Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.001G110400 Phaseolus vulgaris HOM05D004151 ORTHO05D004775 6.2e-69 264.6 203 100.0
TPR.G5895 Trifolium pratense HOM05D004151 ORTHO05D004775 3.8e-58 228.8 154 89.0
VMungo1383G2477 Vigna mungo HOM05D004151 ORTHO05D004775 4.2e-57 225.3 154 89.6
Lj1g0021266 Lotus japonicus HOM05D004151 ORTHO05D004775 1.2e-56 223.8 155 89.7
Lalb_Chr22g0359191 Lupinus albus HOM05D004151 ORTHO05D004775 1.2e-56 223.8 168 85.1
Lalb_Chr14g0364491 Lupinus albus HOM05D004151 ORTHO05D004775 1.6e-56 223.4 168 82.7
Psat0s1971g0280 Pisum sativum HOM05D004151 ORTHO05D004775 1.6e-56 223.4 153 89.5
Glyma.19G110900 Glycine max HOM05D004151 ORTHO05D004775 2.7e-56 222.6 163 86.5
Glyma.16G041400 Glycine max HOM05D004151 ORTHO05D004775 7.8e-56 221.1 155 80.0
Medtr7g085640 Medicago truncatula HOM05D004151 ORTHO05D004775 7.8e-56 221.1 155 90.3
arahy.Tifrunner.gnm1.ann1.JDMG7B Arachis hypogaea HOM05D004151 ORTHO05D004775 1.3e-55 220.3 152 88.8
arahy.Tifrunner.gnm1.ann1.PLSY77 Arachis hypogaea HOM05D004151 ORTHO05D004775 1.3e-55 220.3 152 88.8
Haze_19418 Corylus avellana HOM05D004151 ORTHO05D004775 7.3e-54 214.5 159 81.1
Haze_19447 Corylus avellana HOM05D004151 ORTHO05D004775 7.3e-54 214.5 159 81.1
Cfa016441 Carpinus fangiana HOM05D004151 ORTHO05D004775 1.3e-53 213.8 167 77.8
CiPaw.09G001900 Carya illinoinensis HOM05D004151 ORTHO05D004775 3.1e-52 209.1 155 83.2
Atru.chr5.2062 Acer truncatum HOM05D004151 ORTHO05D004775 4.0e-52 208.8 154 76.6
TAR369G0512 Trochodendron aralioides HOM05D004151 ORTHO05D004775 4.0e-52 208.8 154 83.1
Aqoxy1G00486 Aquilegia oxysepala HOM05D004151 ORTHO05D004775 5.3e-52 208.4 153 79.7
CsaV3_4G013280 Cucumis sativus L. HOM05D004151 ORTHO05D004775 5.3e-52 208.4 154 77.3
SGA_v2.0_scaffold274G46513 Striga asiatica HOM05D004151 ORTHO05D004775 6.9e-52 208.0 160 83.8
Sabra13G0051900 Salix brachista HOM05D004151 ORTHO05D004775 9.0e-52 207.6 166 78.9
ClCG04G005310 Citrullus lanatus HOM05D004151 ORTHO05D004775 1.2e-51 207.2 154 83.8
Sed0025621 Sechium edule HOM05D004151 ORTHO05D004775 1.2e-51 207.2 168 75.0
MSTRG.19934 Avicennia marina HOM05D004151 ORTHO05D004775 1.5e-51 206.8 154 76.6
GSVIVG01033401001 Vitis vinifera HOM05D004151 ORTHO05D004775 1.5e-51 206.8 157 73.9
Migut.J01888 Erythranthe guttata HOM05D004151 ORTHO05D004775 2.6e-51 206.1 154 80.5
Aa31LG11G11430 Aethionema arabicum HOM05D004151 ORTHO05D004775 4.4e-51 205.3 177 80.2
Atru.chr5.2060 Acer truncatum HOM05D004151 ORTHO05D004775 5.8e-51 204.9 154 76.0
Nitab4.5_0009048g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 5.8e-51 204.9 154 76.6
Os11g0579800 Oryza sativa ssp. japonica HOM05D004151 ORTHO05D004775 5.8e-51 204.9 151 83.4
Ah.13g075350 Amaranthus hybridus HOM05D004151 ORTHO05D004775 7.6e-51 204.5 158 79.7
Ah.06g191800 Amaranthus hybridus HOM05D004151 ORTHO05D004775 9.9e-51 204.1 158 76.6
Manes.08G144000 Manihot esculenta HOM05D004151 ORTHO05D004775 1.3e-50 203.8 155 79.4
