Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G112600 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 1.5e-64 249.2 115 100.0
VMungo1215G2752 Vigna mungo HOM05D004365 ORTHO05D005123 8.6e-60 233.4 115 92.2
Glyma.07G241200 Glycine max HOM05D004365 ORTHO05D005123 2.0e-56 222.2 115 88.7
Nn4g25611 Nelumbo nucifera HOM05D004365 ORTHO05D005123 1.4e-49 199.5 115 74.8
CiPaw.01G139700 Carya illinoinensis HOM05D004365 ORTHO05D005123 3.1e-49 198.4 115 73.9
Sed0001961 Sechium edule HOM05D004365 ORTHO05D005123 3.1e-49 198.4 115 73.9
Sed0006030 Sechium edule HOM05D004365 ORTHO05D005123 3.1e-49 198.4 115 73.9
Ah.13g072000 Amaranthus hybridus HOM05D004365 ORTHO05D005123 5.3e-49 197.6 115 73.9
DCAR_023347 Daucus carota HOM05D004365 ORTHO05D005123 5.3e-49 197.6 115 75.7
QL06p011635 Quercus lobata HOM05D004365 ORTHO05D005123 5.3e-49 197.6 114 73.7
CANSAT54G2312 Cannabis sativa HOM05D004365 ORTHO05D005123 6.9e-49 197.2 115 73.0
Haze_01277 Corylus avellana HOM05D004365 ORTHO05D005123 6.9e-49 197.2 115 73.9
HanXRQChr05g0145921 Helianthus annuus HOM05D004365 ORTHO05D005123 6.9e-49 197.2 115 73.9
GSVIVG01035016001 Vitis vinifera HOM05D004365 ORTHO05D005123 9.0e-49 196.8 115 73.9
Hma1.2p1_0013F.1_g008720 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 1.2e-48 196.4 115 73.0
Manes.15G005400 Manihot esculenta HOM05D004365 ORTHO05D005123 1.2e-48 196.4 115 73.9
TAR365G0998 Trochodendron aralioides HOM05D004365 ORTHO05D005123 1.2e-48 196.4 115 72.2
ClCG05G006460 Citrullus lanatus HOM05D004365 ORTHO05D005123 1.5e-48 196.1 115 72.2
ECA246G3323 Erigeron canadensis HOM05D004365 ORTHO05D005123 1.5e-48 196.1 115 73.0
Aqoxy2G02775 Aquilegia oxysepala HOM05D004365 ORTHO05D005123 2.0e-48 195.7 115 73.9
PGR004G2507 Punica granatum HOM05D004365 ORTHO05D005123 2.0e-48 195.7 115 73.9
CSS0008168 Camellia sinensis var. sinensis HOM05D004365 ORTHO05D005123 2.6e-48 195.3 115 73.0
Sc05g0009630 Simmondsia chinensis HOM05D004365 ORTHO05D005123 2.6e-48 195.3 115 73.0
MSTRG.21775 Avicennia marina HOM05D004365 ORTHO05D005123 3.4e-48 194.9 115 73.9
Oeu016485.1 Olea europaea HOM05D004365 ORTHO05D005123 3.4e-48 194.9 115 73.0
Prupe.1G122000 Prunus persica HOM05D004365 ORTHO05D005123 3.4e-48 194.9 115 72.2
CDE02G0371 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 4.4e-48 194.5 115 73.0
Lsat_1_v5_gn_6_116841 Lactuca sativa HOM05D004365 ORTHO05D005123 4.4e-48 194.5 115 71.3
Lalb_Chr18g0058831 Lupinus albus HOM05D004365 ORTHO05D005123 4.4e-48 194.5 115 73.0
Nitab4.5_0000647g0090 Nicotiana tabacum HOM05D004365 ORTHO05D005123 4.4e-48 194.5 115 73.9
Peaxi162Scf00164g01133 Petunia axillaris HOM05D004365 ORTHO05D005123 4.4e-48 194.5 115 73.9
RcHm_v2.0_Chr4g0424591 Rosa chinensis HOM05D004365 ORTHO05D005123 4.4e-48 194.5 115 73.0
Solyc05g053430.3 Solanum lycopersicum HOM05D004365 ORTHO05D005123 4.4e-48 194.5 115 73.9
