Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G131900 Phaseolus vulgaris HOM05D001514 ORTHO05D005209 7.5e-121 437.2 219 100.0
Glyma.17G050300 Glycine max HOM05D001514 ORTHO05D005209 1.6e-110 402.9 219 90.9
Glyma.13G109300 Glycine max HOM05D001514 ORTHO05D005209 4.6e-110 401.4 219 90.4
VMungo1215G3125 Vigna mungo HOM05D001514 ORTHO05D005209 3.9e-109 398.3 202 96.5
Lj4g0013364 Lotus japonicus HOM05D001514 ORTHO05D005209 5.8e-97 357.8 219 79.9
Medtr4g125510 Medicago truncatula HOM05D001514 ORTHO05D005209 2.4e-95 352.4 219 79.0
TPR.G9427 Trifolium pratense HOM05D001514 ORTHO05D005209 2.3e-93 345.9 220 77.3
arahy.Tifrunner.gnm1.ann1.0DN5L0 Arachis hypogaea HOM05D001514 ORTHO05D005209 8.6e-93 344.0 219 75.3
arahy.Tifrunner.gnm1.ann1.0TW07M Arachis hypogaea HOM05D001514 ORTHO05D005209 8.6e-93 344.0 219 75.3
arahy.Tifrunner.gnm1.ann1.I7BKR8 Arachis hypogaea HOM05D001514 ORTHO05D005209 8.6e-93 344.0 219 75.3
Ca_21314_v3 Cicer arietinum L. HOM05D001514 ORTHO05D005209 1.9e-92 342.8 220 75.5
Psat4g016720 Pisum sativum HOM05D001514 ORTHO05D005209 9.6e-92 340.5 222 74.3
Lalb_Chr07g0181101 Lupinus albus HOM05D001514 ORTHO05D005209 4.7e-91 338.2 220 72.3
Medtr2g063927 Medicago truncatula HOM05D001514 ORTHO05D005209 1.8e-90 336.3 219 74.4
Thecc.09G079100 Theobroma cacao HOM05D001514 ORTHO05D005209 1.7e-85 319.7 215 69.3
Haze_10270 Corylus avellana HOM05D001514 ORTHO05D005209 3.0e-85 318.9 215 68.8
COL.COLO4_18112 Corchorus olitorius HOM05D001514 ORTHO05D005209 1.1e-84 317.0 215 68.8
Duzib168G1760 Durio zibethinus HOM05D001514 ORTHO05D005209 3.3e-84 315.5 217 68.7
TWI60G0494 Tripterygium wilfordii HOM05D001514 ORTHO05D005209 1.3e-83 313.5 218 67.0
Potri.006G143400 Populus trichocarpa HOM05D001514 ORTHO05D005209 3.6e-83 312.0 217 65.4
CSS0005970 Camellia sinensis var. sinensis HOM05D001514 ORTHO05D005209 6.2e-83 311.2 215 67.0
CiPaw.03G207800 Carya illinoinensis HOM05D001514 ORTHO05D005209 1.8e-82 309.7 215 65.1
Nn8g38685 Nelumbo nucifera HOM05D001514 ORTHO05D005209 2.4e-82 309.3 213 68.1
QL11p000460 Quercus lobata HOM05D001514 ORTHO05D005209 2.4e-82 309.3 215 66.0
Cpa.g.sc280.6 Carica papaya HOM05D001514 ORTHO05D005209 3.1e-82 308.9 215 67.9
Dinv42376 Davidia involucrata HOM05D001514 ORTHO05D005209 4.0e-82 308.5 215 66.5
EL10Ac8g19111 Beta vulgaris HOM05D001514 ORTHO05D005209 5.3e-82 308.1 215 66.5
Prupe.7G201200 Prunus persica HOM05D001514 ORTHO05D005209 1.5e-81 306.6 222 65.3
TAR626G0523 Trochodendron aralioides HOM05D001514 ORTHO05D005209 1.5e-81 306.6 211 67.8
TAR626G1304 Trochodendron aralioides HOM05D001514 ORTHO05D005209 1.5e-81 306.6 211 67.8
Ciclev10012695m.g Citrus clementina HOM05D001514 ORTHO05D005209 2.0e-81 306.2 215 67.4
Hund08725 Selenicereus undatus HOM05D001514 ORTHO05D005209 2.0e-81 306.2 217 65.9
