Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Peaxi162Scf00411g00117 Petunia axillaris HOM05D006496 ORTHO05D008390 3.4e-105 385.2 220 100.0
CAN.G420.5 Capsicum annuum HOM05D006496 ORTHO05D008390 1.1e-74 283.9 191 74.3
Nitab4.5_0003498g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 1.8e-74 283.1 180 79.4
Nitab4.5_0009215g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 3.4e-73 278.9 233 65.7
Sopen11g030740 Solanum pennellii HOM05D006496 ORTHO05D008390 1.1e-71 273.9 189 73.0
Solyc11g073080.3 Solanum lycopersicum HOM05D006496 ORTHO05D008390 1.3e-69 266.9 190 72.1
Cc01_g12300 Coffea canephora HOM05D006496 ORTHO05D008390 1.2e-49 200.7 216 52.3
SalBow3G1961 Salvia bowleyana HOM05D006496 ORTHO05D008390 3.0e-45 186.0 189 52.9
Oeu058535.1 Olea europaea HOM05D006496 ORTHO05D008390 5.7e-44 181.8 189 49.7
PGSC0003DMG400015535 Solanum tuberosum HOM05D006496 ORTHO05D008390 2.4e-42 176.4 107 78.5
CSS0042381 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 2.7e-41 172.9 191 50.8
Lj2A1055T49 Lonicera japonica HOM05D006496 ORTHO05D008390 2.5e-39 166.4 166 56.6
Rhsim13G0086700 Rhododendron simsii HOM05D006496 ORTHO05D008390 3.6e-38 162.5 173 49.7
CSS0000664 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 6.1e-38 161.8 161 48.4
vmacro03111 Vaccinium macrocarpon HOM05D006496 ORTHO05D008390 1.4e-37 160.6 167 52.1
Actinidia07064 Actinidia chinensis HOM05D006496 ORTHO05D008390 1.3e-35 154.1 171 48.5
Actinidia37238 Actinidia chinensis HOM05D006496 ORTHO05D008390 2.8e-35 152.9 157 49.0
Lsat_1_v5_gn_5_167360 Lactuca sativa HOM05D006496 ORTHO05D008390 9.1e-34 147.9 250 37.6
HanXRQChr04g0106921 Helianthus annuus HOM05D006496 ORTHO05D008390 1.3e-32 144.1 211 39.8
Hma1.2p1_0035F.1_g022050 Hydrangea macrophylla HOM05D006496 ORTHO05D008390 1.7e-32 143.7 175 40.0
HanXRQChr01g0009851 Helianthus annuus HOM05D006496 ORTHO05D008390 2.5e-31 139.8 173 45.1
Migut.D02127 Erythranthe guttata HOM05D006496 ORTHO05D008390 2.8e-30 136.3 186 41.4
Lsat_1_v5_gn_9_22140 Lactuca sativa HOM05D006496 ORTHO05D008390 4.7e-30 135.6 190 39.5
ECA247G0375 Erigeron canadensis HOM05D006496 ORTHO05D008390 4.0e-29 132.5 240 37.5
HanXRQChr01g0009831 Helianthus annuus HOM05D006496 ORTHO05D008390 2.0e-28 130.2 215 36.7
MSTRG.21183 Avicennia marina HOM05D006496 ORTHO05D008390 3.7e-27 125.9 134 50.0
Ciclev10028859m.g Citrus clementina HOM05D006496 ORTHO05D008390 3.7e-27 125.9 152 42.8
SGA_v2.0_scaffold61G21263 Striga asiatica HOM05D006496 ORTHO05D008390 6.3e-27 125.2 164 43.3
MD03G1099500 Malus domestica HOM05D006496 ORTHO05D008390 7.0e-26 121.7 167 42.5
ECA248G1113 Erigeron canadensis HOM05D006496 ORTHO05D008390 9.2e-26 121.3 206 35.9
Prupe.6G084300 Prunus persica HOM05D006496 ORTHO05D008390 1.2e-25 120.9 153 43.1
AUR62001835 Chenopodium quinoa HOM05D006496 ORTHO05D008390 8.6e-24 114.8 171 40.4
Dinv06145 Davidia involucrata HOM05D006496 ORTHO05D008390 8.6e-24 114.8 123 47.2
