Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G007200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 1.6e-135 486.1 245 100.0
Phvul.004G006200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 6.3e-76 288.1 247 65.6
VMungo0464G2068 Vigna mungo HOM05D006496 ORTHO05D008390 2.6e-69 266.2 232 63.8
Glyma.13G333300 Glycine max HOM05D006496 ORTHO05D008390 3.5e-50 202.6 247 48.6
Glyma.07G118700 Glycine max HOM05D006496 ORTHO05D008390 4.3e-48 195.7 237 48.9
Phvul.L002943 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 1.6e-39 167.2 251 43.4
VMungo1080G1046 Vigna mungo HOM05D006496 ORTHO05D008390 4.7e-39 165.6 241 44.8
Lj3g0009171 Lotus japonicus HOM05D006496 ORTHO05D008390 1.8e-30 137.1 235 40.9
Lalb_Chr22g0349991 Lupinus albus HOM05D006496 ORTHO05D008390 3.1e-30 136.3 209 43.5
TPR.G34303 Trifolium pratense HOM05D006496 ORTHO05D008390 1.3e-28 131.0 219 41.6
TPR.G34315 Trifolium pratense HOM05D006496 ORTHO05D008390 4.9e-28 129.0 224 38.8
Ca_01342_v3 Cicer arietinum L. HOM05D006496 ORTHO05D008390 8.3e-28 128.3 219 39.3
arahy.Tifrunner.gnm1.ann1.7PT1R0 Arachis hypogaea HOM05D006496 ORTHO05D008390 9.2e-27 124.8 215 40.0
Medtr2g096520 Medicago truncatula HOM05D006496 ORTHO05D008390 1.7e-25 120.6 266 34.6
arahy.Tifrunner.gnm1.ann1.4RYS79 Arachis hypogaea HOM05D006496 ORTHO05D008390 2.3e-25 120.2 216 38.4
Psat5g284120 Pisum sativum HOM05D006496 ORTHO05D008390 1.9e-24 117.1 208 39.9
Glyma.15G040900 Glycine max HOM05D006496 ORTHO05D008390 1.2e-23 114.4 169 43.8
Medtr4g008590 Medicago truncatula HOM05D006496 ORTHO05D008390 8.1e-23 111.7 243 33.7
FvH4_3g35002 Fragaria vesca HOM05D006496 ORTHO05D008390 5.8e-21 105.5 223 35.0
FAN16G2573 Fragaria x ananassa HOM05D006496 ORTHO05D008390 7.6e-21 105.1 224 37.1
FAN25G3002 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.3e-20 104.4 232 37.1
Psat5g284080 Pisum sativum HOM05D006496 ORTHO05D008390 2.2e-20 103.6 207 35.7
FAN21G2388 Fragaria x ananassa HOM05D006496 ORTHO05D008390 6.4e-20 102.1 224 36.6
FAN11G2800 Fragaria x ananassa HOM05D006496 ORTHO05D008390 5.4e-19 99.0 221 34.4
RcHm_v2.0_Chr5g0062921 Rosa chinensis HOM05D006496 ORTHO05D008390 9.2e-19 98.2 212 34.4
QL01p033240 Quercus lobata HOM05D006496 ORTHO05D008390 7.8e-18 95.1 207 33.3
QL01p033291 Quercus lobata HOM05D006496 ORTHO05D008390 2.3e-17 93.6 207 33.3
Phvul.004G007400 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 5.1e-17 92.4 90 52.2
Medtr2g096500 Medicago truncatula HOM05D006496 ORTHO05D008485 3.3e-16 89.7 182 37.4
RcHm_v2.0_Chr5g0062931 Rosa chinensis HOM05D006496 ORTHO05D008390 1.1e-14 84.7 207 32.9
TWI75G0988 Tripterygium wilfordii HOM05D006496 ORTHO05D008390 1.1e-14 84.7 210 32.9
Prupe.6G084300 Prunus persica HOM05D006496 ORTHO05D008390 3.1e-14 83.2 269 30.5
MD03G1099400 Malus domestica HOM05D006496 ORTHO05D008390 6.9e-14 82.0 237 30.0
Oeu058535.1 Olea europaea HOM05D006496 ORTHO05D008390 6.9e-14 82.0 201 28.4
