Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1367.4 708 100.0
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 0.0e+00 1336.6 708 97.7
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1333.9 708 97.0
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1332.0 708 96.8
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 0.0e+00 1265.4 705 92.6
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 0.0e+00 1258.8 709 92.0
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1246.5 687 93.0
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1246.5 687 93.0
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1246.5 687 93.0
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 0.0e+00 1237.6 708 90.7
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 0.0e+00 1237.6 709 90.6
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 0.0e+00 1233.0 708 89.5
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1227.2 708 88.1
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 0.0e+00 1227.2 708 89.7
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 0.0e+00 1225.3 709 90.1
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 0.0e+00 1222.6 697 89.2
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 0.0e+00 1218.8 708 88.6
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1218.8 701 88.7
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1216.4 708 87.9
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 0.0e+00 1213.7 708 87.7
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 0.0e+00 1211.8 708 87.1
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 0.0e+00 1210.3 708 87.4
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1209.9 708 87.7
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1209.1 693 89.2
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1206.4 708 87.0
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1202.2 692 88.9
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 0.0e+00 1202.2 708 87.0
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 0.0e+00 1198.7 701 87.3
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 0.0e+00 1197.6 708 86.6
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 0.0e+00 1197.2 688 89.1
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 0.0e+00 1196.4 708 86.0
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 0.0e+00 1193.7 705 87.5
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1192.9 701 87.3
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1184.9 708 86.9
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 0.0e+00 1184.1 697 86.5
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 0.0e+00 1183.7 700 85.9
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 0.0e+00 1181.0 708 85.2
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 0.0e+00 1181.0 708 85.2
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1179.9 708 85.0
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1179.5 708 85.0
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 0.0e+00 1174.5 694 86.7
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 0.0e+00 1174.5 707 85.1
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 0.0e+00 1169.8 708 85.0
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 0.0e+00 1168.3 735 83.1
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 0.0e+00 1166.4 708 83.3
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 0.0e+00 1166.4 708 83.2
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 0.0e+00 1166.4 708 83.2
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1165.6 698 86.0
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1164.8 705 84.0
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 0.0e+00 1164.4 671 88.2
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 0.0e+00 1163.7 695 84.0
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1163.7 697 84.2
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1163.7 697 84.2
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 0.0e+00 1163.7 736 81.5
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 0.0e+00 1163.3 706 83.3
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 0.0e+00 1162.1 719 83.3
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1161.4 697 84.2
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 0.0e+00 1161.0 708 84.7
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1160.6 714 84.0
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 0.0e+00 1159.8 697 84.2
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 0.0e+00 1159.4 731 82.6
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 0.0e+00 1159.1 697 83.9
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 0.0e+00 1158.7 726 82.8
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1157.9 697 83.8
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1157.5 685 85.5
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 0.0e+00 1157.1 698 84.1
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1155.6 685 85.4
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1152.5 694 84.1
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 0.0e+00 1150.6 710 84.2
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 0.0e+00 1150.6 708 82.9
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 0.0e+00 1150.6 693 84.0
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1147.1 696 83.6
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 0.0e+00 1146.0 722 81.3
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 0.0e+00 1143.6 689 85.2
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 0.0e+00 1142.1 708 81.8
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 0.0e+00 1141.3 692 85.1
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1139.4 709 82.7
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 0.0e+00 1139.0 708 82.8
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 0.0e+00 1137.5 691 83.6
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 0.0e+00 1134.4 708 81.5
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 0.0e+00 1133.2 698 82.7
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 0.0e+00 1129.8 688 83.6
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 0.0e+00 1125.2 707 81.3
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 0.0e+00 1124.4 690 82.5
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 0.0e+00 1120.5 740 78.0
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1120.5 696 82.0
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 0.0e+00 1114.8 668 84.7
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 0.0e+00 1114.8 783 75.1
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1113.6 686 83.1