Nitab4.5_0007542g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 1.3e-50 203.8 156 73.7
Solyc10g078540.3 Solanum lycopersicum HOM05D004151 ORTHO05D004775 1.3e-50 203.8 154 76.6
Sopen10g029190 Solanum pennellii HOM05D004151 ORTHO05D004775 1.3e-50 203.8 154 76.6
PGSC0003DMG400008366 Solanum tuberosum HOM05D004151 ORTHO05D004775 1.3e-50 203.8 154 76.6
Cc06_g22960 Coffea canephora HOM05D004151 ORTHO05D004775 1.7e-50 203.4 156 77.6
Nn7g35851 Nelumbo nucifera HOM05D004151 ORTHO05D004775 1.7e-50 203.4 151 80.8
Sp3g02890 Schrenkiella parvula HOM05D004151 ORTHO05D004775 1.7e-50 203.4 153 80.4
TWI32G1207 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 1.7e-50 203.4 155 80.6
Aa31LG5G14500 Aethionema arabicum HOM05D004151 ORTHO05D004775 2.2e-50 203.0 122 86.9
MELO3C008801.2 Cucumis melo HOM05D004151 ORTHO05D004775 2.2e-50 203.0 154 81.8
Peaxi162Scf00003g04832 Petunia axillaris HOM05D004151 ORTHO05D004775 2.9e-50 202.6 154 70.8
CSS0045523 Camellia sinensis var. sinensis HOM05D004151 ORTHO05D004775 4.9e-50 201.8 151 85.4
CDE06G0359 Ceratophyllum demersum HOM05D004151 ORTHO05D004775 4.9e-50 201.8 154 75.3
Dinv37014 Davidia involucrata HOM05D004151 ORTHO05D004775 4.9e-50 201.8 154 77.3
Manes.09G141400 Manihot esculenta HOM05D004151 ORTHO05D004775 4.9e-50 201.8 155 77.4
Thecc.05G294500 Theobroma cacao HOM05D004151 ORTHO05D004775 8.4e-50 201.1 154 78.6
AT3G03920 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 1.1e-49 200.7 157 84.7
Potri.013G058400 Populus trichocarpa HOM05D004151 ORTHO05D004775 1.1e-49 200.7 158 79.7
PGR142G1491 Punica granatum HOM05D004151 ORTHO05D004775 1.1e-49 200.7 150 81.3
Dinv14579 Davidia involucrata HOM05D004151 ORTHO05D004775 1.4e-49 200.3 173 80.3
unitig_21.g20195 Utricularia gibba HOM05D004151 ORTHO05D004775 1.4e-49 200.3 154 76.6
Oeu059999.1 Olea europaea HOM05D004151 ORTHO05D004775 2.4e-49 199.5 156 73.7
Sp6g26140 Schrenkiella parvula HOM05D004151 ORTHO05D004775 2.4e-49 199.5 155 77.4
AL3G13810 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 3.2e-49 199.1 157 84.1
CANSAT78G0749 Cannabis sativa HOM05D004151 ORTHO05D004775 3.2e-49 199.1 156 84.0
THA.LOC104802867 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 3.2e-49 199.1 154 79.2
Thhalv10014755m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 4.2e-49 198.7 156 72.4
Thhalv10021561m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 4.2e-49 198.7 107 86.9
Gohir.A11G296500 Gossypium hirsutum HOM05D004151 ORTHO05D004775 4.2e-49 198.7 149 80.5
Gohir.D11G310400 Gossypium hirsutum HOM05D004151 ORTHO05D004775 4.2e-49 198.7 149 80.5
Gorai.007G343400 Gossypium raimondii HOM05D004151 ORTHO05D004775 4.2e-49 198.7 149 80.5
THA.LOC104827273 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 5.4e-49 198.4 155 78.7
Gohir.A08G213200 Gossypium hirsutum HOM05D004151 ORTHO05D004775 7.1e-49 198.0 149 80.5
Gorai.004G244500 Gossypium raimondii HOM05D004151 ORTHO05D004775 7.1e-49 198.0 149 80.5
