Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G065300 Phaseolus vulgaris HOM05D006184 ORTHO05D007862 0.0e+00 1346.3 651 100.0
VMungo0540G2418 Vigna mungo HOM05D006184 ORTHO05D007862 0.0e+00 1313.1 648 97.2
Lj6g0009842 Lotus japonicus HOM05D006184 ORTHO05D007862 0.0e+00 1274.2 648 93.7
Glyma.18G065700 Glycine max HOM05D006184 ORTHO05D007862 0.0e+00 1263.1 646 93.2
Ca_14911_v3 Cicer arietinum L. HOM05D006184 ORTHO05D007862 0.0e+00 1262.3 647 92.9
Medtr3g462950 Medicago truncatula HOM05D006184 ORTHO05D007862 0.0e+00 1259.6 648 92.7
arahy.Tifrunner.gnm1.ann1.N1U5TX Arachis hypogaea HOM05D006184 ORTHO05D007862 0.0e+00 1254.6 649 92.1
arahy.Tifrunner.gnm1.ann1.F7MUQP Arachis hypogaea HOM05D006184 ORTHO05D007862 0.0e+00 1253.8 649 92.0
Lalb_Chr17g0345001 Lupinus albus HOM05D006184 ORTHO05D007862 0.0e+00 1248.0 647 92.1
Medtr3g462970 Medicago truncatula HOM05D006184 ORTHO05D007862 0.0e+00 1248.0 647 91.7
Psat5g162200 Pisum sativum HOM05D006184 ORTHO05D007862 0.0e+00 1246.9 647 92.0
Glyma.11G176200 Glycine max HOM05D006184 ORTHO05D007862 0.0e+00 1242.3 651 91.9
COL.COLO4_19110 Corchorus olitorius HOM05D006184 ORTHO05D007862 0.0e+00 1238.0 648 90.3
Duzib168G0250 Durio zibethinus HOM05D006184 ORTHO05D007862 0.0e+00 1235.3 648 89.8
Gohir.D03G117800 Gossypium hirsutum HOM05D006184 ORTHO05D007862 0.0e+00 1233.8 651 90.3
Gohir.A03G049500 Gossypium hirsutum HOM05D006184 ORTHO05D007862 0.0e+00 1232.2 648 90.6
Gorai.003G124300 Gossypium raimondii HOM05D006184 ORTHO05D007862 0.0e+00 1231.5 648 90.4
Thecc.09G305300 Theobroma cacao HOM05D006184 ORTHO05D007862 0.0e+00 1230.3 651 89.2
Cfa011654 Carpinus fangiana HOM05D006184 ORTHO05D007862 0.0e+00 1227.2 645 90.2
Prupe.6G060700 Prunus persica HOM05D006184 ORTHO05D007862 0.0e+00 1224.9 648 89.5
CiPaw.13G080700 Carya illinoinensis HOM05D006184 ORTHO05D007862 0.0e+00 1222.2 647 89.5
QL01p026813 Quercus lobata HOM05D006184 ORTHO05D007862 0.0e+00 1222.2 650 89.2
FvH4_3g38200 Fragaria vesca HOM05D006184 ORTHO05D007862 0.0e+00 1221.8 651 89.6
PGR102G1950 Punica granatum HOM05D006184 ORTHO05D007862 0.0e+00 1221.8 648 89.5
MD11G1080300 Malus domestica HOM05D006184 ORTHO05D007862 0.0e+00 1220.7 647 89.3
MD03G1074000 Malus domestica HOM05D006184 ORTHO05D007862 0.0e+00 1219.9 650 89.1
RcHm_v2.0_Chr5g0068641 Rosa chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1219.5 651 89.2
FAN21G1896 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1219.1 651 89.4
FAN25G1982 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1216.8 651 89.6
Atru.chr3.4272 Acer truncatum HOM05D006184 ORTHO05D007862 0.0e+00 1216.4 650 89.2
FAN11G1847 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1213.7 651 88.9
FAN16G1207 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1212.6 645 89.8