ECA247G0375 Erigeron canadensis HOM05D006496 ORTHO05D008390 9.0e-14 81.6 205 29.8
MD03G1099500 Malus domestica HOM05D006496 ORTHO05D008390 1.2e-13 81.3 201 33.3
Ciclev10028859m.g Citrus clementina HOM05D006496 ORTHO05D008390 1.5e-13 80.9 252 30.6
Potri.009G027600 Populus trichocarpa HOM05D006496 ORTHO05D008390 1.5e-13 80.9 230 30.4
GSVIVG01025031001 Vitis vinifera HOM05D006496 ORTHO05D008390 2.0e-13 80.5 211 30.3
Atru.chr3.3823 Acer truncatum HOM05D006496 ORTHO05D008390 5.8e-13 79.0 245 29.4
ECA248G1113 Erigeron canadensis HOM05D006496 ORTHO05D008390 7.6e-13 78.6 201 30.3
Lj3g0006193 Lotus japonicus HOM05D006496 ORTHO05D008390 7.6e-13 78.6 61 62.3
MD11G1113700 Malus domestica HOM05D006496 ORTHO05D008390 9.9e-13 78.2 291 30.9
SGA_v2.0_scaffold61G21263 Striga asiatica HOM05D006496 ORTHO05D008390 1.7e-12 77.4 198 33.3
Lsat_1_v5_gn_5_167360 Lactuca sativa HOM05D006496 ORTHO05D008390 2.9e-12 76.6 199 29.1
Rhsim13G0086700 Rhododendron simsii HOM05D006496 ORTHO05D008390 4.9e-12 75.9 197 27.9
Migut.D02127 Erythranthe guttata HOM05D006496 ORTHO05D008390 6.4e-12 75.5 198 27.8
Actinidia37238 Actinidia chinensis HOM05D006496 ORTHO05D008390 8.4e-12 75.1 201 30.8
DCAR_015607 Daucus carota HOM05D006496 ORTHO05D008390 1.1e-11 74.7 205 29.8
Actinidia07064 Actinidia chinensis HOM05D006496 ORTHO05D008390 1.9e-11 73.9 59 61.0
Manes.04G031000 Manihot esculenta HOM05D006496 ORTHO05D008390 1.9e-11 73.9 263 29.3
BraA10t43786Z Brassica rapa HOM05D006496 ORTHO05D008390 5.4e-11 72.4 206 31.6
Cpa.g.sc190.31 Carica papaya HOM05D006496 ORTHO05D008390 5.4e-11 72.4 218 28.9
Carub.0008s2046 Capsella rubella HOM05D006496 ORTHO05D008390 1.6e-10 70.9 205 32.2
A10p17060 Brassica napus HOM05D006496 ORTHO05D008390 3.5e-10 69.7 209 30.6
CARHR273380 Cardamine hirsuta HOM05D006496 ORTHO05D008390 3.5e-10 69.7 207 29.0
HanXRQChr04g0106921 Helianthus annuus HOM05D006496 ORTHO05D008390 3.5e-10 69.7 202 30.2
CSS0000664 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 4.6e-10 69.3 201 30.3
Prupe.6G084200 Prunus persica HOM05D006496 ORTHO05D008390 4.6e-10 69.3 218 31.2
Sopen11g030740 Solanum pennellii HOM05D006496 ORTHO05D008390 4.6e-10 69.3 247 27.9
BolC9t58098H Brassica oleracea HOM05D006496 ORTHO05D008390 6.0e-10 68.9 204 30.4
CAN.G420.5 Capsicum annuum HOM05D006496 ORTHO05D008390 6.0e-10 68.9 246 28.9
SalBow3G1961 Salvia bowleyana HOM05D006496 ORTHO05D008390 6.0e-10 68.9 195 28.2
THA.LOC104810806 Tarenaya hassleriana HOM05D006496 ORTHO05D008390 1.0e-09 68.2 218 28.0
C09p52290 Brassica napus HOM05D006496 ORTHO05D008390 1.3e-09 67.8 209 30.1
Sp6g21470 Schrenkiella parvula HOM05D006496 ORTHO05D008390 1.3e-09 67.8 209 32.1
PGSC0003DMG400015535 Solanum tuberosum HOM05D006496 ORTHO05D008390 1.3e-09 67.8 196 27.0
BcaC04g19631 Brassica carinata HOM05D006496 ORTHO05D008390 1.7e-09 67.4 209 30.1
BolC3t13791H Brassica oleracea HOM05D006496 ORTHO05D008390 1.7e-09 67.4 205 30.2
A03p11480 Brassica napus HOM05D006496 ORTHO05D008390 2.3e-09 67.0 204 29.9