Potri.019G034900 Populus trichocarpa HOM05D004151 ORTHO05D004775 7.1e-49 198.0 155 84.5
QL07p019530 Quercus lobata HOM05D004151 ORTHO05D004775 7.1e-49 198.0 156 76.9
RcHm_v2.0_Chr3g0490211 Rosa chinensis HOM05D004151 ORTHO05D004775 7.1e-49 198.0 159 77.4
BcaNung05745 Brassica carinata HOM05D004151 ORTHO05D004775 9.3e-49 197.6 121 83.5
FvH4_1g30320 Fragaria vesca HOM05D004151 ORTHO05D004775 9.3e-49 197.6 163 75.5
Hund24835 Selenicereus undatus HOM05D004151 ORTHO05D004775 9.3e-49 197.6 153 80.4
Duzib106G1401 Durio zibethinus HOM05D004151 ORTHO05D004775 1.2e-48 197.2 159 74.8
Zm00001eb200450 Zea mays HOM05D004151 ORTHO05D004775 1.2e-48 197.2 149 81.9
A03p08690 Brassica napus HOM05D004151 ORTHO05D004775 1.6e-48 196.8 155 78.1
CARHR194880 Cardamine hirsuta HOM05D004151 ORTHO05D004775 1.6e-48 196.8 170 74.7
MD05G1045500 Malus domestica HOM05D004151 ORTHO05D004775 1.6e-48 196.8 158 74.7
TWI34G0161 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 1.6e-48 196.8 164 78.7
HPP92_021240 Vanilla planifolia HOM05D004151 ORTHO05D004775 2.1e-48 196.4 155 77.4
FAN19G1796 Fragaria x ananassa HOM05D004151 ORTHO05D004775 2.7e-48 196.1 161 77.0
FAN26G2823 Fragaria x ananassa HOM05D004151 ORTHO05D004775 2.7e-48 196.1 161 77.0
Gohir.D08G230300 Gossypium hirsutum HOM05D004151 ORTHO05D004775 2.7e-48 196.1 149 79.9
Sed0023399 Sechium edule HOM05D004151 ORTHO05D004775 6.0e-48 194.9 153 80.4
Sc25g0004980 Simmondsia chinensis HOM05D004151 ORTHO05D004775 6.0e-48 194.9 154 70.1
BolC1t05799H Brassica oleracea HOM05D004151 ORTHO05D004775 7.9e-48 194.5 169 76.3
BraA01t04550Z Brassica rapa HOM05D004151 ORTHO05D004775 7.9e-48 194.5 159 73.0
EL10Ac3g06820 Beta vulgaris HOM05D004151 ORTHO05D004775 1.0e-47 194.1 148 83.1
COL.COLO4_13597 Corchorus olitorius HOM05D004151 ORTHO05D004775 1.0e-47 194.1 145 82.8
Hma1.2p1_0134F.1_g061640 Hydrangea macrophylla HOM05D004151 ORTHO05D004775 1.0e-47 194.1 161 77.0
BolC3t13499H Brassica oleracea HOM05D004151 ORTHO05D004775 1.3e-47 193.7 155 77.4
FAN23G0170 Fragaria x ananassa HOM05D004151 ORTHO05D004775 1.3e-47 193.7 161 76.4
CARHR078040 Cardamine hirsuta HOM05D004151 ORTHO05D004775 1.7e-47 193.4 155 69.0
Lsat_1_v5_gn_8_145841 Lactuca sativa HOM05D004151 ORTHO05D004775 1.7e-47 193.4 154 83.8
Lsat_1_v5_gn_8_24760 Lactuca sativa HOM05D004151 ORTHO05D004775 1.7e-47 193.4 157 79.6
FAN28G2413 Fragaria x ananassa HOM05D004151 ORTHO05D004775 2.3e-47 193.0 147 77.6
MD00G1189600 Malus domestica HOM05D004151 ORTHO05D004775 2.3e-47 193.0 158 70.9
AUR62032690 Chenopodium quinoa HOM05D004151 ORTHO05D004775 3.0e-47 192.6 145 84.1
HanXRQChr08g0216931 Helianthus annuus HOM05D004151 ORTHO05D004775 3.0e-47 192.6 158 80.4
Oeu049600.1 Olea europaea HOM05D004151 ORTHO05D004775 3.0e-47 192.6 153 77.8
SalBow5G4201 Salvia bowleyana HOM05D004151 ORTHO05D004775 3.0e-47 192.6 150 75.3
PSO063G0165 Papaver somniferum HOM05D004151 ORTHO05D004775 3.9e-47 192.2 162 72.2