CsaV3_1G036050 Cucumis sativus L. HOM05D006184 ORTHO05D007862 0.0e+00 1212.2 650 89.2
Manes.01G164200 Manihot esculenta HOM05D006184 ORTHO05D007862 0.0e+00 1210.7 652 89.3
MELO3C020563.2 Cucumis melo HOM05D006184 ORTHO05D007862 0.0e+00 1209.9 648 89.0
Eucgr.B02273 Eucalyptus grandis HOM05D006184 ORTHO05D007862 0.0e+00 1208.7 648 89.2
Hma1.2p1_0227F.1_g096310 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 0.0e+00 1204.5 645 88.5
Lj1A141T56 Lonicera japonica HOM05D006184 ORTHO05D007862 0.0e+00 1204.5 645 87.9
ECA248G3465 Erigeron canadensis HOM05D006184 ORTHO05D007862 0.0e+00 1203.3 646 87.6
Manes.02G121696 Manihot esculenta HOM05D006184 ORTHO05D007862 0.0e+00 1202.2 650 88.5
ClCG03G000880 Citrullus lanatus HOM05D006184 ORTHO05D007862 0.0e+00 1201.4 648 88.3
Ciclev10027988m.g Citrus clementina HOM05D006184 ORTHO05D007862 0.0e+00 1201.0 649 87.8
EL10Ac7g16128 Beta vulgaris HOM05D006184 ORTHO05D007862 0.0e+00 1196.0 648 86.9
CSS0002743 Camellia sinensis var. sinensis HOM05D006184 ORTHO05D007862 0.0e+00 1194.9 645 88.2
Sed0012033 Sechium edule HOM05D006184 ORTHO05D007862 0.0e+00 1193.3 648 87.8
DCAR_007390 Daucus carota HOM05D006184 ORTHO05D007862 0.0e+00 1190.3 647 87.2
Ah.15g099710 Amaranthus hybridus HOM05D006184 ORTHO05D007862 0.0e+00 1189.1 648 86.6
MBI05_g03463_MAGBIO Magnolia biondii HOM05D006184 ORTHO05D007862 0.0e+00 1188.3 645 87.0
Hund04886 Selenicereus undatus HOM05D006184 ORTHO05D007862 0.0e+00 1187.9 651 86.0
Nitab4.5_0001970g0070 Nicotiana tabacum HOM05D006184 ORTHO05D007862 0.0e+00 1186.4 645 87.1
Nn2g13623 Nelumbo nucifera HOM05D006184 ORTHO05D007862 0.0e+00 1186.0 643 86.9
Lsat_1_v5_gn_5_158421 Lactuca sativa HOM05D006184 ORTHO05D007862 0.0e+00 1185.2 643 86.9
GSVIVG01024789001 Vitis vinifera HOM05D006184 ORTHO05D007862 0.0e+00 1184.9 639 88.3
Cpa.g.sc112.53 Carica papaya HOM05D006184 ORTHO05D007862 0.0e+00 1184.5 648 87.5
Rhsim13G0072000 Rhododendron simsii HOM05D006184 ORTHO05D007862 0.0e+00 1184.5 645 86.5
AUR62001683 Chenopodium quinoa HOM05D006184 ORTHO05D007862 0.0e+00 1183.7 648 86.4
Sp4g12340 Schrenkiella parvula HOM05D006184 ORTHO05D007862 0.0e+00 1183.7 648 86.7
Ah.08g220740 Amaranthus hybridus HOM05D006184 ORTHO05D007862 0.0e+00 1182.5 648 85.6
CARHR122950 Cardamine hirsuta HOM05D006184 ORTHO05D007862 0.0e+00 1182.2 651 86.6
Thhalv10016370m.g Eutrema salsugineum HOM05D006184 ORTHO05D007862 0.0e+00 1182.2 645 87.1
AT2G29630 Arabidopsis thaliana HOM05D006184 ORTHO05D007862 0.0e+00 1181.8 648 86.6
Nitab4.5_0000102g0140 Nicotiana tabacum HOM05D006184 ORTHO05D007862 0.0e+00 1181.8 645 86.7
Cc01_g13950 Coffea canephora HOM05D006184 ORTHO05D007862 0.0e+00 1181.4 645 86.4
HanXRQChr13g0388411 Helianthus annuus HOM05D006184 ORTHO05D007862 0.0e+00 1180.6 645 86.7
Sc12g0000880 Simmondsia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1180.2 645 85.9
