Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G012600 Phaseolus vulgaris HOM05D001054 ORTHO05D007110 0.0e+00 1095.1 530 100.0
VMungo1215G2035 Vigna mungo HOM05D001054 ORTHO05D007110 2.8e-307 1057.7 530 97.2
Glyma.11G049900 Glycine max HOM05D001054 ORTHO05D007110 3.0e-288 994.6 541 89.6
Glyma.01G192200 Glycine max HOM05D001054 ORTHO05D007110 3.9e-280 967.6 538 88.1
Lj2g0007837 Lotus japonicus HOM05D001054 ORTHO05D007110 1.1e-271 939.5 535 83.9
Medtr5g016070 Medicago truncatula HOM05D001054 ORTHO05D007110 6.4e-267 923.7 530 82.8
Psat2g170280 Pisum sativum HOM05D001054 ORTHO05D007110 1.0e-264 916.4 537 81.4
TPR.G20955 Trifolium pratense HOM05D001054 ORTHO05D007110 3.9e-264 914.4 540 81.3
Ca_24720_v3 Cicer arietinum L. HOM05D001054 ORTHO05D007110 2.6e-260 901.7 535 80.4
Sed0014779 Sechium edule HOM05D001054 ORTHO05D007110 3.9e-256 887.9 535 80.0
Lalb_Chr05g0213551 Lupinus albus HOM05D001054 ORTHO05D007110 1.9e-255 885.6 534 81.5
CsaV3_6G043910 Cucumis sativus L. HOM05D001054 ORTHO05D007110 1.3e-254 882.9 535 79.8
Cpa.g.sc6.46 Carica papaya HOM05D001054 ORTHO05D007110 1.6e-254 882.5 539 79.4
arahy.Tifrunner.gnm1.ann1.5YK3TE Arachis hypogaea HOM05D001054 ORTHO05D007110 6.2e-254 880.6 537 79.9
CANSAT01G2549 Cannabis sativa HOM05D001054 ORTHO05D007110 3.1e-253 878.2 539 79.0
Eucgr.C03692 Eucalyptus grandis HOM05D001054 ORTHO05D007110 4.0e-253 877.9 548 78.3
Gorai.008G080600 Gossypium raimondii HOM05D001054 ORTHO05D007110 6.9e-253 877.1 531 80.6
TWI09G0178 Tripterygium wilfordii HOM05D001054 ORTHO05D007110 6.9e-253 877.1 538 78.4
FvH4_1g17270 Fragaria vesca HOM05D001054 ORTHO05D007110 3.4e-252 874.8 535 79.3
Sed0024674 Sechium edule HOM05D001054 ORTHO05D007110 4.4e-252 874.4 535 79.6
Cfa004102 Carpinus fangiana HOM05D001054 ORTHO05D007110 1.3e-251 872.8 534 78.8
Lalb_Chr09g0323511 Lupinus albus HOM05D001054 ORTHO05D007110 1.7e-251 872.5 545 78.9
PGR004G0129 Punica granatum HOM05D001054 ORTHO05D007110 1.7e-251 872.5 536 78.9
Eucgr.C03920 Eucalyptus grandis HOM05D001054 ORTHO05D007110 2.2e-251 872.1 544 77.4
Gohir.D12G073300 Gossypium hirsutum HOM05D001054 ORTHO05D007110 2.2e-251 872.1 531 80.0
ClCG01G017380 Citrullus lanatus HOM05D001054 ORTHO05D007110 3.8e-251 871.3 537 79.9
Nn7g37208 Nelumbo nucifera HOM05D001054 ORTHO05D007110 3.8e-251 871.3 539 78.8
TAR625G0225 Trochodendron aralioides HOM05D001054 ORTHO05D007110 3.8e-251 871.3 538 78.1
COL.COLO4_11542 Corchorus olitorius HOM05D001054 ORTHO05D007110 4.9e-251 870.9 531 78.9
Thecc.01G069100 Theobroma cacao HOM05D001054 ORTHO05D007110 8.4e-251 870.2 531 79.7
FAN19G1445 Fragaria x ananassa HOM05D001054 ORTHO05D007110 4.2e-250 867.8 544 77.9
Prupe.6G223800 Prunus persica HOM05D001054 ORTHO05D007110 9.3e-250 866.7 536 77.4
CiPaw.01G007000 Carya illinoinensis HOM05D001054 ORTHO05D007110 1.6e-249 865.9 531 78.9
MELO3C007616.2 Cucumis melo HOM05D001054 ORTHO05D007110 1.6e-249 865.9 561 76.3
MSTRG.23690 Avicennia marina HOM05D001054 ORTHO05D007110 1.1e-247 859.8 530 78.9
FAN23G1327 Fragaria x ananassa HOM05D001054 ORTHO05D007110 1.1e-247 859.8 557 75.9