BraA03t10462Z Brassica rapa HOM05D006496 ORTHO05D008390 2.3e-09 67.0 204 29.9
AL8G36350 Arabidopsis lyrata HOM05D006496 ORTHO05D008390 3.0e-09 66.6 205 30.7
Hma1.2p1_0035F.1_g022050 Hydrangea macrophylla HOM05D006496 ORTHO05D008390 3.0e-09 66.6 66 53.0
Dinv06145 Davidia involucrata HOM05D006496 ORTHO05D008390 3.9e-09 66.2 51 54.9
AT5G59800 Arabidopsis thaliana HOM05D006496 ORTHO05D008390 5.1e-09 65.9 63 52.4
CiPaw.13G099300 Carya illinoinensis HOM05D006496 ORTHO05D008390 6.6e-09 65.5 232 25.0
Thhalv10014093m.g Eutrema salsugineum HOM05D006496 ORTHO05D008390 1.1e-08 64.7 63 54.0
BcaC01g06549 Brassica carinata HOM05D006496 ORTHO05D008390 1.5e-08 64.3 205 29.8
Cc01_g12300 Coffea canephora HOM05D006496 ORTHO05D008390 1.5e-08 64.3 207 25.6
vmacro03111 Vaccinium macrocarpon HOM05D006496 ORTHO05D008390 1.5e-08 64.3 70 48.6
BcaB08g36218 Brassica carinata HOM05D006496 ORTHO05D008390 2.5e-08 63.5 88 43.2
CSS0042381 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 2.5e-08 63.5 202 28.2
Lsat_1_v5_gn_9_22140 Lactuca sativa HOM05D006496 ORTHO05D008390 2.5e-08 63.5 193 30.1
C03p13280 Brassica napus HOM05D006496 ORTHO05D008390 3.3e-08 63.2 205 29.8
HanXRQChr01g0009831 Helianthus annuus HOM05D006496 ORTHO05D008390 4.3e-08 62.8 227 26.4
EL10Ac7g15965 Beta vulgaris HOM05D006496 ORTHO05D008390 9.6e-08 61.6 216 29.2
Prupe.6G084500 Prunus persica HOM05D006496 ORTHO05D008390 1.3e-07 61.2 59 54.2
Ah.08g218920 Amaranthus hybridus HOM05D006496 ORTHO05D008390 1.6e-07 60.8 244 26.6
COL.COLO4_18451 Corchorus olitorius HOM05D006496 ORTHO05D008390 1.6e-07 60.8 80 42.5
DCAR_018892 Daucus carota HOM05D006496 ORTHO05D008390 1.6e-07 60.8 178 26.4
QL01p033212 Quercus lobata HOM05D006496 ORTHO05D008390 3.6e-07 59.7 66 45.5
Lj2A1055T49 Lonicera japonica HOM05D006496 ORTHO05D008390 6.2e-07 58.9 87 41.4
Hund04996 Selenicereus undatus HOM05D006496 ORTHO05D008390 6.2e-07 58.9 283 25.8
Duzib093G1405 Durio zibethinus HOM05D006496 ORTHO05D004692 8.1e-07 58.5 251 28.3
FAN25G1110 Fragaria x ananassa HOM05D006496 ORTHO05D008390 8.1e-07 58.5 215 26.5
Duzib168G2252 Durio zibethinus HOM05D006496 ORTHO05D008390 1.1e-06 58.2 98 40.8
AUR62001835 Chenopodium quinoa HOM05D006496 ORTHO05D008390 1.8e-06 57.4 256 28.5
Nitab4.5_0003498g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 1.8e-06 57.4 182 28.0
Nitab4.5_0009215g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 1.8e-06 57.4 185 27.0
Sc06g0008220 Simmondsia chinensis HOM05D006496 ORTHO05D008390 2.4e-06 57.0 68 45.6
AUR62009623 Chenopodium quinoa HOM05D006496 ORTHO05D008390 3.1e-06 56.6 193 28.0
Sabra09G0018800 Salix brachista HOM05D006496 ORTHO05D008390 5.3e-06 55.8 203 27.6
HanXRQChr01g0009851 Helianthus annuus HOM05D006496 ORTHO05D008390 9.0e-06 55.1 244 25.4
Solyc11g073080.3 Solanum lycopersicum HOM05D006496 ORTHO05D008390 9.0e-06 55.1 46 47.8


User provided reference genes

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