Sopen05g031930 Solanum pennellii HOM05D004365 ORTHO05D005123 4.4e-48 194.5 115 73.9
PGSC0003DMG400027213 Solanum tuberosum HOM05D004365 ORTHO05D005123 4.4e-48 194.5 115 73.9
CDE09G0896 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 5.8e-48 194.1 115 73.0
FvH4_4g19480 Fragaria vesca HOM05D004365 ORTHO05D005123 5.8e-48 194.1 115 73.0
FAN07G2773 Fragaria x ananassa HOM05D004365 ORTHO05D005123 5.8e-48 194.1 115 73.0
unitig_22.g6354 Utricularia gibba HOM05D004365 ORTHO05D005123 5.8e-48 194.1 115 73.9
Actinidia13364 Actinidia chinensis HOM05D004365 ORTHO05D005123 7.6e-48 193.7 115 72.2
Phvul.009G256100 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 7.6e-48 193.7 115 73.0
Glyma.09G037400 Glycine max HOM05D004365 ORTHO05D005123 9.9e-48 193.4 115 73.9
PSO761G0124 Papaver somniferum HOM05D004365 ORTHO05D005123 1.3e-47 193.0 115 73.0
Lj4g0028172 Lotus japonicus HOM05D004365 ORTHO05D005123 1.7e-47 192.6 115 73.0
Medtr2g034520 Medicago truncatula HOM05D004365 ORTHO05D005123 1.7e-47 192.6 115 73.0
Lj6g0010863 Lotus japonicus HOM05D004365 ORTHO05D005123 2.2e-47 192.2 115 72.2
Lalb_Chr08g0234431 Lupinus albus HOM05D004365 ORTHO05D005123 2.2e-47 192.2 112 73.2
Eucgr.H02666 Eucalyptus grandis HOM05D004365 ORTHO05D005123 2.9e-47 191.8 115 73.0
TWI73G0828 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 2.9e-47 191.8 115 71.3
TPR.G5757 Trifolium pratense HOM05D004365 ORTHO05D005123 3.8e-47 191.4 115 72.2
PSO210G6722 Papaver somniferum HOM05D004365 ORTHO05D005123 4.9e-47 191.0 115 72.2
Aa31LG8G4020 Aethionema arabicum HOM05D004365 ORTHO05D005123 6.4e-47 190.7 115 71.3
Ca_01870_v3 Cicer arietinum L. HOM05D004365 ORTHO05D005123 6.4e-47 190.7 115 71.3
Cc03_g00970 Coffea canephora HOM05D004365 ORTHO05D005123 6.4e-47 190.7 115 72.2
Psat6g078760 Pisum sativum HOM05D004365 ORTHO05D005123 6.4e-47 190.7 115 73.0
Ciclev10006256m.g Citrus clementina HOM05D004365 ORTHO05D005123 8.4e-47 190.3 115 69.6
MD16G1157100 Malus domestica HOM05D004365 ORTHO05D005123 8.4e-47 190.3 115 70.4
MD13G1156200 Malus domestica HOM05D004365 ORTHO05D005123 1.4e-46 189.5 115 71.3
HPP92_002026 Vanilla planifolia HOM05D004365 ORTHO05D005123 1.4e-46 189.5 115 70.4
THA.LOC104820300 Tarenaya hassleriana HOM05D004365 ORTHO05D005123 2.4e-46 188.7 115 69.6
Glyma.15G142700 Glycine max HOM05D004365 ORTHO05D005123 3.2e-46 188.3 115 72.2
Thecc.04G297700 Theobroma cacao HOM05D004365 ORTHO05D005123 3.2e-46 188.3 115 69.6
AT3G16980 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 4.2e-46 188.0 115 69.6
Thhalv10021989m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 4.2e-46 188.0 115 69.6
AL3G29960 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 5.4e-46 187.6 115 68.7
BcaC09g50324 Brassica carinata HOM05D004365 ORTHO05D005123 7.1e-46 187.2 115 68.7