Manes.13G113500 Manihot esculenta HOM05D001054 ORTHO05D007110 4.3e-247 857.8 530 77.9
FAN26G1436 Fragaria x ananassa HOM05D001054 ORTHO05D007110 7.4e-247 857.1 570 74.4
Ciclev10025341m.g Citrus clementina HOM05D001054 ORTHO05D007110 1.6e-246 855.9 533 77.7
Atru.chr3.194 Acer truncatum HOM05D001054 ORTHO05D007110 2.8e-246 855.1 539 77.6
Potri.007G053000 Populus trichocarpa HOM05D001054 ORTHO05D007110 4.8e-246 854.4 531 76.3
TAR628G0943 Trochodendron aralioides HOM05D001054 ORTHO05D007110 8.1e-246 853.6 538 76.8
arahy.Tifrunner.gnm1.ann1.SB8Z2H Arachis hypogaea HOM05D001054 ORTHO05D007110 1.8e-245 852.4 560 75.5
PGSC0003DMG400023692 Solanum tuberosum HOM05D001054 ORTHO05D007110 6.9e-245 850.5 530 77.5
Duzib264G0621 Durio zibethinus HOM05D001054 ORTHO05D007110 2.0e-244 849.0 531 78.3
Atru.chr3.165 Acer truncatum HOM05D001054 ORTHO05D007110 3.4e-244 848.2 542 76.8
Hma1.2p1_0017F.1_g012090 Hydrangea macrophylla HOM05D001054 ORTHO05D007110 5.8e-244 847.4 533 77.1
Lj7C88G8 Lonicera japonica HOM05D001054 ORTHO05D007110 5.8e-244 847.4 533 77.3
PSO541G5579 Papaver somniferum HOM05D001054 ORTHO05D007110 1.3e-243 846.3 535 76.8
Solyc10g080040.3 Solanum lycopersicum HOM05D001054 ORTHO05D007110 1.7e-243 845.9 530 77.2
Cc07_g06840 Coffea canephora HOM05D001054 ORTHO05D007110 2.2e-243 845.5 518 78.2
Sopen10g030650 Solanum pennellii HOM05D001054 ORTHO05D007110 3.8e-243 844.7 530 77.0
PSO675G2247 Papaver somniferum HOM05D001054 ORTHO05D007110 6.4e-243 844.0 535 76.6
Haze_15309 Corylus avellana HOM05D001054 ORTHO05D007110 1.4e-242 842.8 554 74.9
Oeu013280.1 Olea europaea HOM05D001054 ORTHO05D007110 2.4e-242 842.0 530 77.4
Aa31LG6G14390 Aethionema arabicum HOM05D001054 ORTHO05D007110 3.2e-242 841.6 534 77.2
AT4G37510 Arabidopsis thaliana HOM05D001054 ORTHO05D007110 3.2e-242 841.6 514 78.8
Aqoxy2G00045 Aquilegia oxysepala HOM05D001054 ORTHO05D007110 4.2e-242 841.3 540 76.9
RcHm_v2.0_Chr2g0107461 Rosa chinensis HOM05D001054 ORTHO05D007110 4.2e-242 841.3 591 71.1
THA.LOC104807624 Tarenaya hassleriana HOM05D001054 ORTHO05D007110 1.2e-241 839.7 535 77.8
MBI19_g10811_MAGBIO Magnolia biondii HOM05D001054 ORTHO05D007110 1.6e-241 839.3 532 76.3
Sabra07G0046600 Salix brachista HOM05D001054 ORTHO05D007110 2.7e-241 838.6 531 75.7
AL7G13250 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 7.9e-241 837.0 530 77.0
Sc16g0004970 Simmondsia chinensis HOM05D001054 ORTHO05D007110 1.0e-240 836.6 537 75.8
SalBow6G1211 Salvia bowleyana HOM05D001054 ORTHO05D007110 1.3e-240 836.3 531 76.1
Carub.0007s0278 Capsella rubella HOM05D001054 ORTHO05D007110 1.8e-240 835.9 533 76.5
HanXRQChr14g0441861 Helianthus annuus HOM05D001054 ORTHO05D007110 2.3e-240 835.5 530 75.3
CARHR245910 Cardamine hirsuta HOM05D001054 ORTHO05D007110 3.0e-240 835.1 535 76.3
Migut.H00367 Erythranthe guttata HOM05D001054 ORTHO05D007110 3.0e-240 835.1 534 75.8
CDE04G1953 Ceratophyllum demersum HOM05D001054 ORTHO05D007110 3.9e-240 834.7 538 76.8
Peaxi162Scf00365g00936 Petunia axillaris HOM05D001054 ORTHO05D007110 8.7e-240 833.6 529 76.4
