-74 285.0 185 71.4
HPP92_014184 Vanilla planifolia HOM05D004134 ORTHO05D005240 2.3e-73 281.2 156 80.1
Ah.09g229690 Amaranthus hybridus HOM05D004134 ORTHO05D005240 3.6e-66 257.3 166 74.1
ClCG09G010900 Citrullus lanatus HOM05D004134 ORTHO05D005240 1.4e-65 255.4 136 82.4
A05p05190 Brassica napus HOM05D004134 ORTHO05D005240 3.0e-57 227.6 151 70.2
SalBow8G0646 Salvia bowleyana HOM05D004134 ORTHO05D005240 5.5e-51 206.8 103 86.4
ECA236G2574 Erigeron canadensis HOM05D004134 ORTHO05D005240 3.0e-49 201.1 254 47.6
BcaC02g12245 Brassica carinata HOM05D004134 ORTHO05D005240 7.2e-43 179.9 113 77.0
Peaxi162Scf00011g00939 Petunia axillaris HOM05D004134 ORTHO05D005240 4.7e-42 177.2 84 90.5
Lsat_1_v5_gn_5_138060 Lactuca sativa HOM05D004134 ORTHO05D005240 2.8e-39 167.9 110 70.0
Psat2g083520 Pisum sativum HOM05D004134 ORTHO05D023219 2.8e-34 151.4 147 55.8
TAR087G0001 Trochodendron aralioides HOM05D004134 ORTHO05D005240 6.1e-34 150.2 108 69.4
C04p06060 Brassica napus HOM05D004134 ORTHO05D005240 1.2e-32 146.0 79 84.8
BcaC01g05161 Brassica carinata HOM05D004134 ORTHO05D005240 1.8e-30 138.7 115 55.7
Migut.I00323 Erythranthe guttata HOM05D004134 ORTHO05D005240 5.6e-27 127.1 75 74.7
TPR.G18539 Trifolium pratense HOM05D001024 ORTHO05D000878 2.8e-26 124.8 85 72.9
Lsat_1_v5_gn_2_109841 Lactuca sativa HOM05D004134 ORTHO05D005240 4.7e-26 124.0 72 77.8
SGA_v2.0_scaffold318G48508 Striga asiatica HOM05D001260 ORTHO05D002424 2.3e-25 121.7 72 72.2
Ah.03g141930 Amaranthus hybridus HOM05D004134 ORTHO05D005240 3.2e-14 84.7 50 74.0
SGA_v2.0_scaffold94G28534 Striga asiatica HOM05D004134 ORTHO05D023219 1.5e-11 75.9 50 70.0
Atru.chr11.847 Acer truncatum HOM05D004134 ORTHO05D023219 2.8e-10 71.6 44 72.7
SGA_v2.0_scaffold2705G54186 Striga asiatica HOM05D004134 ORTHO05D023219 5.2e-09 67.4 43 72.1
Os03g0115400 Oryza sativa ssp. japonica HOM05D000645 ORTHO05D000494 1.9e-06 58.9 243 22.2
Rhsim11G0125000 Rhododendron simsii HOM05D004134 ORTHO05D339485 3.2e-06 58.2 62 51.6
AUR62000532 Chenopodium quinoa HOM05D004842 ORTHO05D005929 4.1e-06 57.8 281 23.5
Sed0015562 Sechium edule HOM05D000645 ORTHO05D000494 4.1e-06 57.8 75 32.0
Mapoly0099s0024 Marchantia polymorpha HOM05D005091 ORTHO05D006047 5.4e-06 57.4 140 27.1
MCO14G383 Micromonas commoda HOM05D004736 ORTHO05D006424 5.4e-06 57.4 56 41.1
Thhalv10022667m.g Eutrema salsugineum HOM05D005091 ORTHO05D006047 7.1e-06 57.0 259 26.3
Hund25080 Selenicereus undatus HOM05D001335 ORTHO05D001184 7.1e-06 57.0 53 45.3
Sed0016673 Sechium edule HOM05D000645 ORTHO05D000494 9.2e-06 56.6 75 30.7


User provided reference genes

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