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 0.0e+00 1109.0 750 77.5
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 0.0e+00 1106.7 701 79.5
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 0.0e+00 1093.6 682 81.7
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1093.2 720 79.0
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 0.0e+00 1082.4 740 76.5
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 5.3e-309 1063.9 700 76.7
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 2.0e-308 1062.0 666 82.3
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 2.2e-307 1058.5 694 77.7
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 1.9e-303 1045.4 716 75.8
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 1.2e-300 1036.2 744 72.0
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 2.3e-288 995.3 614 82.6
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 5.0e-283 977.6 591 83.4
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 5.0e-283 977.6 631 81.0
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 6.1e-281 970.7 707 68.3
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 1.1e-279 966.5 689 70.0
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 1.1e-279 966.5 689 70.0
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.2e-271 939.9 584 81.2
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 2.2e-270 935.6 683 74.1
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 3.7e-270 934.9 700 68.0
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 3.7e-270 934.9 691 68.7
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 9.1e-261 903.7 589 78.8
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 1.9e-258 896.0 566 79.2
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 9.5e-258 893.6 518 88.4
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 3.0e-256 888.6 554 81.2
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 1.5e-247 859.8 675 68.6
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 2.1e-241 839.3 489 87.3
Os10g0488300 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 5.2e-232 808.1 681 59.3
Zm00001eb045280 Zea mays HOM05D004330 ORTHO05D005182 8.9e-224 780.8 675 58.2
COL.COLO4_33595 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.9e-202 709.9 470 80.6
CDE03G0141 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 5.6e-202 708.4 423 82.5
SEGI_21093 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 4.0e-155 552.7 328 81.7
MCO11G104 Micromonas commoda HOM05D004330 ORTHO05D005182 7.0e-152 542.0 750 43.3
Cre08.g367200 Chlamydomonas reinhardtii HOM05D004330 ORTHO05D005182 2.3e-139 500.4 756 37.7
Migut.C00321 Erythranthe guttata HOM05D004330 ORTHO05D005182 2.5e-133 480.3 280 85.7
CSS0031487 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 4.1e-128 463.0 273 84.6
Haze_02247 Corylus avellana HOM05D004330 ORTHO05D005182 6.0e-127 459.1 269 87.4
CBR_g54934 Chara braunii HOM05D004330 ORTHO05D005182 1.7e-118 431.0 359 61.8
PRCOL_00005416 Prasinoderma coloniale HOM05D004330 ORTHO05D005182 5.4e-112 409.5 750 35.2
COL.COLO4_00397 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.0e-110 405.2 237 86.1
MBI16_g41537_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 1.3e-110 404.8 233 85.4
SGA_v2.0_scaffold227G43197 Striga asiatica HOM05D004330 ORTHO05D005182 2.3e-110 404.1 253 80.6
HPP92_006235 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.2e-108 398.3 261 81.2
CDE03G0281 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 9.3e-104 382.1 249 81.5
HPP92_006237 Vanilla planifolia HOM05D004330 ORTHO05D005182 6.0e-79 299.7 182 79.1
FvH4_6g22200 Fragaria vesca HOM05D004330 ORTHO05D005182 1.1e-75 288.9 192 82.3
SalBow1G7663 Salvia bowleyana HOM05D001091 ORTHO05D001020 1.3e-73 282.0 215 67.9
MBI13_g40628_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 3.0e-70 270.8 148 85.8
Rhsim02G0174800 Rhododendron simsii HOM05D004330 ORTHO05D005182 1.5e-69 268.5 195 71.8
FAN14G0768 Fragaria x ananassa HOM05D004330 ORTHO05D005182 2.2e-60 238.0 192 71.4
CBR_g54936 Chara braunii HOM05D000019 ORTHO05D000353 3.1e-59 234.2 155 67.1
Actinidia09912 Actinidia chinensis HOM05D004330 ORTHO05D005182 3.8e-57 227.3 165 72.7
Oeu028617.1 Olea europaea HOM05D004330 ORTHO05D005182 9.4e-56 222.6 156 72.4
QL04p036179 Quercus lobata HOM05D004330 ORTHO05D037441 1.0e-54 219.2 180 70.0
QL09p008022 Quercus lobata HOM05D004330 ORTHO05D005182 2.3e-54 218.0 214 60.3
Cfa027264 Carpinus fangiana HOM05D004330 ORTHO05D005182 5.9e-50 203.4 489 28.8
Hund19535 Selenicereus undatus HOM05D004330 ORTHO05D005182 7.2e-48 196.4 122 84.4
Nitab4.5_0006062g0030 Nicotiana tabacum HOM05D004330 ORTHO05D005182 6.1e-47 193.4 122 82.8
HanXRQChr10g0312231 Helianthus annuus HOM05D004330 ORTHO05D005182 6.3e-44 183.3 104 89.4
Rhsim02G0174700 Rhododendron simsii HOM05D004330 ORTHO05D005182 6.5e-41 173.3 111 84.7
SEGI_19884 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 1.5e-37 162.2 111 74.8
C06p46260 Brassica napus HOM05D004330 ORTHO05D005182 1.2e-29 136.0 100 69.0
C06p46170 Brassica napus HOM05D004330 ORTHO05D005182 2.2e-28 131.7 100 67.0
C06p46210 Brassica napus HOM05D004330 ORTHO05D005182 2.2e-28 131.7 100 67.0
CARHR152420 Cardamine hirsuta HOM05D004330 ORTHO05D005182 4.1e-27 127.5 139 53.2
Haze_14000 Corylus avellana HOM05D004330 ORTHO05D005182 5.4e-27 127.1 73 86.3
MBI13_g40627_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 4.5e-26 124.0 81 79.0
CARHR064590 Cardamine hirsuta HOM05D004330 ORTHO05D005182 1.2e-23 115.9 127 52.0
COL.COLO4_23503 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.2e-23 115.9 81 70.4
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 2.2e-20 105.1 72 70.8
EL10Ac2g03252 Beta vulgaris HOM05D004330 ORTHO05D005182 4.9e-20 104.0 69 71.0
HPP92_006236 Vanilla planifolia HOM05D004330 ORTHO05D005182 2.4e-19 101.7 57 86.0
Zm00001eb378040 Zea mays HOM05D004330 ORTHO05D000629 7.0e-19 100.1 59 81.4
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 9.2e-19 99.8 77 66.2
HPP92_006372 Vanilla planifolia HOM05D004330 ORTHO05D005182 8.6e-17 93.2 78 64.1
EL10Ac2g03375 Beta vulgaris HOM05D015602 ORTHO05D006373 9.5e-16 89.7 65 70.8
Haze_02240 Corylus avellana HOM05D000586 ORTHO05D001010 4.0e-14 84.3 61 73.8
SGA_v2.0_scaffold123G33447 Striga asiatica HOM05D004330 ORTHO05D005182 4.9e-12 77.4 78 53.8
COL.COLO4_37492 Corchorus olitorius HOM05D004330 ORTHO05D005182 8.3e-12 76.6 61 67.2
GSVIVG01018671001 Vitis vinifera HOM05D004330 ORTHO05D005182 1.2e-10 72.8 46 73.9
QL05p049490 Quercus lobata HOM05D000205 ORTHO05D037441 2.7e-10 71.6 40 92.5


User provided reference genes

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