Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G321200 Phaseolus vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 2905.9 1487 100.0
VMungo0251G0466 Vigna mungo HOM05D001486 ORTHO05D004921 0.0e+00 2832.7 1488 97.2
Glyma.08G045900 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 2770.7 1487 94.8
Glyma.05G238800 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 2760.3 1487 94.4
Lj4g0010019 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 2639.4 1487 90.4
Ca_17277_v3 Cicer arietinum L. HOM05D001486 ORTHO05D004921 0.0e+00 2630.1 1487 90.1
TPR.G19252 Trifolium pratense HOM05D001486 ORTHO05D004921 0.0e+00 2624.7 1487 89.6
arahy.Tifrunner.gnm1.ann1.WZE3XK Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 2615.5 1487 89.0
arahy.Tifrunner.gnm1.ann1.FK3VI9 Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 2607.8 1480 89.0
Psat7g007960 Pisum sativum HOM05D001486 ORTHO05D004921 0.0e+00 2593.5 1488 88.6
Medtr8g105290 Medicago truncatula HOM05D001486 ORTHO05D004921 0.0e+00 2587.0 1487 88.4
Lalb_Chr05g0222211 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 2569.7 1478 87.4
Lalb_Chr09g0330891 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 2560.8 1487 87.0
QL03p035815 Quercus lobata HOM05D001486 ORTHO05D004921 0.0e+00 2436.4 1491 82.6
Thecc.02G292500 Theobroma cacao HOM05D001486 ORTHO05D004921 0.0e+00 2369.0 1499 79.9
Prupe.1G333300 Prunus persica HOM05D001486 ORTHO05D004921 0.0e+00 2358.2 1493 79.8
Atru.chr11.925 Acer truncatum HOM05D001486 ORTHO05D004921 0.0e+00 2352.0 1499 79.6
Gohir.D02G139700 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 2349.7 1499 79.0
Gorai.005G157100 Gossypium raimondii HOM05D001486 ORTHO05D004921 0.0e+00 2348.5 1498 79.0
Duzib268G0355 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 2332.4 1499 79.1
TWI74G0959 Tripterygium wilfordii HOM05D001486 ORTHO05D004921 0.0e+00 2326.6 1501 78.2
COL.COLO4_16588 Corchorus olitorius HOM05D001486 ORTHO05D004921 0.0e+00 2322.4 1498 78.7
Manes.17G083900 Manihot esculenta HOM05D001486 ORTHO05D004921 0.0e+00 2320.0 1503 78.1
Ciclev10014036m.g Citrus clementina HOM05D001486 ORTHO05D004921 0.0e+00 2317.3 1499 78.1
Lj3A864G85 Lonicera japonica HOM05D001486 ORTHO05D004921 0.0e+00 2303.9 1501 78.1
CSS0037038 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 0.0e+00 2302.7 1495 78.6
CANSAT01G0610 Cannabis sativa HOM05D001486 ORTHO05D004921 0.0e+00 2297.3 1490 77.9
Potri.008G134800 Populus trichocarpa HOM05D001486 ORTHO05D004921 0.0e+00 2293.8 1498 76.8
Actinidia36627 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2293.1 1499 78.1
Duzib251G0538 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 2290.0 1499 77.3
RcHm_v2.0_Chr4g0443061 Rosa chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2287.7 1492 77.4
FvH4_4g33560 Fragaria vesca HOM05D001486 ORTHO05D004921 0.0e+00 2285.4 1493 76.9
FAN22G2372 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2284.6 1493 77.0
FAN12G0503 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2276.5 1493 76.8
MD13G1020400 Malus domestica HOM05D001486 ORTHO05D004921 0.0e+00 2275.0 1490 77.9
Eucgr.G02106 Eucalyptus grandis HOM05D001486 ORTHO05D004921 0.0e+00 2266.9 1498 76.4
FAN17G1739 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2265.3 1494 76.2
FAN07G1595 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2264.6 1486 76.7
PGR142G2431 Punica granatum HOM05D001486 ORTHO05D004921 0.0e+00 2260.3 1499 76.8
Actinidia12394 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2259.6 1482 77.9
Sabra08G0102800 Salix brachista HOM05D001486 ORTHO05D004921 0.0e+00 2241.8 1532 74.5
vmacro10693 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 0.0e+00 2232.2 1556 74.2
Migut.E00481 Erythranthe guttata HOM05D001486 ORTHO05D004921 0.0e+00 2231.4 1497 75.6