BcaNung00211 Brassica carinata HOM05D004365 ORTHO05D005123 7.1e-46 187.2 115 68.7
A01p21300 Brassica napus HOM05D004365 ORTHO05D005123 7.1e-46 187.2 115 68.7
Gohir.A01G034300 Gossypium hirsutum HOM05D004365 ORTHO05D005123 7.1e-46 187.2 115 68.7
Gohir.D01G023535 Gossypium hirsutum HOM05D004365 ORTHO05D005123 7.1e-46 187.2 115 68.7
Gorai.002G030000 Gossypium raimondii HOM05D004365 ORTHO05D005123 7.1e-46 187.2 115 68.7
SMO174G0170 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 7.1e-46 187.2 114 68.4
SMO364G0316 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 7.1e-46 187.2 115 68.7
Carub.0003s1673 Capsella rubella HOM05D004365 ORTHO05D005123 9.3e-46 186.8 115 68.7
TWI09G0163 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 9.3e-46 186.8 115 69.6
vmacro15189 Vaccinium macrocarpon HOM05D004365 ORTHO05D005123 9.3e-46 186.8 135 63.7
Duzib052G0793 Durio zibethinus HOM05D004365 ORTHO05D005123 1.2e-45 186.4 115 68.7
Mapoly0028s0097 Marchantia polymorpha HOM05D004365 ORTHO05D005123 1.2e-45 186.4 115 67.8
SEGI_37796 Sequoiadendron giganteum HOM05D004365 ORTHO05D005123 2.1e-45 185.7 115 68.7
Pp3c18_17910 Physcomitrium patens HOM05D004365 ORTHO05D005123 2.7e-45 185.3 115 67.8
AL7G38770 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 3.5e-45 184.9 115 67.8
AT4G16265 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 3.5e-45 184.9 115 67.8
Carub.0007s2525 Capsella rubella HOM05D004365 ORTHO05D005123 3.5e-45 184.9 115 67.8
Dinv44302 Davidia involucrata HOM05D004365 ORTHO05D005123 3.5e-45 184.9 115 69.6
Sabra08G0080800 Salix brachista HOM05D004365 ORTHO05D005123 4.6e-45 184.5 115 67.8
BcaB08g34342 Brassica carinata HOM05D004365 ORTHO05D005123 6.0e-45 184.1 115 67.0
BcaC07g37975 Brassica carinata HOM05D004365 ORTHO05D005123 6.0e-45 184.1 115 67.0
A08p12300 Brassica napus HOM05D004365 ORTHO05D005123 6.0e-45 184.1 115 67.0
BolC8t48354H Brassica oleracea HOM05D004365 ORTHO05D005123 6.0e-45 184.1 115 67.0
Thhalv10026603m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 6.0e-45 184.1 115 67.8
Potri.008G106900 Populus trichocarpa HOM05D004365 ORTHO05D005123 6.0e-45 184.1 115 67.8
Duzib212G0477 Durio zibethinus HOM05D004365 ORTHO05D005123 7.9e-45 183.7 115 68.7
Cpa.g.sc9.86 Carica papaya HOM05D004365 ORTHO05D005123 1.0e-44 183.3 115 67.8
CARHR222650 Cardamine hirsuta HOM05D004365 ORTHO05D005123 1.3e-44 183.0 115 67.8
Nitab4.5_0006365g0010 Nicotiana tabacum HOM05D004365 ORTHO05D005123 1.3e-44 183.0 134 63.4
Sabra10G0110500 Salix brachista HOM05D004365 ORTHO05D005123 1.3e-44 183.0 115 67.0
CARHR092230 Cardamine hirsuta HOM05D004365 ORTHO05D005123 6.6e-44 180.6 115 67.8
arahy.Tifrunner.gnm1.ann1.MX4EIU Arachis hypogaea HOM05D004365 ORTHO05D005123 8.7e-44 180.3 114 65.8
