Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G085700 Phaseolus vulgaris HOM05D005363 ORTHO05D006607 0.0e+00 1349.7 716 100.0
Glyma.12G219100 Glycine max HOM05D005363 ORTHO05D006607 0.0e+00 1245.7 717 91.8
Lalb_Chr25g0286791 Lupinus albus HOM05D005363 ORTHO05D006607 0.0e+00 1127.9 712 85.3
arahy.Tifrunner.gnm1.ann1.42XSYF Arachis hypogaea HOM05D005363 ORTHO05D006607 0.0e+00 1121.3 714 85.0
arahy.Tifrunner.gnm1.ann1.3P80NP Arachis hypogaea HOM05D005363 ORTHO05D006607 0.0e+00 1116.3 712 84.6
Psat2g184560 Pisum sativum HOM05D005363 ORTHO05D006607 0.0e+00 1110.1 711 84.0
Lj3g0015043 Lotus japonicus HOM05D005363 ORTHO05D006607 0.0e+00 1097.8 720 82.9
Medtr2g081100 Medicago truncatula HOM05D005363 ORTHO05D006607 0.0e+00 1097.8 701 84.0
CiPaw.11G177000 Carya illinoinensis HOM05D005363 ORTHO05D006607 1.8e-309 1065.4 721 77.5
TAR629G3355 Trochodendron aralioides HOM05D005363 ORTHO05D006607 2.5e-306 1055.0 724 76.7
CANSAT11G0579 Cannabis sativa HOM05D005363 ORTHO05D006607 2.7e-305 1051.6 723 77.6
Thecc.07G070700 Theobroma cacao HOM05D005363 ORTHO05D006607 2.7e-305 1051.6 728 75.1
Ciclev10007579m.g Citrus clementina HOM05D005363 ORTHO05D006607 2.3e-304 1048.5 729 76.4
CSS0003917 Camellia sinensis var. sinensis HOM05D005363 ORTHO05D006607 4.5e-300 1034.2 717 77.1
QL08p017669 Quercus lobata HOM05D005363 ORTHO05D006607 4.5e-300 1034.2 775 71.9
TPR.G32857 Trifolium pratense HOM05D005363 ORTHO05D006607 1.2e-297 1026.2 719 77.7
Duzib170G0704 Durio zibethinus HOM05D005363 ORTHO05D006607 1.0e-296 1023.1 726 76.2
MD03G1218100 Malus domestica HOM05D005363 ORTHO05D006607 4.0e-296 1021.1 722 74.4
Manes.15G082900 Manihot esculenta HOM05D005363 ORTHO05D006607 3.4e-295 1018.1 726 75.2
MD11G1235900 Malus domestica HOM05D005363 ORTHO05D006607 1.3e-294 1016.1 721 75.0
Potri.001G407300 Populus trichocarpa HOM05D005363 ORTHO05D006607 2.2e-294 1015.4 728 75.5
Cpa.g.sc12.44 Carica papaya HOM05D005363 ORTHO05D006607 1.8e-293 1012.3 714 76.8
Actinidia35283 Actinidia chinensis HOM05D005363 ORTHO05D006607 1.6e-292 1009.2 724 75.7
RcHm_v2.0_Chr5g0036071 Rosa chinensis HOM05D005363 ORTHO05D006607 3.5e-292 1008.1 716 75.1
Nn1g03887 Nelumbo nucifera HOM05D005363 ORTHO05D006607 2.3e-291 1005.4 721 74.9
Prupe.4G191100 Prunus persica HOM05D005363 ORTHO05D006607 2.9e-291 1005.0 718 73.7
Sc03g0009580 Simmondsia chinensis HOM05D005363 ORTHO05D006607 6.6e-291 1003.8 724 74.4
Dinv08347 Davidia involucrata HOM05D005363 ORTHO05D006607 2.5e-290 1001.9 742 73.9
COL.COLO4_09485 Corchorus olitorius HOM05D005363 ORTHO05D006607 1.2e-289 999.6 728 75.7
GSVIVG01014441001 Vitis vinifera HOM05D005363 ORTHO05D006607 1.2e-289 999.6 727 74.4
MSTRG.5819 Avicennia marina HOM05D005363 ORTHO05D006607 5.2e-288 994.2 732 73.0
PGR083G1158 Punica granatum HOM05D005363 ORTHO05D006607 2.0e-287 992.3 727 74.3
Migut.J00972 Erythranthe guttata HOM05D005363 ORTHO05D006607 5.8e-287 990.7 724 73.9
Gorai.009G430700 Gossypium raimondii HOM05D005363 ORTHO05D006607 3.7e-286 988.0 723 73.7