MSTRG.2128 Avicennia marina HOM05D001486 ORTHO05D004921 0.0e+00 2218.7 1500 74.3
Sed0010499 Sechium edule HOM05D001486 ORTHO05D004921 0.0e+00 2218.7 1491 74.8
SalBow2G2685 Salvia bowleyana HOM05D001486 ORTHO05D004921 0.0e+00 2212.2 1537 73.6
SGA_v2.0_scaffold23G10214 Striga asiatica HOM05D001486 ORTHO05D004921 0.0e+00 2197.9 1497 74.5
ClCG07G005610 Citrullus lanatus HOM05D001486 ORTHO05D004921 0.0e+00 2182.5 1482 74.4
Aqoxy3G03310 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 2179.8 1482 74.4
MELO3C026441.2 Cucumis melo HOM05D001486 ORTHO05D004921 0.0e+00 2177.9 1492 73.7
Nn4g24372 Nelumbo nucifera HOM05D001486 ORTHO05D004921 0.0e+00 2175.6 1452 76.8
CsaV3_5G015740 Cucumis sativus L. HOM05D001486 ORTHO05D004921 0.0e+00 2169.8 1493 73.5
Rhsim09G0089500 Rhododendron simsii HOM05D001486 ORTHO05D004921 0.0e+00 2169.0 1571 72.1
EL10Ac3g06288 Beta vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 2165.2 1497 73.3
DCAR_007329 Daucus carota HOM05D001486 ORTHO05D004921 0.0e+00 2162.5 1494 72.7
THA.LOC104823681 Tarenaya hassleriana HOM05D001486 ORTHO05D004921 0.0e+00 2161.0 1486 73.6
Cpa.g.sc2.194 Carica papaya HOM05D001486 ORTHO05D004921 0.0e+00 2157.9 1498 74.3
Cc04_g10510 Coffea canephora HOM05D001486 ORTHO05D004921 0.0e+00 2157.1 1499 73.9
CAN.G149.16 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 2154.8 1497 73.1
Sopen07g004030 Solanum pennellii HOM05D001486 ORTHO05D004921 0.0e+00 2149.8 1496 73.2
Aqoxy7G03241 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 2149.0 1482 73.3
Solyc07g008160.3 Solanum lycopersicum HOM05D001486 ORTHO05D004921 0.0e+00 2148.2 1496 73.1
Thhalv10006562m.g Eutrema salsugineum HOM05D001486 ORTHO05D004921 0.0e+00 2114.7 1486 73.0
Ah.13g072990 Amaranthus hybridus HOM05D001486 ORTHO05D004921 0.0e+00 2111.3 1502 71.8
CARHR015390 Cardamine hirsuta HOM05D001486 ORTHO05D004921 0.0e+00 2105.1 1490 72.1
AL1G26870 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 0.0e+00 2103.9 1491 72.6
AT1G14850 Arabidopsis thaliana HOM05D001486 ORTHO05D004921 0.0e+00 2103.9 1490 72.3
Hund13366 Selenicereus undatus HOM05D001486 ORTHO05D004921 0.0e+00 2102.4 1552 69.9
Carub.0001s1464 Capsella rubella HOM05D001486 ORTHO05D004921 0.0e+00 2102.0 1488 72.0
HanXRQChr08g0212501 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 2101.2 1492 71.8
Oeu064208.1 Olea europaea HOM05D001486 ORTHO05D004921 0.0e+00 2098.2 1499 71.8
ECA233G0786 Erigeron canadensis HOM05D001486 ORTHO05D004921 0.0e+00 2097.8 1484 72.2
BcaB02g06554 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2086.6 1485 71.9
Sp1g13290 Schrenkiella parvula HOM05D001486 ORTHO05D004921 0.0e+00 2082.0 1486 71.7
BcaC05g25406 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2079.3 1485 71.9
C05p12830 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2078.9 1495 71.7
AUR62002589 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 2073.1 1482 71.1
BolC5t30028H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 2071.2 1495 71.4
BcaC07g41534 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2068.5 1485 71.3
BolC8t52091H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 2063.9 1493 71.1
C08p45360 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2058.9 1496 71.0
BcaB08g34420 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2058.1 1483 71.1
BraA06t24267Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 2057.0 1495 71.0
BraA09t41545Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 2055.4 1498 71.0
A09p61750 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2054.6 1494 71.1
Lsat_1_v5_gn_8_46521 Lactuca sativa HOM05D001486 ORTHO05D004921 0.0e+00 2045.0 1474 71.2
Sc11g0004180 Simmondsia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2044.6 1498 70.0