arahy.Tifrunner.gnm1.ann1.79Y4XM Arachis hypogaea HOM05D004365 ORTHO05D005123 5.6e-43 177.6 105 73.3
arahy.Tifrunner.gnm1.ann1.C4ZZV2 Arachis hypogaea HOM05D004365 ORTHO05D005123 5.6e-43 177.6 105 73.3
Hund11961 Selenicereus undatus HOM05D004365 ORTHO05D005123 9.6e-43 176.8 107 70.1
Hund03115 Selenicereus undatus HOM05D004365 ORTHO05D005123 1.3e-42 176.4 105 71.4
Zm00001eb088460 Zea mays HOM05D004365 ORTHO05D005123 2.1e-42 175.6 115 62.6
EL10Ac3g05464 Beta vulgaris HOM05D004365 ORTHO05D005123 4.8e-42 174.5 115 66.1
Migut.N00047 Erythranthe guttata HOM05D004365 ORTHO05D005123 6.2e-42 174.1 105 71.4
A09p28560 Brassica napus HOM05D004365 ORTHO05D005123 1.5e-40 169.5 113 63.7
BraA09t38417Z Brassica rapa HOM05D004365 ORTHO05D005123 1.5e-40 169.5 113 63.7
BolC1t02605H Brassica oleracea HOM05D004365 ORTHO05D005123 2.0e-40 169.1 105 68.6
SalBow2G2782 Salvia bowleyana HOM05D004365 ORTHO05D005123 2.6e-40 168.7 128 61.7
Manes.03G202800 Manihot esculenta HOM05D004365 ORTHO05D005123 4.5e-40 167.9 115 62.6
Os03g0102200 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 4.5e-40 167.9 115 60.9
SpUn0413_0020 Schrenkiella parvula HOM05D004365 ORTHO05D005123 9.9e-40 166.8 105 67.6
BraA08t33228Z Brassica rapa HOM05D004365 ORTHO05D005123 1.7e-39 166.0 105 66.7
Os12g0560400 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 2.9e-39 165.2 105 66.7
HPP92_005120 Vanilla planifolia HOM05D004365 ORTHO05D005123 4.9e-39 164.5 114 58.8
Dinv15193 Davidia involucrata HOM05D004365 ORTHO05D005123 6.4e-39 164.1 97 74.2
TWI53G1753 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 2.4e-38 162.2 114 59.6
BcaC04g21057 Brassica carinata HOM05D004365 ORTHO05D005123 7.1e-38 160.6 112 59.8
C09p36150 Brassica napus HOM05D004365 ORTHO05D005123 9.3e-38 160.2 112 59.8
BolC9t56454H Brassica oleracea HOM05D004365 ORTHO05D005123 9.3e-38 160.2 112 59.8
TWI53G0542 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 1.8e-36 156.0 114 57.9
Sp7g14780 Schrenkiella parvula HOM05D004365 ORTHO05D005123 2.5e-35 152.1 130 54.6
Mapoly0087s0071 Marchantia polymorpha HOM05D004365 ORTHO05D005123 4.3e-35 151.4 115 57.4
TPR.G10905 Trifolium pratense HOM05D004365 ORTHO05D005123 8.1e-34 147.1 88 72.7
VMungo1309G0143 Vigna mungo HOM05D004365 ORTHO05D005123 8.1e-34 147.1 88 71.6
AUR62041403 Chenopodium quinoa HOM05D004365 ORTHO05D005123 5.3e-33 144.4 93 69.9
ATR0665G356 Amborella trichopoda HOM05D004365 ORTHO05D005123 1.5e-32 142.9 88 70.5
arahy.Tifrunner.gnm1.ann1.2XVX11 Arachis hypogaea HOM05D004365 ORTHO05D005123 4.5e-32 141.4 114 55.3
DCAR_027008 Daucus carota HOM05D004365 ORTHO05D005123 4.5e-32 141.4 180 42.8
AUR62016130 Chenopodium quinoa HOM05D004365 ORTHO05D005123 1.0e-31 140.2 81 75.3
Rhsim02G0004900 Rhododendron simsii HOM05D004365 ORTHO05D005123 1.0e-31 140.2 90 71.1
Sabra10G0110300 Salix brachista HOM05D004365 ORTHO05D005123 1.0e-31 140.2 115 56.5
