Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Peaxi162Scf00017g03036 Petunia axillaris HOM05D000251 ORTHO05D007889 0.0e+00 1846.2 1004 100.0
Nitab4.5_0000646g0050 Nicotiana tabacum HOM05D000251 ORTHO05D007889 0.0e+00 1513.4 1007 83.0
Nitab4.5_0004342g0020 Nicotiana tabacum HOM05D000251 ORTHO05D007889 0.0e+00 1471.8 987 82.5
Sopen03g033510 Solanum pennellii HOM05D000251 ORTHO05D007889 0.0e+00 1408.3 1005 78.7
Solyc03g114410.3 Solanum lycopersicum HOM05D000251 ORTHO05D007889 0.0e+00 1395.6 940 79.0
CAN.G781.3 Capsicum annuum HOM05D000251 ORTHO05D007889 0.0e+00 1382.5 936 79.2
Dinv36870 Davidia involucrata HOM05D000251 ORTHO05D007889 0.0e+00 1084.7 834 68.9
Cc04_g07720 Coffea canephora HOM05D000251 ORTHO05D007889 1.4e-311 1072.8 840 67.1
Lj9C433G11 Lonicera japonica HOM05D000251 ORTHO05D007889 6.6e-305 1050.8 829 66.1
CSS0040641 Camellia sinensis var. sinensis HOM05D000251 ORTHO05D007889 2.5e-304 1048.9 920 62.1
QL10p022316 Quercus lobata HOM05D000251 ORTHO05D007889 1.3e-300 1036.6 917 61.6
GSVIVG01008206001 Vitis vinifera HOM05D000251 ORTHO05D007889 1.1e-299 1033.5 926 63.2
CiPaw.15G123200 Carya illinoinensis HOM05D000251 ORTHO05D007889 1.4e-299 1033.1 920 62.0
Actinidia31039 Actinidia chinensis HOM05D000251 ORTHO05D007889 4.1e-299 1031.6 843 65.5
Rhsim08G0149100 Rhododendron simsii HOM05D000251 ORTHO05D007889 2.3e-294 1015.8 914 61.8
Cfa019845 Carpinus fangiana HOM05D000251 ORTHO05D007889 3.1e-294 1015.4 979 59.1
TAR622G0769 Trochodendron aralioides HOM05D000251 ORTHO05D007889 3.1e-294 1015.4 870 62.6
COL.COLO4_32187 Corchorus olitorius HOM05D000251 ORTHO05D007889 6.8e-294 1014.2 929 60.5
Atru.chr9.705 Acer truncatum HOM05D000251 ORTHO05D007889 1.7e-292 1009.6 911 61.8
Duzib205G0552 Durio zibethinus HOM05D000251 ORTHO05D007889 6.4e-292 1007.7 919 60.7
Prupe.5G214300 Prunus persica HOM05D000251 ORTHO05D007889 6.4e-292 1007.7 921 61.0
Thecc.03G114900 Theobroma cacao HOM05D000251 ORTHO05D007889 8.3e-292 1007.3 922 60.4
Potri.012G058100 Populus trichocarpa HOM05D000251 ORTHO05D007889 1.2e-290 1003.4 946 59.6
Ciclev10018692m.g Citrus clementina HOM05D000251 ORTHO05D007889 2.7e-290 1002.3 927 60.7
Nn4g23656 Nelumbo nucifera HOM05D000251 ORTHO05D007889 2.3e-286 989.2 935 59.1
Gohir.A03G074400 Gossypium hirsutum HOM05D000251 ORTHO05D007889 4.4e-285 984.9 873 60.7
MD06G1209200 Malus domestica HOM05D000251 ORTHO05D007889 1.7e-284 983.0 1009 58.4
MD14G1219700 Malus domestica HOM05D000251 ORTHO05D007889 2.9e-284 982.2 933 59.3
Ca_02522_v3 Cicer arietinum L. HOM05D000251 ORTHO05D007889 8.4e-284 980.7 815 64.3
PGR044G2008 Punica granatum HOM05D000251 ORTHO05D007889 1.1e-283 980.3 817 64.0
Gorai.003G106300 Gossypium raimondii HOM05D000251 ORTHO05D007889 1.9e-283 979.5 900 59.4
arahy.Tifrunner.gnm1.ann1.ESZ5GR Arachis hypogaea HOM05D000251 ORTHO05D007889 9.2e-283 977.2 930 59.2
Psat4g045640 Pisum sativum HOM05D000251 ORTHO05D007889 1.2e-282 976.9 815 63.9
arahy.Tifrunner.gnm1.ann1.MAJ7P0 Arachis hypogaea HOM05D000251 ORTHO05D007889 1.7e-281 973.0 936 59.0