DCAR_010834 Daucus carota HOM05D001054 ORTHO05D007110 1.1e-239 833.2 550 74.0
Thhalv10024858m.g Eutrema salsugineum HOM05D001054 ORTHO05D007110 4.3e-239 831.2 517 77.4
Nitab4.5_0002331g0050 Nicotiana tabacum HOM05D001054 ORTHO05D007110 2.1e-238 828.9 530 76.4
Nitab4.5_0006689g0010 Nicotiana tabacum HOM05D001054 ORTHO05D007110 2.1e-238 828.9 530 76.4
Sp7g35190 Schrenkiella parvula HOM05D001054 ORTHO05D007110 2.8e-238 828.6 517 77.0
arahy.Tifrunner.gnm1.ann1.S94KHE Arachis hypogaea HOM05D001054 ORTHO05D007110 1.8e-237 825.9 557 74.3
arahy.Tifrunner.gnm1.ann1.UKA06W Arachis hypogaea HOM05D001054 ORTHO05D007110 3.1e-237 825.1 542 75.8
Rhsim10G0102900 Rhododendron simsii HOM05D001054 ORTHO05D007110 5.3e-237 824.3 590 69.7
arahy.Tifrunner.gnm1.ann1.AR4BCX Arachis hypogaea HOM05D001054 ORTHO05D007110 9.0e-237 823.5 542 75.6
arahy.Tifrunner.gnm1.ann1.V4EKGG Arachis hypogaea HOM05D001054 ORTHO05D007110 1.2e-236 823.2 557 74.3
A01p01450 Brassica napus HOM05D001054 ORTHO05D007110 4.5e-236 821.2 534 75.1
BraA01t00139Z Brassica rapa HOM05D001054 ORTHO05D007110 5.8e-236 820.8 534 74.9
SGA_v2.0_scaffold72G24093 Striga asiatica HOM05D001054 ORTHO05D007110 1.0e-235 820.1 531 74.6
SGA_v2.0_scaffold15G07420 Striga asiatica HOM05D001054 ORTHO05D007110 1.3e-235 819.7 530 74.9
BolC1t00157H Brassica oleracea HOM05D001054 ORTHO05D007110 1.7e-235 819.3 529 75.0
BcaNung03665 Brassica carinata HOM05D001054 ORTHO05D007110 6.5e-235 817.4 530 74.7
C01p01620 Brassica napus HOM05D001054 ORTHO05D007110 6.5e-235 817.4 530 74.7
ATR1096G061 Amborella trichopoda HOM05D001054 ORTHO05D007110 1.9e-234 815.8 533 74.9
EL10Ac6g15648 Beta vulgaris HOM05D001054 ORTHO05D007110 7.1e-234 813.9 533 73.0
Lsat_1_v5_gn_2_83701 Lactuca sativa HOM05D001054 ORTHO05D007110 2.1e-233 812.4 539 73.3
DCAR_021470 Daucus carota HOM05D001054 ORTHO05D007110 1.5e-231 806.2 523 75.0
AUR62040267 Chenopodium quinoa HOM05D001054 ORTHO05D007110 3.3e-231 805.1 535 72.5
AUR62003982 Chenopodium quinoa HOM05D001054 ORTHO05D007110 1.3e-230 803.1 535 72.3
Lj4g0019986 Lotus japonicus HOM05D001054 ORTHO05D007110 1.8e-229 799.3 531 71.8
unitig_0.g506 Utricularia gibba HOM05D001054 ORTHO05D007110 3.1e-229 798.5 469 81.2
BcaNung05084 Brassica carinata HOM05D001054 ORTHO05D007110 9.0e-229 797.0 537 73.0
VMungo0251G1033 Vigna mungo HOM05D001054 ORTHO05D007110 1.5e-228 796.2 531 72.7
Hund13932 Selenicereus undatus HOM05D001054 ORTHO05D007110 7.6e-228 793.9 534 71.2
Phvul.003G236900 Phaseolus vulgaris HOM05D001054 ORTHO05D007110 1.9e-226 789.3 529 72.4
Os01g0810100 Oryza sativa ssp. japonica HOM05D001054 ORTHO05D007110 3.7e-222 775.0 482 76.3
HPP92_018502 Vanilla planifolia HOM05D001054 ORTHO05D007110 1.8e-221 772.7 539 70.5
CSS0030463 Camellia sinensis var. sinensis HOM05D001054 ORTHO05D007110 1.3e-219 766.5 537 70.9
TPR.G23864 Trifolium pratense HOM05D001054 ORTHO05D007110 4.2e-218 761.5 534 69.1
Medtr4g095410 Medicago truncatula HOM05D001054 ORTHO05D007110 1.8e-213 746.1 525 69.5
HPP92_017544 Vanilla planifolia HOM05D001054 ORTHO05D007110 1.0e-208 730.3 471 72.6