CiPaw.06G051900 Carya illinoinensis HOM05D001486 ORTHO05D004921 0.0e+00 2043.1 1303 80.3
Haze_10881 Corylus avellana HOM05D001486 ORTHO05D004921 0.0e+00 2041.9 1588 69.3
AUR62030013 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 2020.7 1576 67.1
PSO782G0822 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 2020.0 1492 68.9
Dinv10475 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 2016.9 1307 79.0
PSO063G3102 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 2015.7 1494 68.6
Aa31LG1G260 Aethionema arabicum HOM05D001486 ORTHO05D004921 0.0e+00 2013.0 1459 70.7
Gohir.A03G115400 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 1989.2 1310 77.6
Dinv07730 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 1976.8 1277 78.7
ATR0753G157 Amborella trichopoda HOM05D001486 ORTHO05D004921 0.0e+00 1929.5 1502 67.5
HPP92_002282 Vanilla planifolia HOM05D001486 ORTHO05D004921 0.0e+00 1877.8 1480 65.2
Hma1.2p1_0705F.1_g206910 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1867.8 1223 77.7
Hma1.2p1_0277F.1_g111740 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1860.9 1393 71.4
Os06g0305200 Oryza sativa ssp. japonica HOM05D001486 ORTHO05D004921 0.0e+00 1854.0 1487 64.0
CAN.G601.2 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 1834.7 1303 72.7
A06p10890 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1827.8 1365 69.8
HanXRQChr12g0363231 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 1771.5 1424 65.8
Peaxi162Scf00376g00816 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1764.2 1444 65.0
Zm00001eb009110 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1753.4 1437 62.4
Lj1g0014898 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 1699.1 1082 82.0
Mapoly0035s0137 Marchantia polymorpha HOM05D001486 ORTHO05D004921 0.0e+00 1634.0 1519 57.2
Pp3c8_3720 Physcomitrium patens HOM05D001486 ORTHO05D004921 0.0e+00 1625.1 1524 56.8
TAR629G0611 Trochodendron aralioides HOM05D001486 ORTHO05D004921 0.0e+00 1616.7 988 81.4
Peaxi162Scf01391g00116 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1459.1 1416 57.6
Zm00001eb399840 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1402.1 1217 60.3
AagrBONN_evm.TU.Sc2ySwM_362.1455 Anthoceros agrestis HOM05D001486 ORTHO05D004921 0.0e+00 1359.0 1294 55.8
Nitab4.5_0004576g0040 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1338.6 1392 55.0
Nitab4.5_0010421g0010 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1296.2 1375 53.6
MD16G1018500 Malus domestica HOM05D001486 ORTHO05D004921 0.0e+00 1118.6 745 75.4
Peaxi162Scf01152g00010 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1083.9 1282 51.2
GSVIVG01011662001 Vitis vinifera HOM05D001486 ORTHO05D004921 0.0e+00 1078.9 740 76.8
SEGI_07920 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 1.7e-304 1050.0 848 63.7
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 6.4e-256 888.6 778 61.3
Peaxi162Scf01152g00113 Petunia axillaris HOM05D001486 ORTHO05D004921 5.4e-247 859.0 924 54.4
unitig_27.g25159 Utricularia gibba HOM05D001486 ORTHO05D004921 1.1e-244 851.3 711 63.4
CDE06G1861 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 5.8e-233 812.4 579 68.4
unitig_27.g25160 Utricularia gibba HOM05D001486 ORTHO05D004921 1.6e-214 751.1 609 64.0
Carub.0127s0003 Capsella rubella HOM05D001486 ORTHO05D004921 1.8e-194 684.5 893 46.0
CDE06G1153 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 1.3e-192 678.3 599 61.1
GSVIVG01011661001 Vitis vinifera HOM05D001486 ORTHO05D004921 6.5e-184 649.4 361 84.2
ECA247G0951 Erigeron canadensis HOM05D001486 ORTHO05D004921 3.6e-174 617.1 742 48.1
MD16G1018600 Malus domestica HOM05D001486 ORTHO05D004921 2.2e-163 581.3 477 66.7