Sabra12G0041800 Salix brachista HOM05D000251 ORTHO05D007889 1.7e-281 973.0 954 57.7
Gohir.D03G100900 Gossypium hirsutum HOM05D000251 ORTHO05D007889 3.9e-281 971.8 934 58.2
CANSAT80G2803 Cannabis sativa HOM05D000251 ORTHO05D007889 8.6e-281 970.7 814 63.3
Lalb_Chr12g0197521 Lupinus albus HOM05D000251 ORTHO05D007889 1.5e-280 969.9 909 59.1
Lsat_1_v5_gn_5_24161 Lactuca sativa HOM05D000251 ORTHO05D007889 5.6e-280 968.0 838 63.1
TWI81G0067 Tripterygium wilfordii HOM05D000251 ORTHO05D007889 1.6e-279 966.5 915 59.3
SGA_v2.0_scaffold283G46981 Striga asiatica HOM05D000251 ORTHO05D007889 2.1e-279 966.1 947 57.3
RcHm_v2.0_Chr7g0184311 Rosa chinensis HOM05D000251 ORTHO05D007889 2.8e-279 965.7 919 59.6
CsaV3_1G003490 Cucumis sativus L. HOM05D000251 ORTHO05D007889 2.4e-278 962.6 919 59.2
HanXRQChr05g0157761 Helianthus annuus HOM05D000251 ORTHO05D007889 4.0e-278 961.8 899 59.7
Glyma.17G123700 Glycine max HOM05D000251 ORTHO05D007889 6.8e-278 961.1 917 58.0
FAN18G2230 Fragaria x ananassa HOM05D000251 ORTHO05D007889 2.6e-277 959.1 878 59.8
VMungo1215G2774 Vigna mungo HOM05D000251 ORTHO05D007889 3.4e-277 958.7 894 59.1
Lj4g0022759 Lotus japonicus HOM05D000251 ORTHO05D007889 4.9e-276 954.9 945 57.1
Medtr4g112420 Medicago truncatula HOM05D000251 ORTHO05D007889 2.4e-275 952.6 989 57.4
Carub.0006s2087 Capsella rubella HOM05D000251 ORTHO05D007889 1.2e-274 950.3 820 62.9
Glyma.05G015200 Glycine max HOM05D000251 ORTHO05D007889 1.6e-274 949.9 932 57.4
AL6G34270 Arabidopsis lyrata HOM05D000251 ORTHO05D007889 1.0e-273 947.2 837 62.6
ECA246G2449 Erigeron canadensis HOM05D000251 ORTHO05D007889 3.9e-273 945.3 809 63.5
FAN13G2548 Fragaria x ananassa HOM05D000251 ORTHO05D000414 5.1e-273 944.9 814 62.5
FvH4_5g12911 Fragaria vesca HOM05D000251 ORTHO05D007889 1.9e-272 943.0 921 57.7
Sed0011411 Sechium edule HOM05D000251 ORTHO05D007889 1.9e-272 943.0 911 58.1
AT5G23080 Arabidopsis thaliana HOM05D000251 ORTHO05D007889 2.5e-272 942.6 825 63.0
Sp2g24040 Schrenkiella parvula HOM05D000251 ORTHO05D007889 2.5e-272 942.6 882 59.6
Migut.G01282 Erythranthe guttata HOM05D000251 ORTHO05D007889 9.6e-272 940.6 820 62.2
Aa31LG11G2570 Aethionema arabicum HOM05D000251 ORTHO05D007889 2.1e-271 939.5 810 63.1
DCAR_015126 Daucus carota HOM05D000251 ORTHO05D007889 2.8e-271 939.1 985 55.4
Eucgr.K02644 Eucalyptus grandis HOM05D000251 ORTHO05D007889 2.8e-271 939.1 942 58.6
A03p46430 Brassica napus HOM05D000251 ORTHO05D007889 8.1e-271 937.6 816 63.2
BraA03t13769Z Brassica rapa HOM05D000251 ORTHO05D007889 3.1e-270 935.6 881 59.5
THA.LOC104819385 Tarenaya hassleriana HOM05D000251 ORTHO05D007889 3.4e-269 932.2 819 62.4
Aqoxy3G00409 Aquilegia oxysepala HOM05D000251 ORTHO05D007889 1.7e-268 929.9 848 60.0
C07p44450 Brassica napus HOM05D000251 ORTHO05D007889 4.2e-267 925.2 891 59.4
Thhalv10003608m.g Eutrema salsugineum HOM05D000251 ORTHO05D007889 4.2e-267 925.2 820 61.6
BolC7t44966H Brassica oleracea HOM05D000251 ORTHO05D007889 5.4e-267 924.9 891 59.3