Gohir.D05G362100 Gossypium hirsutum HOM05D005363 ORTHO05D006607 5.4e-285 984.2 723 73.3
PSO832G2870 Papaver somniferum HOM05D005363 ORTHO05D006607 2.7e-284 981.9 730 72.7
HanXRQChr03g0077211 Helianthus annuus HOM05D005363 ORTHO05D006607 1.0e-283 979.9 721 72.4
Oeu009902.1 Olea europaea HOM05D005363 ORTHO05D006607 1.0e-283 979.9 730 74.0
PSO210G7030 Papaver somniferum HOM05D005363 ORTHO05D006607 1.0e-283 979.9 730 72.6
CsaV3_3G044350 Cucumis sativus L. HOM05D005363 ORTHO05D006607 5.0e-283 977.6 716 74.4
CARHR267540 Cardamine hirsuta HOM05D005363 ORTHO05D006607 3.3e-282 974.9 722 72.3
ClCG11G018480 Citrullus lanatus HOM05D005363 ORTHO05D006607 4.3e-282 974.5 710 73.9
Sed0012869 Sechium edule HOM05D005363 ORTHO05D006607 4.3e-282 974.5 705 74.0
Aqoxy1G03881 Aquilegia oxysepala HOM05D005363 ORTHO05D006607 7.3e-282 973.8 726 72.5
SalBow3G2312 Salvia bowleyana HOM05D005363 ORTHO05D006607 1.6e-281 972.6 749 71.4
ECA240G2604 Erigeron canadensis HOM05D005363 ORTHO05D006607 4.7e-281 971.1 726 73.1
FAN21G3123 Fragaria x ananassa HOM05D005363 ORTHO05D006607 4.0e-280 968.0 709 71.9
Sp6g16300 Schrenkiella parvula HOM05D005363 ORTHO05D006607 5.2e-280 967.6 722 72.9
Thhalv10012804m.g Eutrema salsugineum HOM05D005363 ORTHO05D006607 4.4e-279 964.5 723 72.9
Aa31LG3G10220 Aethionema arabicum HOM05D005363 ORTHO05D006607 2.9e-278 961.8 723 71.6
BcaC04g20356 Brassica carinata HOM05D005363 ORTHO05D006607 8.3e-278 960.3 640 77.7
AL8G29590 Arabidopsis lyrata HOM05D005363 ORTHO05D006607 1.1e-277 959.9 702 74.1
FAN11G3021 Fragaria x ananassa HOM05D005363 ORTHO05D006607 2.4e-277 958.7 715 72.3
FvH4_3g21040 Fragaria vesca HOM05D005363 ORTHO05D006607 5.4e-277 957.6 715 72.3
AT5G54260 Arabidopsis thaliana HOM05D005363 ORTHO05D006607 1.2e-276 956.4 725 72.7
Carub.0008s1460 Capsella rubella HOM05D005363 ORTHO05D006607 2.1e-276 955.7 606 80.0
EL10Ac4g08052 Beta vulgaris HOM05D005363 ORTHO05D006607 2.7e-276 955.3 739 69.6
SGA_v2.0_scaffold13G06767 Striga asiatica HOM05D005363 ORTHO05D006607 4.6e-276 954.5 738 70.6
Lsat_1_v5_gn_9_95600 Lactuca sativa HOM05D005363 ORTHO05D006607 7.8e-276 953.7 730 73.2
vmacro09564 Vaccinium macrocarpon HOM05D005363 ORTHO05D006607 1.0e-275 953.4 684 74.6
BcaB08g35781 Brassica carinata HOM05D005363 ORTHO05D006607 1.7e-275 952.6 721 72.5
Haze_09533 Corylus avellana HOM05D005363 ORTHO05D006607 1.7e-275 952.6 792 68.2
FAN25G3415 Fragaria x ananassa HOM05D005363 ORTHO05D006607 3.9e-275 951.4 715 71.6
VMungo1080G1535 Vigna mungo HOM05D005363 ORTHO05D006607 8.6e-275 950.3 476 97.3
Hma1.2p1_1176F.1_g264200 Hydrangea macrophylla HOM05D005363 ORTHO05D006607 7.3e-274 947.2 741 69.2
HPP92_026561 Vanilla planifolia HOM05D005363 ORTHO05D006607 1.1e-272 943.3 683 71.2
BraA10t43250Z Brassica rapa HOM05D005363 ORTHO05D006607 1.4e-272 943.0 730 71.4
ATR0693G020 Amborella trichopoda HOM05D005363 ORTHO05D006607 3.1e-272 941.8 712 69.4