AUR62009623 Chenopodium quinoa HOM05D006496 ORTHO05D008390 5.6e-23 112.1 161 41.0
Hund04996 Selenicereus undatus HOM05D006496 ORTHO05D008390 8.0e-22 108.2 161 42.2
COL.COLO4_18451 Corchorus olitorius HOM05D006496 ORTHO05D008390 1.8e-21 107.1 160 40.0
TWI75G0988 Tripterygium wilfordii HOM05D006496 ORTHO05D008390 1.8e-21 107.1 170 37.1
FAN11G0827 Fragaria x ananassa HOM05D006496 ORTHO05D008390 3.0e-21 106.3 171 39.2
FAN16G0777 Fragaria x ananassa HOM05D006496 ORTHO05D008390 5.2e-21 105.5 160 41.2
Atru.chr3.3823 Acer truncatum HOM05D006496 ORTHO05D008390 6.8e-21 105.1 174 37.9
Duzib168G2252 Durio zibethinus HOM05D006496 ORTHO05D008390 6.8e-21 105.1 163 38.0
FvH4_3g35010 Fragaria vesca HOM05D006496 ORTHO05D008390 6.8e-21 105.1 152 41.4
FAN25G3002 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.2e-20 104.4 150 42.0
Ah.08g218920 Amaranthus hybridus HOM05D006496 ORTHO05D008390 1.5e-20 104.0 155 40.0
FvH4_3g35002 Fragaria vesca HOM05D006496 ORTHO05D008390 1.5e-20 104.0 151 41.7
FAN11G2800 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.5e-20 104.0 151 41.7
AL8G36350 Arabidopsis lyrata HOM05D006496 ORTHO05D008390 2.6e-20 103.2 133 42.9
MD03G1099400 Malus domestica HOM05D006496 ORTHO05D008390 3.4e-20 102.8 163 39.3
AT5G59800 Arabidopsis thaliana HOM05D006496 ORTHO05D008390 4.4e-20 102.4 133 42.1
Prupe.6G084200 Prunus persica HOM05D006496 ORTHO05D008390 4.4e-20 102.4 151 39.7
FAN21G0875 Fragaria x ananassa HOM05D006496 ORTHO05D008390 5.7e-20 102.1 157 39.5
MD11G1113700 Malus domestica HOM05D006496 ORTHO05D008390 1.3e-19 100.9 167 37.1
CARHR273380 Cardamine hirsuta HOM05D006496 ORTHO05D008390 1.7e-19 100.5 133 40.6
Manes.04G031000 Manihot esculenta HOM05D006496 ORTHO05D008390 2.2e-19 100.1 187 36.4
Sp6g21470 Schrenkiella parvula HOM05D006496 ORTHO05D008390 2.9e-19 99.8 133 41.4
Carub.0008s2046 Capsella rubella HOM05D006496 ORTHO05D008390 3.7e-19 99.4 133 39.8
RcHm_v2.0_Chr5g0062921 Rosa chinensis HOM05D006496 ORTHO05D008390 4.9e-19 99.0 156 40.4
RcHm_v2.0_Chr5g0062931 Rosa chinensis HOM05D006496 ORTHO05D008390 6.4e-19 98.6 152 39.5
Thhalv10014093m.g Eutrema salsugineum HOM05D006496 ORTHO05D008390 1.4e-18 97.4 133 39.1
QL01p033240 Quercus lobata HOM05D006496 ORTHO05D008390 1.4e-18 97.4 167 38.9
QL01p033291 Quercus lobata HOM05D006496 ORTHO05D008390 1.4e-18 97.4 167 38.9
Aa31sc23G160 Aethionema arabicum HOM05D006496 ORTHO05D008390 3.2e-18 96.3 161 37.3
BcaC01g06549 Brassica carinata HOM05D006496 ORTHO05D008390 4.1e-18 95.9 133 40.6
A03p11480 Brassica napus HOM05D006496 ORTHO05D008390 4.1e-18 95.9 133 41.4
BolC3t13791H Brassica oleracea HOM05D006496 ORTHO05D008390 4.1e-18 95.9 133 40.6
BraA03t10462Z Brassica rapa HOM05D006496 ORTHO05D008390 4.1e-18 95.9 133 41.4
Sc06g0008220 Simmondsia chinensis HOM05D006496 ORTHO05D008390 7.0e-18 95.1 139 39.6
C03p13280 Brassica napus HOM05D006496 ORTHO05D008390 9.2e-18 94.7 133 40.6
TPR.G34315 Trifolium pratense HOM05D006496 ORTHO05D008390 9.2e-18 94.7 158 39.9