PSO782G4796 Papaver somniferum HOM05D004151 ORTHO05D004775 3.9e-47 192.2 155 74.8
A01p41270 Brassica napus HOM05D004151 ORTHO05D004775 5.1e-47 191.8 159 72.3
BNapus_Darmor_BZH_scaffold_78p00440 Brassica napus HOM05D004151 ORTHO05D004775 5.1e-47 191.8 159 72.3
BcaNung05743 Brassica carinata HOM05D004151 ORTHO05D004775 6.6e-47 191.4 106 84.9
PSO384G0229 Papaver somniferum HOM05D004151 ORTHO05D004775 6.6e-47 191.4 154 79.9
BcaB01g05179 Brassica carinata HOM05D004151 ORTHO05D004775 1.1e-46 190.7 155 76.8
C03p10140 Brassica napus HOM05D004151 ORTHO05D004775 1.1e-46 190.7 155 76.8
BraA03t10192Z Brassica rapa HOM05D004151 ORTHO05D004775 1.1e-46 190.7 155 76.8
SEGI_32651 Sequoiadendron giganteum HOM05D004151 ORTHO05D004775 1.1e-46 190.7 154 74.0
BcaC03g13582 Brassica carinata HOM05D004151 ORTHO05D004775 1.5e-46 190.3 155 74.2
BolC2t06882H Brassica oleracea HOM05D004151 ORTHO05D004775 1.5e-46 190.3 155 74.2
Actinidia22083 Actinidia chinensis HOM05D004151 ORTHO05D004775 2.5e-46 189.5 147 81.0
Prupe.8G064800 Prunus persica HOM05D004151 ORTHO05D004775 2.5e-46 189.5 156 76.3
PSO339G5713 Papaver somniferum HOM05D004151 ORTHO05D004775 3.3e-46 189.1 149 79.9
Duzib177G0709 Durio zibethinus HOM05D004151 ORTHO05D004775 5.6e-46 188.3 154 75.3
vmacro09141 Vaccinium macrocarpon HOM05D004151 ORTHO05D004775 5.6e-46 188.3 158 79.1
CBR_g48747 Chara braunii HOM05D004151 ORTHO05D004775 7.3e-46 188.0 154 77.9
A02p04770 Brassica napus HOM05D004151 ORTHO05D004775 9.6e-46 187.6 155 74.2
Carub.0003s0316 Capsella rubella HOM05D004151 ORTHO05D004775 9.6e-46 187.6 156 73.1
Carub.0006s1646 Capsella rubella HOM05D004151 ORTHO05D004775 2.1e-45 186.4 155 76.8
AL6G29380 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 2.8e-45 186.0 154 69.5
C02p09730 Brassica napus HOM05D004151 ORTHO05D004775 2.8e-45 186.0 155 72.9
BraA02t05436Z Brassica rapa HOM05D004151 ORTHO05D004775 2.8e-45 186.0 161 72.0
Zm00001eb114360 Zea mays HOM05D004151 ORTHO05D004775 2.8e-45 186.0 190 66.8
HanXRQChr07g0204461 Helianthus annuus HOM05D004151 ORTHO05D004775 3.6e-45 185.7 152 76.3
Sabra19G0042500 Salix brachista HOM05D004151 ORTHO05D004775 3.6e-45 185.7 145 80.7
Sabra19G0044800 Salix brachista HOM05D004151 ORTHO05D004775 3.6e-45 185.7 145 80.7
Ca_08267_v3 Cicer arietinum L. HOM05D004151 ORTHO05D004775 6.2e-45 184.9 90 96.7
Mapoly0086s0024 Marchantia polymorpha HOM05D004151 ORTHO05D004775 8.1e-45 184.5 108 79.6
ATR0697G007 Amborella trichopoda HOM05D004151 ORTHO05D004775 1.1e-44 184.1 144 81.2
Pp3c25_15020 Physcomitrium patens HOM05D004151 ORTHO05D004775 1.4e-44 183.7 155 74.2
AT5G18180 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 2.4e-44 183.0 155 71.0
Peaxi162Scf00076g01048 Petunia axillaris HOM05D004151 ORTHO05D004775 3.1e-44 182.6 154 72.7
Pp3c5_28430 Physcomitrium patens HOM05D004151 ORTHO05D004775 3.1e-44 182.6 157 73.9
BcaB05g23300 Brassica carinata HOM05D004151 ORTHO05D004775 6.9e-44 181.4 155 72.9