BolC9t57330H Brassica oleracea HOM05D005363 ORTHO05D006607 4.0e-272 941.4 730 71.1
C09p44570 Brassica napus HOM05D005363 ORTHO05D006607 3.4e-271 938.3 650 75.5
Sabra16G0268700 Salix brachista HOM05D005363 ORTHO05D006607 2.9e-270 935.3 716 72.3
A10p11550 Brassica napus HOM05D005363 ORTHO05D006607 4.9e-270 934.5 652 75.2
Sopen09g004090 Solanum pennellii HOM05D005363 ORTHO05D006607 3.2e-269 931.8 560 81.8
HPP92_026534 Vanilla planifolia HOM05D005363 ORTHO05D006607 3.5e-268 928.3 716 68.4
SHI33827 Sapria himalayana HOM05D005363 ORTHO05D006607 3.0e-267 925.2 719 66.8
Hund02186 Selenicereus undatus HOM05D005363 ORTHO05D006607 2.5e-266 922.2 713 70.1
Sabra16G0270900 Salix brachista HOM05D005363 ORTHO05D006607 4.3e-266 921.4 656 74.5
Gohir.D01G056400 Gossypium hirsutum HOM05D005363 ORTHO05D006607 9.6e-266 920.2 713 70.4
THA.LOC104813315 Tarenaya hassleriana HOM05D005363 ORTHO05D006607 1.6e-265 919.5 505 86.7
Cc06_g05460 Coffea canephora HOM05D005363 ORTHO05D006607 1.4e-264 916.4 497 87.5
CAN.G824.3 Capsicum annuum HOM05D005363 ORTHO05D006607 8.9e-264 913.7 663 74.2
MBI15_g19746_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 1.1e-261 906.7 681 69.9
Os04g0635900 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 4.3e-258 894.8 722 66.8
RhsimUnG0258300 Rhododendron simsii HOM05D005363 ORTHO05D006607 2.8e-257 892.1 658 71.6
Zm00001eb069270 Zea mays HOM05D005363 ORTHO05D006607 3.6e-257 891.7 726 66.4
Lj8C160T16 Lonicera japonica HOM05D005363 ORTHO05D006607 5.3e-256 887.9 734 69.2
DCAR_018424 Daucus carota HOM05D005363 ORTHO05D006607 2.0e-255 885.9 646 74.8
Peaxi162Scf00290g00111 Petunia axillaris HOM05D005363 ORTHO05D006607 1.9e-253 879.4 623 75.1
Gorai.002G076500 Gossypium raimondii HOM05D005363 ORTHO05D006607 5.4e-253 877.9 729 67.6
unitig_8.g4146 Utricularia gibba HOM05D005363 ORTHO05D006607 6.0e-252 874.4 727 64.8
MELO3C018187.2 Cucumis melo HOM05D005363 ORTHO05D006607 1.3e-246 856.7 711 67.7
Gohir.A04G025700 Gossypium hirsutum HOM05D005363 ORTHO05D006607 4.2e-245 851.7 737 66.2
AUR62029306 Chenopodium quinoa HOM05D005363 ORTHO05D006607 7.6e-239 830.9 793 58.9
AUR62015595 Chenopodium quinoa HOM05D005363 ORTHO05D006607 1.5e-231 806.6 524 75.8
FAN16G0276 Fragaria x ananassa HOM05D005363 ORTHO05D006607 9.7e-226 787.3 727 62.7
Gohir.A04G026000 Gossypium hirsutum HOM05D005363 ORTHO05D006607 1.3e-225 786.9 626 69.6
Pp3c24_2350 Physcomitrium patens HOM05D005363 ORTHO05D006607 2.7e-220 769.2 549 67.9
Mapoly0023s0117 Marchantia polymorpha HOM05D005363 ORTHO05D006607 1.3e-217 760.4 697 60.8
AagrBONN_evm.TU.Sc2ySwM_117.2240 Anthoceros agrestis HOM05D005363 ORTHO05D006607 1.4e-216 756.9 682 60.7
SMO347G0170 Selaginella moellendorffii HOM05D005363 ORTHO05D006607 2.8e-201 706.1 493 68.4
CDE12G0672 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 1.6e-196 690.3 399 82.0
Atru.chr2.2913 Acer truncatum HOM05D005363 ORTHO05D006607 1.6e-183 647.1 337 89.6
CBR_g48040 Chara braunii HOM05D005363 ORTHO05D006607 1.8e-179 633.6 544 57.4