TAR629G0795 Trochodendron aralioides HOM05D001486 ORTHO05D004921 1.2e-161 575.5 441 72.1
AL1G32070 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 5.8e-156 556.6 469 62.3
RcHm_v2.0_Chr2g0167011 Rosa chinensis HOM05D001486 ORTHO05D004921 1.3e-144 518.8 579 53.4
CDE07G1854 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 3.3e-119 434.5 771 38.7
MCO15G435 Micromonas commoda HOM05D001486 ORTHO05D004921 2.4e-101 375.2 1828 25.9
Cre09.g394350 Chlamydomonas reinhardtii HOM05D001486 ORTHO05D004921 2.6e-92 345.1 1605 25.6
PRCOL_00002396 Prasinoderma coloniale HOM05D001486 ORTHO05D004921 2.2e-91 342.0 1567 26.4
CDE07G0203 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 1.1e-90 339.7 445 43.6
MD16G1018800 Malus domestica HOM05D001486 ORTHO05D004921 3.7e-86 324.7 219 77.2
SEGI_12334 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 9.1e-85 320.1 396 48.5
SEGI_06977 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 1.0e-75 290.0 225 66.7
vmacro04889 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 2.3e-72 278.9 238 63.9
FvH4_1g18130 Fragaria vesca HOM05D001486 ORTHO05D004921 2.0e-71 275.8 155 79.4
AL1G32080 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 1.3e-70 273.1 231 62.8
CAN.G601.1 Capsicum annuum HOM05D001486 ORTHO05D004921 8.2e-70 270.4 152 82.2
vmacro09906 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 4.7e-65 254.6 275 53.5
Zm00001eb255180 Zea mays HOM05D001486 ORTHO05D004921 4.0e-64 251.5 196 65.3
Cfa024881 Carpinus fangiana HOM05D005623 ORTHO05D007130 4.4e-47 194.9 1325 24.5
SGA_v2.0_scaffold23G10209 Striga asiatica HOM05D001486 ORTHO05D004921 5.8e-47 194.5 102 89.2
Pp3c3_36410 Physcomitrium patens HOM05D001486 ORTHO05D004921 6.4e-46 191.0 188 54.8
CARHR227050 Cardamine hirsuta HOM05D001486 ORTHO05D004921 3.2e-37 162.2 163 52.1
CSS0012816 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 7.0e-37 161.0 190 53.2
RcHm_v2.0_Chr2g0167021 Rosa chinensis HOM05D001486 ORTHO05D004921 4.6e-36 158.3 217 47.9
Zm00001eb235300 Zea mays HOM05D001486 ORTHO05D004921 8.6e-35 154.1 130 60.0
AL2G18360 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 6.2e-33 147.9 344 33.1
Zm00001eb201400 Zea mays HOM05D001486 ORTHO05D004921 4.1e-29 135.2 110 65.5
BcaC09g49263 Brassica carinata HOM05D001486 ORTHO05D012131 5.1e-27 128.3 109 61.5
BcaC01g04114 Brassica carinata HOM05D001486 ORTHO05D012131 5.6e-26 124.8 96 65.6
Rhsim12G0118300 Rhododendron simsii HOM05D001486 ORTHO05D004921 1.1e-24 120.6 102 65.7
ClCG01G015310 Citrullus lanatus HOM05D001486 ORTHO05D004921 1.8e-24 119.8 56 92.9
SEGI_12550 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 3.1e-24 119.0 65 81.5
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 8.4e-22 110.9 67 77.6
AL3G34910 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 4.7e-17 95.1 134 44.8
GSVIVG01026805001 Vitis vinifera HOM05D001486 ORTHO05D004921 2.4e-16 92.8 73 61.6
Hma1.2p1_0277F.1_g111730 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 4.4e-15 88.6 53 81.1
Hma1.2p1_0705F.1_g206905 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 4.4e-15 88.6 53 81.1
GSVIVG01001572001 Vitis vinifera HOM05D001486 ORTHO05D004921 1.7e-14 86.7 110 49.1
FvH4_4g10520 Fragaria vesca HOM05D002057 ORTHO05D004921 3.6e-09 68.9 34 88.2
Zm00001eb334690 Zea mays HOM05D001486 ORTHO05D037216 3.6e-09 68.9 54 64.8
CSS0014875 Camellia sinensis var. sinensis HOM05D014252 ORTHO05D004921 7.6e-07 61.2 40 77.5
SMO306G0002 Selaginella moellendorffii HOM05D065592 ORTHO05D004921 7.6e-07 61.2 149 28.9
SEGI_21189 Sequoiadendron giganteum HOM05D001486 ORTHO05D037216 2.2e-06 59.7 53 60.4
SMO270G0006 Selaginella moellendorffii HOM05D065592 ORTHO05D004921 2.9e-06 59.3 149 28.9


User provided reference genes

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