Cc06_g12020 Coffea canephora HOM05D001514 ORTHO05D005209 3.4e-81 305.4 215 66.5
Manes.03G199800 Manihot esculenta HOM05D001514 ORTHO05D005209 3.4e-81 305.4 217 65.4
TAR383G0900 Trochodendron aralioides HOM05D001514 ORTHO05D005209 5.8e-81 304.7 219 64.8
Gohir.A13G191300 Gossypium hirsutum HOM05D001514 ORTHO05D005209 9.9e-81 303.9 215 66.0
Nitab4.5_0011363g0010 Nicotiana tabacum HOM05D001514 ORTHO05D005209 1.3e-80 303.5 215 66.5
Eucgr.C00825 Eucalyptus grandis HOM05D001514 ORTHO05D005209 2.2e-80 302.8 215 65.6
MBI13_g11335_MAGBIO Magnolia biondii HOM05D001514 ORTHO05D005209 2.2e-80 302.8 211 65.4
CsaV3_2G001190 Cucumis sativus L. HOM05D001514 ORTHO05D005209 2.9e-80 302.4 216 67.6
Atru.chr7.1692 Acer truncatum HOM05D001514 ORTHO05D005209 4.9e-80 301.6 216 64.8
Gohir.D13G196700 Gossypium hirsutum HOM05D001514 ORTHO05D005209 6.4e-80 301.2 215 65.1
Hma1.2p1_0928F.1_g237710 Hydrangea macrophylla HOM05D001514 ORTHO05D005209 6.4e-80 301.2 210 66.2
Gorai.013G225400 Gossypium raimondii HOM05D001514 ORTHO05D005209 1.1e-79 300.4 215 65.1
GSVIVG01015097001 Vitis vinifera HOM05D001514 ORTHO05D005209 9.3e-79 297.4 216 64.4
AUR62025186 Chenopodium quinoa HOM05D001514 ORTHO05D005209 2.1e-78 296.2 215 62.8
ClCG11G001470 Citrullus lanatus HOM05D001514 ORTHO05D005209 2.7e-78 295.8 241 62.7
Solyc12g009090.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.6e-78 295.0 216 64.8
MD15G1215700 Malus domestica HOM05D001514 ORTHO05D005209 1.0e-77 293.9 211 63.0
MD15G1215800 Malus domestica HOM05D001514 ORTHO05D005209 1.0e-77 293.9 215 62.3
PGR142G1966 Punica granatum HOM05D001514 ORTHO05D005209 1.0e-77 293.9 215 65.6
PGSC0003DMG400000323 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.0e-77 293.9 216 64.4
MSTRG.6002 Avicennia marina HOM05D001514 ORTHO05D005209 1.3e-77 293.5 215 65.6
Sopen12g004040 Solanum pennellii HOM05D001514 ORTHO05D005209 1.3e-77 293.5 216 64.4
Haze_25985 Corylus avellana HOM05D001514 ORTHO05D005209 3.0e-77 292.4 252 57.1
Haze_25993 Corylus avellana HOM05D001514 ORTHO05D005209 3.0e-77 292.4 252 57.1
Lsat_1_v5_gn_7_35041 Lactuca sativa HOM05D001514 ORTHO05D005209 6.6e-77 291.2 220 65.0
SGA_v2.0_scaffold97G29140 Striga asiatica HOM05D001514 ORTHO05D005209 6.6e-77 291.2 215 64.2
Sabra06G0113700 Salix brachista HOM05D001514 ORTHO05D005209 1.1e-76 290.4 245 58.0
Sed0009954 Sechium edule HOM05D001514 ORTHO05D005209 1.1e-76 290.4 221 64.7
AL4G21890 Arabidopsis lyrata HOM05D001514 ORTHO05D005209 1.5e-76 290.0 215 60.9
Migut.J00937 Erythranthe guttata HOM05D001514 ORTHO05D005209 1.9e-76 289.7 218 63.8
SalBow6G1458 Salvia bowleyana HOM05D001514 ORTHO05D005209 2.5e-76 289.3 215 63.7
MELO3C004649.2 Cucumis melo HOM05D001514 ORTHO05D005209 3.3e-76 288.9 215 66.5
Aa31sc437G10 Aethionema arabicum HOM05D001514 ORTHO05D005209 5.6e-76 288.1 215 60.9