ECA238G1085 Erigeron canadensis HOM05D001054 ORTHO05D007110 2.4e-197 692.6 398 79.4
Zm00001eb150280 Zea mays HOM05D001054 ORTHO05D007110 1.0e-195 687.2 459 72.5
Ah.02g125600 Amaranthus hybridus HOM05D001054 ORTHO05D007110 3.8e-195 685.3 426 74.2
Gohir.A12G075200 Gossypium hirsutum HOM05D001054 ORTHO05D007110 2.5e-194 682.6 428 78.0
Psat4g083600 Pisum sativum HOM05D001054 ORTHO05D007110 2.2e-187 659.4 397 76.6
Dinv26904 Davidia involucrata HOM05D001054 ORTHO05D007110 2.5e-178 629.4 408 76.7
Actinidia36442 Actinidia chinensis HOM05D001054 ORTHO05D007110 1.4e-176 623.6 510 62.9
CSS0024742 Camellia sinensis var. sinensis HOM05D001054 ORTHO05D007110 1.1e-165 587.4 329 81.2
Mapoly0005s0153 Marchantia polymorpha HOM05D001054 ORTHO05D007110 3.1e-152 542.7 451 57.6
Pp3c5_10700 Physcomitrium patens HOM05D001054 ORTHO05D007110 2.3e-147 526.6 469 54.6
AL5G41245 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 8.6e-147 524.6 397 69.3
HPP92_017568 Vanilla planifolia HOM05D001054 ORTHO05D007110 2.1e-145 520.0 412 64.8
GSVIVG01000148001 Vitis vinifera HOM05D001054 ORTHO05D007110 8.4e-142 508.1 283 82.3
SEGI_29234 Sequoiadendron giganteum HOM05D001054 ORTHO05D007110 3.5e-132 476.1 366 63.7
SMO119G0428 Selaginella moellendorffii HOM05D001054 ORTHO05D007110 1.0e-131 474.6 453 52.8
vmacro05387 Vaccinium macrocarpon HOM05D001054 ORTHO05D007110 2.6e-127 459.9 346 64.7
AagrBONN_evm.TU.Sc2ySwM_368.879 Anthoceros agrestis HOM05D001054 ORTHO05D007110 9.9e-127 458.0 465 49.9
Glyma.05G104100 Glycine max HOM05D001054 ORTHO05D007110 1.8e-123 447.2 331 68.0
vmacro05388 Vaccinium macrocarpon HOM05D001054 ORTHO05D007110 6.7e-99 365.5 270 70.0
FAN28G0670 Fragaria x ananassa HOM05D001054 ORTHO05D007110 1.0e-91 341.7 230 78.3
MD15G1293700 Malus domestica HOM05D001054 ORTHO05D007110 5.2e-83 312.8 181 77.9
Duzib147G0207 Durio zibethinus HOM05D001054 ORTHO05D007110 2.4e-80 303.9 181 78.5
AL7G13080 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 7.0e-72 275.8 171 73.7
SEGI_10508 Sequoiadendron giganteum HOM05D001054 ORTHO05D007110 3.0e-54 217.2 134 70.9
Actinidia11996 Actinidia chinensis HOM05D001054 ORTHO05D007110 3.4e-42 177.2 114 72.8
Eucgr.C03694 Eucalyptus grandis HOM05D001054 ORTHO05D026867 5.1e-38 163.3 104 71.2
Actinidia11995 Actinidia chinensis HOM05D001054 ORTHO05D038022 5.6e-29 133.3 81 75.3
Oeu038701.1 Olea europaea HOM05D001054 ORTHO05D038022 2.9e-25 120.9 68 82.4
C07p62420 Brassica napus HOM05D001054 ORTHO05D007110 2.0e-18 98.2 53 79.2
AT2G48121 Arabidopsis thaliana HOM05D001054 ORTHO05D026867 3.8e-17 94.0 56 76.8
BcaNung02059 Brassica carinata HOM05D001054 ORTHO05D007110 1.9e-16 91.7 50 78.0
A03p65210 Brassica napus HOM05D001054 ORTHO05D026867 1.9e-16 91.7 66 65.2
BraA03t15579Z Brassica rapa HOM05D001054 ORTHO05D026867 1.9e-16 91.7 66 65.2
Sed0007349 Sechium edule HOM05D001054 ORTHO05D007110 1.7e-09 68.6 62 61.3
CBR_g21303 Chara braunii HOM05D001677 ORTHO05D000002 3.9e-06 57.4 183 26.8


User provided reference genes

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