SGA_v2.0_scaffold119G32662 Striga asiatica HOM05D004365 ORTHO05D005123 8.4e-31 137.1 99 63.6
Os07g0615800 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 1.1e-30 136.7 115 51.3
FAN12G3053 Fragaria x ananassa HOM05D004365 ORTHO05D005123 1.4e-30 136.3 80 76.2
FvH4_3g15650 Fragaria vesca HOM05D004365 ORTHO05D005123 9.3e-30 133.7 80 73.8
FAN12G1077 Fragaria x ananassa HOM05D004365 ORTHO05D005123 3.5e-29 131.7 82 72.0
BraA01t02037Z Brassica rapa HOM05D004365 ORTHO05D005123 6.0e-29 131.0 85 68.2
Eucgr.H02672 Eucalyptus grandis HOM05D004365 ORTHO05D005123 7.9e-29 130.6 84 70.2
Atru.chr4.3028 Acer truncatum HOM05D004365 ORTHO05D005123 5.1e-28 127.9 79 68.4
BcaB04g18375 Brassica carinata HOM05D004365 ORTHO05D005123 5.1e-28 127.9 80 68.8
Potri.010G142500 Populus trichocarpa HOM05D004365 ORTHO05D005123 1.9e-27 125.9 93 60.2
Zm00001eb086380 Zea mays HOM05D004365 ORTHO05D005123 1.6e-26 122.9 80 65.0
Zm00001eb230190 Zea mays HOM05D004365 ORTHO05D005123 1.6e-26 122.9 81 64.2
Zm00001eb138580 Zea mays HOM05D004365 ORTHO05D005123 2.8e-26 122.1 81 63.0
COL.COLO4_34649 Corchorus olitorius HOM05D001765 ORTHO05D005123 1.1e-25 120.2 77 66.2
Haze_26633 Corylus avellana HOM05D004365 ORTHO05D005123 5.3e-25 117.9 110 49.1
MCO01G087 Micromonas commoda HOM05D004365 ORTHO05D005123 5.5e-22 107.8 111 45.0
AagrBONN_evm.TU.Sc2ySwM_117.3306 Anthoceros agrestis HOM05D004365 ORTHO05D005123 2.2e-18 95.9 104 42.3
Zm00001eb270680 Zea mays HOM05D004365 ORTHO05D005123 2.8e-18 95.5 64 64.1
Zm00001eb327460 Zea mays HOM05D004365 ORTHO05D005123 8.2e-18 94.0 97 47.4
Hma1.2p1_0096F.1_g047650 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 2.4e-17 92.4 56 71.4
AL7G38230 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 5.3e-17 91.3 61 60.7
SHI00177 Sapria himalayana HOM05D004365 ORTHO05D005123 5.3e-17 91.3 71 54.9
Cre12.g505750 Chlamydomonas reinhardtii HOM05D004365 ORTHO05D005123 3.4e-16 88.6 113 43.4
PRCOL_00000204 Prasinoderma coloniale HOM05D004365 ORTHO05D005123 2.2e-15 85.9 113 41.6
Zm00001eb137030 Zea mays HOM05D004365 ORTHO05D005123 1.4e-14 83.2 54 68.5
Hma1.2p1_0234F.1_g098400 Hydrangea macrophylla HOM05D001088 ORTHO05D005123 1.2e-13 80.1 70 55.7
Mapoly0020s0069 Marchantia polymorpha HOM05D004365 ORTHO05D005123 2.1e-13 79.3 116 34.5
AagrBONN_evm.TU.Sc2ySwM_344.170 Anthoceros agrestis HOM05D001942 ORTHO05D001996 3.9e-12 75.1 105 38.1
BcaB01g01499 Brassica carinata HOM05D004365 ORTHO05D005123 1.1e-11 73.6 49 59.2
Cfa024902 Carpinus fangiana HOM05D004365 ORTHO05D005123 4.1e-09 65.1 74 39.2
Os11g0676650 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 5.0e-07 58.2 37 67.6
Mapoly0122s0031 Marchantia polymorpha HOM05D004365 ORTHO05D253640 2.5e-06 55.8 88 36.4


User provided reference genes

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