RcHm_v2.0_Chr2g0094521 Rosa chinensis HOM05D001514 ORTHO05D005209 7.4e-76 287.7 219 62.6
HanXRQChr09g0237811 Helianthus annuus HOM05D001514 ORTHO05D005209 9.6e-76 287.3 221 65.2
Nitab4.5_0000073g0250 Nicotiana tabacum HOM05D001514 ORTHO05D005209 2.1e-75 286.2 217 63.1
BcaB02g10157 Brassica carinata HOM05D001514 ORTHO05D005209 3.6e-75 285.4 215 60.9
Thhalv10002659m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 4.8e-75 285.0 215 60.5
AT2G28230 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 6.2e-75 284.6 215 60.0
A07p18760 Brassica napus HOM05D001514 ORTHO05D005209 8.1e-75 284.3 215 60.5
THA.LOC104808891 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 8.1e-75 284.3 215 60.9
FvH4_1g08420 Fragaria vesca HOM05D001514 ORTHO05D005209 1.1e-74 283.9 222 60.4
Sp4g11040 Schrenkiella parvula HOM05D001514 ORTHO05D005209 4.0e-74 282.0 215 60.0
BcaC02g10956 Brassica carinata HOM05D001514 ORTHO05D005209 5.3e-74 281.6 215 59.5
C04p23290 Brassica napus HOM05D001514 ORTHO05D005209 5.3e-74 281.6 215 59.5
SalBow3G1655 Salvia bowleyana HOM05D001514 ORTHO05D005209 5.3e-74 281.6 210 63.3
Carub.0004s0911 Capsella rubella HOM05D001514 ORTHO05D005209 3.4e-73 278.9 215 59.1
ECA233G5402 Erigeron canadensis HOM05D001514 ORTHO05D005209 3.4e-73 278.9 221 62.0
BraA07t29585Z Brassica rapa HOM05D001514 ORTHO05D005209 5.8e-73 278.1 210 61.0
Carub.0004s0910 Capsella rubella HOM05D001514 ORTHO05D005209 7.6e-73 277.7 215 58.6
HPP92_009229 Vanilla planifolia HOM05D001514 ORTHO05D005209 2.2e-72 276.2 211 59.7
CDE05G2440 Ceratophyllum demersum HOM05D001514 ORTHO05D005209 2.9e-72 275.8 216 60.6
Lj7A685T53 Lonicera japonica HOM05D001514 ORTHO05D005209 2.9e-72 275.8 257 55.3
BolC4t23831H Brassica oleracea HOM05D001514 ORTHO05D005209 1.4e-71 273.5 210 59.5
ATR0598G338 Amborella trichopoda HOM05D001514 ORTHO05D005209 4.2e-71 271.9 213 58.2
AUR62028988 Chenopodium quinoa HOM05D001514 ORTHO05D005209 4.2e-71 271.9 194 64.9
vmacro06328 Vaccinium macrocarpon HOM05D001514 ORTHO05D005209 7.1e-71 271.2 244 56.6
Aqoxy7G01056 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 9.3e-71 270.8 217 58.1
Nitab4.5_0001866g0080 Nicotiana tabacum HOM05D001514 ORTHO05D005209 1.2e-70 270.4 207 63.3
THA.LOC104826585 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 1.2e-70 270.4 240 55.4
PSO210G4222 Papaver somniferum HOM05D001514 ORTHO05D005209 4.6e-70 268.5 221 58.8
Solyc05g041170.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.3e-69 266.2 214 58.4
AT4G09070 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 5.1e-69 265.0 215 55.8
PSO386G0176 Papaver somniferum HOM05D001514 ORTHO05D005209 8.7e-69 264.2 221 57.5
Aqoxy7G01057 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 8.1e-67 257.7 217 55.3
Psat0s2317g0240 Pisum sativum HOM05D001514 ORTHO05D005209 2.6e-65 252.7 213 57.7