Ca_01813_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 6.6e-174 615.1 360 83.6
Zm00001eb171920 Zea mays HOM05D005363 ORTHO05D006607 1.1e-173 614.4 466 62.2
Nitab4.5_0001969g0080 Nicotiana tabacum HOM05D005363 ORTHO05D006607 5.8e-170 602.1 647 56.9
Os08g0177600 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 9.8e-170 601.3 526 56.3
Eucgr.F01076 Eucalyptus grandis HOM05D005363 ORTHO05D006607 2.8e-164 583.2 550 64.0
Nitab4.5_0007366g0050 Nicotiana tabacum HOM05D005363 ORTHO05D006607 4.7e-148 529.3 520 61.3
Cre12.g556911 Chlamydomonas reinhardtii HOM05D005363 ORTHO05D006607 4.3e-133 479.6 502 50.2
unitig_13.g31430 Utricularia gibba HOM05D005363 ORTHO05D006607 4.9e-129 466.1 499 54.3
MCO13G379 Micromonas commoda HOM05D005363 ORTHO05D006607 1.8e-123 447.6 578 43.6
SEGI_22122 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 2.5e-120 437.2 251 78.9
PRCOL_00003292 Prasinoderma coloniale HOM05D005363 ORTHO05D006607 8.5e-113 412.1 531 44.8
Cfa025591 Carpinus fangiana HOM05D005363 ORTHO05D006607 1.3e-100 371.7 511 38.9
Nitab4.5_0007366g0060 Nicotiana tabacum HOM05D005363 ORTHO05D006607 6.3e-100 369.4 214 83.6
Atru.chr2.2912 Acer truncatum HOM05D005363 ORTHO05D006607 2.9e-97 360.5 355 64.5
PGSC0003DMG400002669 Solanum tuberosum HOM05D005363 ORTHO05D006607 2.4e-91 340.9 176 90.3
CAN.G397.4 Capsicum annuum HOM05D005363 ORTHO05D006607 9.4e-88 328.9 263 66.2
MBI09_g27609_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 5.5e-72 276.6 157 82.2
Eucgr.C01186 Eucalyptus grandis HOM05D005363 ORTHO05D006607 2.6e-61 241.1 365 52.6
CDE12G0057 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 8.3e-60 236.1 163 69.9
Ca_01800_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 5.4e-59 233.4 247 64.0
Ca_30473_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 2.0e-58 231.5 235 66.0
CDE12G0487 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 1.9e-56 224.9 304 49.7
SEGI_32923 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 6.0e-42 176.8 96 84.4
GSVIVG01001519001 Vitis vinifera HOM05D005363 ORTHO05D006607 2.5e-32 144.8 99 74.7
SEGI_35588 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 1.7e-28 132.1 297 39.4
CDE12G0011 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 5.1e-25 120.6 76 81.6
Cc06_g05450 Coffea canephora HOM05D005363 ORTHO05D006607 1.4e-19 102.4 220 47.7
arahy.Tifrunner.gnm1.ann1.Q8WXS4 Arachis hypogaea HOM05D005363 ORTHO05D006607 1.9e-19 102.1 102 57.8
THA.LOC104811844 Tarenaya hassleriana HOM05D005363 ORTHO05D006607 2.8e-15 88.2 196 48.5
GSVIVG01004486001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.2e-10 72.8 196 35.7
GSVIVG01002726001 Vitis vinifera HOM05D005363 ORTHO05D006607 1.3e-07 62.8 161 35.4
arahy.Tifrunner.gnm1.ann1.9SD0MH Arachis hypogaea HOM05D005363 ORTHO05D015967 3.7e-07 61.2 47 63.8
GSVIVG01001488001 Vitis vinifera HOM05D005363 ORTHO05D006607 1.4e-06 59.3 161 34.2


User provided reference genes

Program Settings