Haze_18572 Corylus avellana HOM05D000251 ORTHO05D007889 5.4e-267 924.9 914 57.9
TPR.G2793 Trifolium pratense HOM05D000251 ORTHO05D007889 1.6e-266 923.3 925 56.2
Manes.05G117300 Manihot esculenta HOM05D000251 ORTHO05D007889 2.7e-266 922.5 743 66.8
EL10Ac5g11229 Beta vulgaris HOM05D000251 ORTHO05D007889 1.3e-265 920.2 904 56.7
BcaC04g23479 Brassica carinata HOM05D000251 ORTHO05D007889 1.9e-264 916.4 815 60.9
BolC9t53705H Brassica oleracea HOM05D000251 ORTHO05D007889 1.9e-264 916.4 815 60.9
FAN18G3790 Fragaria x ananassa HOM05D000251 ORTHO05D007889 4.8e-263 911.8 962 54.4
A09p07070 Brassica napus HOM05D000251 ORTHO05D007889 8.1e-263 911.0 815 61.1
BraA09t36355Z Brassica rapa HOM05D000251 ORTHO05D007889 8.1e-263 911.0 924 56.7
vmacro17646 Vaccinium macrocarpon HOM05D000251 ORTHO05D007889 9.0e-262 907.5 1027 51.9
C09p07920 Brassica napus HOM05D000251 ORTHO05D007889 1.2e-261 907.1 815 60.2
ClCG06G015150 Citrullus lanatus HOM05D000251 ORTHO05D007889 4.5e-261 905.2 941 55.0
MELO3C017274.2 Cucumis melo HOM05D000251 ORTHO05D007889 7.6e-261 904.4 904 56.2
AUR62036928 Chenopodium quinoa HOM05D000251 ORTHO05D007889 3.8e-260 902.1 898 56.3
Hund02531 Selenicereus undatus HOM05D000251 ORTHO05D007889 5.1e-257 891.7 873 57.8
Rhsim08G0139200 Rhododendron simsii HOM05D000251 ORTHO05D007889 4.0e-254 882.1 694 66.9
Sc10g0009620 Simmondsia chinensis HOM05D000251 ORTHO05D007889 2.5e-251 872.8 741 62.5
BcaB04g19889 Brassica carinata HOM05D000251 ORTHO05D007889 9.3e-251 870.9 820 59.6
PSO017G5760 Papaver somniferum HOM05D000251 ORTHO05D007889 1.8e-249 866.7 835 58.3
Cpa.g.sc13.78 Carica papaya HOM05D000251 ORTHO05D007889 1.5e-248 863.6 741 62.6
PSO478G4362 Papaver somniferum HOM05D000251 ORTHO05D007889 1.1e-246 857.4 843 57.7
SalBow2G1753 Salvia bowleyana HOM05D000251 ORTHO05D007889 1.4e-243 847.0 839 56.4
AUR62032169 Chenopodium quinoa HOM05D000251 ORTHO05D007889 2.1e-242 843.2 817 57.0
CDE08G0099 Ceratophyllum demersum HOM05D000251 ORTHO05D007889 1.0e-233 814.3 800 54.6
unitig_736.g22471 Utricularia gibba HOM05D000251 ORTHO05D007889 1.4e-233 813.9 889 54.1
Phvul.003G179400 Phaseolus vulgaris HOM05D000251 ORTHO05D007889 2.9e-228 796.2 825 54.8
ATR0723G093 Amborella trichopoda HOM05D000251 ORTHO05D007889 1.6e-226 790.4 805 55.2
Os06g0489200 Oryza sativa ssp. japonica HOM05D000251 ORTHO05D007889 8.0e-218 761.5 886 50.5
Ah.02g114420 Amaranthus hybridus HOM05D000251 ORTHO05D007889 2.6e-208 729.9 774 53.4
AagrBONN_evm.TU.Sc2ySwM_344.5190 Anthoceros agrestis HOM05D000251 ORTHO05D007889 4.1e-166 589.7 864 44.7
Nn039s41709 Nelumbo nucifera HOM05D000251 ORTHO05D007889 3.6e-162 576.6 506 60.9
Pp3c6_280 Physcomitrium patens HOM05D000251 ORTHO05D007889 1.0e-156 558.5 960 41.1
SMO358G0348 Selaginella moellendorffii HOM05D000251 ORTHO05D007889 5.4e-150 536.2 858 40.7
CARHR190450 Cardamine hirsuta HOM05D000251 ORTHO05D007889 5.5e-142 509.6 589 51.1
Mapoly0043s0012 Marchantia polymorpha HOM05D000251 ORTHO05D007889 3.0e-140 503.8 893 38.6