Actinidia29922 Actinidia chinensis HOM05D001514 ORTHO05D005209 6.5e-64 248.1 180 63.9
Solyc10g049510.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 6.5e-64 248.1 215 55.3
Os09g0443500 Oryza sativa ssp. japonica HOM05D001514 ORTHO05D005209 8.4e-64 247.7 221 52.9
Solyc10g054950.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.5e-63 246.1 215 56.3
Peaxi162Scf00928g00034 Petunia axillaris HOM05D001514 ORTHO05D005209 3.2e-63 245.7 210 56.7
Zm00001eb314270 Zea mays HOM05D001514 ORTHO05D005209 2.1e-62 243.0 224 51.8
Thhalv10017586m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 7.9e-62 241.1 215 52.1
Carub.0006s2765 Capsella rubella HOM05D001514 ORTHO05D005209 2.5e-60 236.1 213 49.3
Rhsim03G0229200 Rhododendron simsii HOM05D001514 ORTHO05D005209 1.2e-57 227.3 165 66.1
Sabra06G0112300 Salix brachista HOM05D001514 ORTHO05D005209 2.6e-57 226.1 163 64.4
Psat0s4474g0080 Pisum sativum HOM05D001514 ORTHO05D005209 1.3e-56 223.8 216 51.9
CARHR121150 Cardamine hirsuta HOM05D001514 ORTHO05D005209 3.8e-56 222.2 215 48.8
CANSAT11G2059 Cannabis sativa HOM05D001514 ORTHO05D005209 1.4e-55 220.3 157 65.6
Sc08g0008840 Simmondsia chinensis HOM05D001514 ORTHO05D005209 1.9e-55 219.9 159 64.2
Sc08g0009330 Simmondsia chinensis HOM05D001514 ORTHO05D005209 1.9e-55 219.9 159 64.2
Solyc10g055100.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.5e-55 218.4 215 52.6
SMO141G0192 Selaginella moellendorffii HOM05D001514 ORTHO05D005209 2.1e-54 216.5 210 47.1
FAN26G1993 Fragaria x ananassa HOM05D001514 ORTHO05D005209 4.3e-52 208.8 164 61.6
Solyc10g055020.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 9.7e-52 207.6 221 48.9
PGSC0003DMG400027872 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.3e-51 207.2 181 54.1
Solyc10g055160.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.6e-51 206.8 185 54.1
Actinidia38471 Actinidia chinensis HOM05D001514 ORTHO05D005209 3.7e-51 205.7 194 54.6
Nitab4.5_0000073g0220 Nicotiana tabacum HOM05D001514 ORTHO05D005209 8.2e-51 204.5 136 69.9
Mapoly0097s0017 Marchantia polymorpha HOM05D001514 ORTHO05D005209 2.4e-50 203.0 217 41.5
DCAR_024739 Daucus carota HOM05D001514 ORTHO05D005209 1.2e-49 200.7 141 65.2
Solyc10g054980.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.6e-49 199.5 217 47.9
FAN26G0729 Fragaria x ananassa HOM05D001514 ORTHO05D005209 1.7e-48 196.8 184 54.9
PGSC0003DMG400024425 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.4e-47 193.7 170 54.1
CAN.G2532.1 Capsicum annuum HOM05D001514 ORTHO05D005209 5.5e-47 191.8 160 57.5
DCAR_026438 Daucus carota HOM05D001514 ORTHO05D005209 1.2e-46 190.7 142 63.4
CAN.G1963.7 Capsicum annuum HOM05D001514 ORTHO05D005209 1.6e-46 190.3 164 56.7
Sopen10g024920 Solanum pennellii HOM05D001514 ORTHO05D005209 4.4e-44 182.2 171 52.6