ECA233G5487 Erigeron canadensis HOM05D004151 ORTHO05D004775 1.5e-43 180.3 160 71.2
Cpa.g.sc51.114 Carica papaya HOM05D004151 ORTHO05D004775 2.0e-43 179.9 91 91.2
AagrBONN_evm.TU.Sc2ySwM_362.2901 Anthoceros agrestis HOM05D004151 ORTHO05D004775 4.5e-43 178.7 154 72.1
CAN.G960.49 Capsicum annuum HOM05D004151 ORTHO05D004775 1.3e-42 177.2 93 89.2
Rhsim04G0087500 Rhododendron simsii HOM05D004151 ORTHO05D004775 4.2e-41 172.2 148 73.0
Hund19236 Selenicereus undatus HOM05D004151 ORTHO05D004775 3.5e-40 169.1 110 74.5
Cre13.g567850 Chlamydomonas reinhardtii HOM05D004151 ORTHO05D004775 4.6e-40 168.7 168 68.5
COL.COLO4_13598 Corchorus olitorius HOM05D004151 ORTHO05D004775 6.0e-40 168.3 150 72.7
Nitab4.5_0004844g0050 Nicotiana tabacum HOM05D004151 ORTHO05D004775 1.3e-39 167.2 89 86.5
Nitab4.5_0002769g0090 Nicotiana tabacum HOM05D004151 ORTHO05D004775 5.1e-39 165.2 154 68.2
MBI11_g31283_MAGBIO Magnolia biondii HOM05D004151 ORTHO05D004775 1.2e-35 154.1 99 82.8
MCO13G219 Micromonas commoda HOM05D004151 ORTHO05D004775 1.9e-33 146.7 107 63.6
SMO347G0554 Selaginella moellendorffii HOM05D004151 ORTHO05D004775 3.2e-33 146.0 173 62.4
BolC2t11912H Brassica oleracea HOM05D004151 ORTHO05D004775 4.6e-32 142.1 127 61.4
C09p58800 Brassica napus HOM05D004151 ORTHO05D004775 9.6e-30 134.4 77 80.5
BraA10t42874Z Brassica rapa HOM05D004151 ORTHO05D004775 2.6e-27 126.3 100 66.0
PRCOL_00005119 Prasinoderma coloniale HOM05D005848 ORTHO05D007532 6.5e-26 121.7 76 68.4
unitig_744.g24550 Utricularia gibba HOM05D004151 ORTHO05D004775 1.4e-25 120.6 60 91.7
Actinidia30553 Actinidia chinensis HOM05D004151 ORTHO05D004775 2.7e-24 116.3 58 94.8
C02p58510 Brassica napus HOM05D004151 ORTHO05D004775 2.5e-22 109.8 93 60.2
Haze_27090 Corylus avellana HOM05D000590 ORTHO05D004775 4.1e-20 102.4 114 46.5
HanXRQChr05g0143841 Helianthus annuus HOM05D004151 ORTHO05D004775 2.6e-19 99.8 107 50.5
Zm00001eb274230 Zea mays HOM05D004151 ORTHO05D004775 5.5e-17 92.0 49 79.6
Oeu035726.1 Olea europaea HOM05D004151 ORTHO05D004775 3.0e-15 86.3 106 47.2
Oeu035720.1 Olea europaea HOM05D004151 ORTHO05D004775 1.1e-14 84.3 106 46.2
BcaB08g36698 Brassica carinata HOM05D004151 ORTHO05D004775 1.1e-12 77.8 45 82.2
Atru.chr6.7 Acer truncatum HOM05D004151 ORTHO05D004775 1.4e-12 77.4 46 78.3
Atru.chr10.1764 Acer truncatum HOM05D004151 ORTHO05D004775 4.1e-12 75.9 46 78.3
Atru.chr5.2304 Acer truncatum HOM05D004151 ORTHO05D004775 4.1e-12 75.9 46 78.3
Atru.chr13.534 Acer truncatum HOM05D004151 ORTHO05D004775 3.4e-11 72.8 46 76.1
Atru.chr2.3197 Acer truncatum HOM05D004151 ORTHO05D004775 3.4e-11 72.8 46 76.1
Atru.chr4.2011 Acer truncatum HOM05D004151 ORTHO05D004775 3.4e-11 72.8 46 76.1
BolC9t58722H Brassica oleracea HOM05D004151 ORTHO05D004775 1.0e-10 71.2 39 84.6
ECA246G0128 Erigeron canadensis HOM05D001659 ORTHO05D001659 1.4e-07 60.8 35 77.1


User provided reference genes

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