Aqoxy4G02661 Aquilegia oxysepala HOM05D006184 ORTHO05D007862 0.0e+00 1179.9 643 86.6
TAR633G0598 Trochodendron aralioides HOM05D006184 ORTHO05D007862 0.0e+00 1179.9 643 86.6
AL4G24380 Arabidopsis lyrata HOM05D006184 ORTHO05D007862 0.0e+00 1179.5 649 86.3
Carub.0004s1072 Capsella rubella HOM05D006184 ORTHO05D007862 0.0e+00 1178.3 652 86.0
HanXRQChr10g0298731 Helianthus annuus HOM05D006184 ORTHO05D007862 0.0e+00 1177.5 646 86.5
Actinidia38827 Actinidia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1176.8 645 87.1
BcaC02g11044 Brassica carinata HOM05D006184 ORTHO05D007862 0.0e+00 1175.6 652 86.2
C04p21210 Brassica napus HOM05D006184 ORTHO05D007862 0.0e+00 1175.6 652 86.2
Oeu009379.1 Olea europaea HOM05D006184 ORTHO05D007862 0.0e+00 1175.2 645 85.4
AUR62020099 Chenopodium quinoa HOM05D006184 ORTHO05D007862 0.0e+00 1173.3 649 85.8
BcaB02g10267 Brassica carinata HOM05D006184 ORTHO05D007862 0.0e+00 1172.5 650 86.0
A05p15770 Brassica napus HOM05D006184 ORTHO05D007862 0.0e+00 1172.5 652 86.2
BolC4t23646H Brassica oleracea HOM05D006184 ORTHO05D007862 0.0e+00 1171.4 652 85.9
BraA05t20491Z Brassica rapa HOM05D006184 ORTHO05D007862 0.0e+00 1171.4 652 86.0
Peaxi162Scf00216g00033 Petunia axillaris HOM05D006184 ORTHO05D007862 0.0e+00 1170.6 646 86.4
Peaxi162Scf00451g00511 Petunia axillaris HOM05D006184 ORTHO05D007862 0.0e+00 1169.5 646 86.1
Potri.009G043200 Populus trichocarpa HOM05D006184 ORTHO05D007862 0.0e+00 1169.5 651 87.6
Solyc06g006080.3 Solanum lycopersicum HOM05D006184 ORTHO05D007862 0.0e+00 1169.5 645 85.6
Sopen06g002030 Solanum pennellii HOM05D006184 ORTHO05D007862 0.0e+00 1169.5 645 85.6
Sc06g0008420 Simmondsia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1168.3 648 85.0
SalBow2G2183 Salvia bowleyana HOM05D006184 ORTHO05D007862 0.0e+00 1166.8 646 86.1
Aa31LG5G7380 Aethionema arabicum HOM05D006184 ORTHO05D007862 0.0e+00 1162.9 646 84.7
Potri.001G249200 Populus trichocarpa HOM05D006184 ORTHO05D007862 0.0e+00 1161.4 651 87.1
PGSC0003DMG400004151 Solanum tuberosum HOM05D006184 ORTHO05D007862 0.0e+00 1160.2 645 85.1
ATR0564G389 Amborella trichopoda HOM05D006184 ORTHO05D007862 0.0e+00 1159.4 645 85.3
MSTRG.24765 Avicennia marina HOM05D006184 ORTHO05D007862 0.0e+00 1154.8 646 84.5
TWI79G1750 Tripterygium wilfordii HOM05D006184 ORTHO05D007862 0.0e+00 1154.8 648 84.7
CDE03G0407 Ceratophyllum demersum HOM05D006184 ORTHO05D007862 0.0e+00 1153.7 643 84.3
Sabra09G0030600 Salix brachista HOM05D006184 ORTHO05D007862 0.0e+00 1148.7 631 87.2
Haze_24258 Corylus avellana HOM05D006184 ORTHO05D007862 0.0e+00 1140.9 645 85.7
TPR.G13280 Trifolium pratense HOM05D006184 ORTHO05D007862 0.0e+00 1140.6 647 85.9
Oeu049272.2 Olea europaea HOM05D006184 ORTHO05D007862 0.0e+00 1137.9 713 77.1
Migut.G00281 Erythranthe guttata HOM05D006184 ORTHO05D007862 0.0e+00 1137.1 649 84.4