BcaB08g36218 Brassica carinata HOM05D006496 ORTHO05D008390 3.5e-17 92.8 133 39.8
CiPaw.13G099300 Carya illinoinensis HOM05D006496 ORTHO05D008390 3.5e-17 92.8 159 39.0
BcaC04g19631 Brassica carinata HOM05D006496 ORTHO05D008390 1.3e-16 90.9 133 39.1
A10p17060 Brassica napus HOM05D006496 ORTHO05D008390 1.3e-16 90.9 133 39.1
BolC9t58098H Brassica oleracea HOM05D006496 ORTHO05D008390 1.3e-16 90.9 133 39.1
C09p52290 Brassica napus HOM05D006496 ORTHO05D008390 1.7e-16 90.5 133 39.1
BraA10t43786Z Brassica rapa HOM05D006496 ORTHO05D008390 3.0e-16 89.7 170 34.1
FAN16G2573 Fragaria x ananassa HOM05D006496 ORTHO05D008390 3.0e-16 89.7 176 35.8
THA.LOC104810806 Tarenaya hassleriana HOM05D006496 ORTHO05D008390 3.0e-16 89.7 159 36.5
DCAR_018892 Daucus carota HOM05D006496 ORTHO05D008390 8.6e-16 88.2 145 38.6
Potri.009G027600 Populus trichocarpa HOM05D006496 ORTHO05D008390 1.1e-15 87.8 164 35.4
FAN21G2388 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.5e-15 87.4 176 35.8
Medtr2g096520 Medicago truncatula HOM05D006496 ORTHO05D008390 2.5e-15 86.7 155 38.1
DCAR_015607 Daucus carota HOM05D006496 ORTHO05D008390 7.3e-15 85.1 61 63.9
Thecc.09G327500 Theobroma cacao HOM05D006496 ORTHO05D008390 7.3e-15 85.1 159 35.2
EL10Ac7g15965 Beta vulgaris HOM05D006496 ORTHO05D008390 2.8e-14 83.2 124 40.3
GSVIVG01025031001 Vitis vinifera HOM05D006496 ORTHO05D008390 1.0e-13 81.3 143 34.3
Psat5g284080 Pisum sativum HOM05D006496 ORTHO05D008390 2.3e-13 80.1 148 39.2
FAN25G1110 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.3e-11 74.3 181 34.3
Glyma.13G333300 Glycine max HOM05D006496 ORTHO05D008390 1.9e-10 70.5 91 42.9
arahy.Tifrunner.gnm1.ann1.4RYS79 Arachis hypogaea HOM05D006496 ORTHO05D008390 1.3e-08 64.3 47 59.6
arahy.Tifrunner.gnm1.ann1.7PT1R0 Arachis hypogaea HOM05D006496 ORTHO05D008390 1.3e-08 64.3 47 59.6
Psat5g284120 Pisum sativum HOM05D006496 ORTHO05D008390 1.3e-08 64.3 55 54.5
Lj3g0009171 Lotus japonicus HOM05D006496 ORTHO05D008390 8.6e-08 61.6 51 54.9
ATR0680G240 Amborella trichopoda HOM05D003520 ORTHO05D003332 1.9e-07 60.5 145 29.7
Lj2g0020727 Lotus japonicus HOM05D003520 ORTHO05D003332 1.9e-07 60.5 134 33.6
Lj3g0006193 Lotus japonicus HOM05D006496 ORTHO05D008390 2.5e-07 60.1 48 60.4
QL01p033212 Quercus lobata HOM05D006496 ORTHO05D008390 2.5e-07 60.1 67 44.8
TPR.G34303 Trifolium pratense HOM05D006496 ORTHO05D008390 3.3e-07 59.7 49 57.1
Lalb_Chr22g0349991 Lupinus albus HOM05D006496 ORTHO05D008390 5.6e-07 58.9 64 45.3
Phvul.L002943 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 5.6e-07 58.9 45 55.6
Glyma.07G118700 Glycine max HOM05D006496 ORTHO05D008390 7.3e-07 58.5 49 59.2
Cfa008307 Carpinus fangiana HOM05D003520 ORTHO05D003332 9.5e-07 58.2 167 30.5
Phvul.004G007200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 2.8e-06 56.6 54 46.3
Phvul.004G006200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 8.1e-06 55.1 61 49.2


User provided reference genes

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