AagrBONN_evm.TU.Sc2ySwM_344.5098 Anthoceros agrestis HOM05D001514 ORTHO05D005209 1.7e-43 180.3 190 44.2
Pp3c7_2780 Physcomitrium patens HOM05D001514 ORTHO05D005209 1.7e-43 180.3 208 39.9
CBR_g11153 Chara braunii HOM05D001514 ORTHO05D005209 8.2e-43 177.9 216 38.4
PGSC0003DMG400040125 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.4e-42 177.2 209 44.5
unitig_749.g14240 Utricularia gibba HOM05D001514 ORTHO05D005209 6.9e-42 174.9 135 61.5
Solyc10g055010.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.5e-39 166.4 143 54.5
Solyc10g055070.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.5e-39 165.2 165 51.5
CAN.G1774.14 Capsicum annuum HOM05D001514 ORTHO05D005209 4.7e-38 162.2 145 56.6
CAN.G299.3 Capsicum annuum HOM05D001514 ORTHO05D005209 8.8e-37 157.9 118 63.6
PGSC0003DMG400003348 Solanum tuberosum HOM05D001514 ORTHO05D005209 4.5e-33 145.6 120 57.5
Sopen10g024960 Solanum pennellii HOM05D001514 ORTHO05D005209 5.9e-33 145.2 121 59.5
Solyc10g055150.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.0e-32 144.4 132 56.8
Solyc10g049550.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.1e-31 141.0 132 53.8
Solyc10g055130.2 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.2e-31 139.0 114 60.5
Manes.15G009400 Manihot esculenta HOM05D001514 ORTHO05D005209 9.4e-31 137.9 121 56.2
MD02G1088400 Malus domestica HOM05D001514 ORTHO05D005209 1.0e-29 134.4 167 41.3
Sopen10g024890 Solanum pennellii HOM05D001514 ORTHO05D005209 1.4e-26 124.0 100 59.0
Sopen10g024880 Solanum pennellii HOM05D000004 ORTHO05D000002 2.0e-17 93.6 90 54.4
Sopen12g011120 Solanum pennellii HOM05D001514 ORTHO05D005209 3.5e-17 92.8 73 57.5
DCAR_024738 Daucus carota HOM05D001514 ORTHO05D005209 8.5e-16 88.2 78 55.1
Rhsim03G0228900 Rhododendron simsii HOM05D001514 ORTHO05D005209 3.2e-15 86.3 52 73.1
CAN.G1963.4 Capsicum annuum HOM05D001514 ORTHO05D005209 7.2e-15 85.1 66 54.5
Potri.005G126902 Populus trichocarpa HOM05D001514 ORTHO05D005209 8.0e-14 81.6 77 46.8
Oeu055661.2 Olea europaea HOM05D001514 ORTHO05D005209 2.3e-13 80.1 52 69.2
Solyc10g055040.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.2e-12 77.8 143 35.0
Cre11.g476900 Chlamydomonas reinhardtii HOM05D001514 ORTHO05D005209 4.4e-12 75.9 163 26.4
AT2G28020 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 9.2e-10 68.2 66 43.9
Solyc12g062270.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.7e-08 63.9 62 48.4
BcaC07g40291 Brassica carinata HOM05D001514 ORTHO05D005209 2.1e-06 57.0 45 64.4
C08p34050 Brassica napus HOM05D001514 ORTHO05D005209 2.1e-06 57.0 45 64.4
BolC8t51003H Brassica oleracea HOM05D001514 ORTHO05D005209 2.1e-06 57.0 53 58.5
ECA233G2563 Erigeron canadensis HOM05D000517 ORTHO05D000751 3.6e-06 56.2 90 37.8


User provided reference genes

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