Dinv28618 Davidia involucrata HOM05D006184 ORTHO05D007862 0.0e+00 1119.0 598 88.8
Os03g0679700 Oryza sativa ssp. japonica HOM05D006184 ORTHO05D007862 0.0e+00 1118.2 624 83.8
Zm00001eb051950 Zea mays HOM05D006184 ORTHO05D007862 0.0e+00 1117.8 627 83.6
CDE04G0688 Ceratophyllum demersum HOM05D006184 ORTHO05D007862 0.0e+00 1106.7 585 88.5
CAN.G780.2 Capsicum annuum HOM05D006184 ORTHO05D007862 0.0e+00 1106.3 646 82.7
SGA_v2.0_scaffold142G35644 Striga asiatica HOM05D006184 ORTHO05D007862 0.0e+00 1096.3 648 80.6
SHI12345 Sapria himalayana HOM05D006184 ORTHO05D007862 6.7e-311 1070.1 671 77.3
Pp3c16_8630 Physcomitrium patens HOM05D006184 ORTHO05D007862 6.6e-306 1053.5 625 81.0
Pp3c25_5720 Physcomitrium patens HOM05D006184 ORTHO05D007862 1.4e-300 1035.8 599 81.8
Cfa015458 Carpinus fangiana HOM05D006184 ORTHO05D007862 7.0e-300 1033.5 613 82.1
AagrBONN_evm.TU.Sc2ySwM_117.2039 Anthoceros agrestis HOM05D006184 ORTHO05D007862 6.0e-299 1030.4 575 83.7
HPP92_012628 Vanilla planifolia HOM05D006184 ORTHO05D007862 1.0e-298 1029.6 541 88.2
Mapoly0078s0008 Marchantia polymorpha HOM05D006184 ORTHO05D007862 1.6e-296 1022.3 579 83.1
SMO272G0033 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 7.1e-292 1006.9 606 78.5
SMO165G0141 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 5.6e-289 997.3 554 83.8
CBR_g30996 Chara braunii HOM05D006184 ORTHO05D007862 4.5e-254 881.3 477 86.6
Cre05.g240850 Chlamydomonas reinhardtii HOM05D006184 ORTHO05D007862 6.5e-229 797.7 513 73.3
Sabra16G0151300 Salix brachista HOM05D006184 ORTHO05D007862 5.0e-205 718.4 424 84.0
vmacro02987 Vaccinium macrocarpon HOM05D006184 ORTHO05D007862 3.8e-197 692.2 394 82.2
Haze_26876 Corylus avellana HOM05D006184 ORTHO05D007862 1.4e-191 673.7 585 59.1
RcHm_v2.0_Chr5g0068681 Rosa chinensis HOM05D006184 ORTHO05D007862 2.3e-149 533.5 267 95.1
SMO165G0069 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 1.9e-124 450.7 594 44.8
SEGI_15306 Sequoiadendron giganteum HOM05D006184 ORTHO05D007862 9.5e-71 272.3 217 62.2
Nn2g11393 Nelumbo nucifera HOM05D006184 ORTHO05D007862 1.4e-69 268.5 125 96.8
Nn2g11392 Nelumbo nucifera HOM05D006184 ORTHO05D007862 2.3e-48 198.0 163 62.0
Nn2g11394 Nelumbo nucifera HOM05D006184 ORTHO05D049308 2.9e-43 181.0 101 83.2
RcHm_v2.0_Chr5g0068691 Rosa chinensis HOM05D006184 ORTHO05D049308 3.5e-41 174.1 96 86.5
Actinidia16074 Actinidia chinensis HOM05D006184 ORTHO05D007862 4.5e-36 157.1 150 58.0
Hma1.2p1_2020F.1_g311280 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 3.4e-20 104.4 53 92.5
Hma1.2p1_0315F.1_g122560 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 3.8e-19 100.9 53 90.6
Ah.02g117460 Amaranthus hybridus HOM05D000595 ORTHO05D004141 1.4e-08 65.9 32 93.8


User provided reference genes

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