HPP92_003115 Vanilla planifolia HOM05D000251 ORTHO05D007889 1.2e-133 481.9 669 45.7
Hma1.2p1_0595F.1_g186110 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 2.7e-125 454.1 353 66.0
SEGI_18733 Sequoiadendron giganteum HOM05D000251 ORTHO05D007889 1.5e-120 438.3 441 54.2
CBR_g57132 Chara braunii HOM05D000251 ORTHO05D007889 2.5e-94 351.3 1037 31.1
Hma1.2p1_0595F.1_g186100 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 1.7e-90 338.6 226 76.1
Zm00001eb382170 Zea mays HOM05D000251 ORTHO05D007889 1.5e-83 315.5 524 41.2
MCO14G468 Micromonas commoda HOM05D000251 ORTHO05D007889 6.2e-61 240.4 740 32.0
Actinidia16061 Actinidia chinensis HOM05D000251 ORTHO05D007889 6.6e-55 220.3 194 57.7
Cre13.g568700 Chlamydomonas reinhardtii HOM05D000251 ORTHO05D007889 1.6e-45 189.1 350 38.6
Psat4g067080 Pisum sativum HOM05D000251 ORTHO05D007889 6.2e-45 187.2 231 46.8
BcaC06g33188 Brassica carinata HOM05D000251 ORTHO05D007889 1.4e-44 186.0 309 44.3
Ah.02g114430 Amaranthus hybridus HOM05D000169 ORTHO05D000542 2.9e-42 178.3 106 82.1
SHI18972 Sapria himalayana HOM05D000251 ORTHO05D007889 4.9e-42 177.6 107 78.5
CiPaw.15G123400 Carya illinoinensis HOM05D000251 ORTHO05D007889 1.5e-30 139.4 93 76.3
Actinidia16060 Actinidia chinensis HOM05D000251 ORTHO05D007889 9.9e-27 126.7 163 46.6
Cfa026338 Carpinus fangiana HOM05D000251 ORTHO05D007889 3.3e-22 111.7 798 24.8
GSVIVG01008210001 Vitis vinifera HOM05D000251 ORTHO05D007889 3.7e-21 108.2 73 76.7
Rhsim08G0139300 Rhododendron simsii HOM05D000251 ORTHO05D007889 1.3e-15 89.7 259 32.8
Hma1.2p1_0690F.1_g203840 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 6.9e-12 77.4 46 78.3
CiPaw.07G210700 Carya illinoinensis HOM05D005511 ORTHO05D006616 3.0e-07 62.0 89 44.9
Atru.chr7.2702 Acer truncatum HOM05D005511 ORTHO05D006616 5.1e-07 61.2 89 36.0
Dinv37487 Davidia involucrata HOM05D005511 ORTHO05D006616 6.7e-07 60.8 92 37.0
ClCG05G026390 Citrullus lanatus HOM05D005511 ORTHO05D006616 8.8e-07 60.5 89 40.4
Potri.018G002000 Populus trichocarpa HOM05D005511 ORTHO05D006616 1.1e-06 60.1 85 42.4
CANSAT25G2351 Cannabis sativa HOM05D005511 ORTHO05D006616 1.5e-06 59.7 126 33.3
CsaV3_5G010440 Cucumis sativus L. HOM05D005511 ORTHO05D006616 2.5e-06 58.9 103 34.0
Gohir.A06G108200 Gossypium hirsutum HOM05D005511 ORTHO05D006616 2.5e-06 58.9 95 34.7
GSVIVG01029743001 Vitis vinifera HOM05D005511 ORTHO05D006616 2.5e-06 58.9 89 42.7
COL.COLO4_18647 Corchorus olitorius HOM05D005511 ORTHO05D006616 3.3e-06 58.5 95 34.7
Eucgr.H04509 Eucalyptus grandis HOM05D005511 ORTHO05D006616 3.3e-06 58.5 94 39.4
MELO3C018377.2 Cucumis melo HOM05D005511 ORTHO05D006616 5.7e-06 57.8 89 36.0
Thecc.09G000500 Theobroma cacao HOM05D005511 ORTHO05D006616 5.7e-06 57.8 89 34.8
TWI34G0645 Tripterygium wilfordii HOM05D005511 ORTHO05D006616 5.7e-06 57.8 95 38.9
CBR_g29483 Chara braunii HOM05D000785 ORTHO05D006616 7.4e-06 57.4 80 38.8
QL12p025629 Quercus lobata HOM05D005511 ORTHO05D006616 7.4e-06 57.4 94 37.2


User provided reference genes

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