Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO832G2870 Papaver somniferum HOM05D005363 ORTHO05D006607 0.0e+00 1387.9 734 100.0
PSO210G7030 Papaver somniferum HOM05D005363 ORTHO05D006607 0.0e+00 1345.9 735 97.1
TAR629G3355 Trochodendron aralioides HOM05D005363 ORTHO05D006607 0.0e+00 1100.1 736 79.6
CiPaw.11G177000 Carya illinoinensis HOM05D005363 ORTHO05D006607 6.1e-308 1060.4 738 75.7
Aqoxy1G03881 Aquilegia oxysepala HOM05D005363 ORTHO05D006607 1.1e-304 1049.7 738 77.6
Thecc.07G070700 Theobroma cacao HOM05D005363 ORTHO05D006607 2.5e-301 1038.5 743 75.1
CANSAT11G0579 Cannabis sativa HOM05D005363 ORTHO05D006607 1.0e-299 1033.1 736 75.1
Duzib170G0704 Durio zibethinus HOM05D005363 ORTHO05D006607 1.4e-299 1032.7 739 75.8
QL08p017669 Quercus lobata HOM05D005363 ORTHO05D006607 5.1e-299 1030.8 790 71.1
Nn1g03887 Nelumbo nucifera HOM05D005363 ORTHO05D006607 9.7e-298 1026.5 734 75.6
Potri.001G407300 Populus trichocarpa HOM05D005363 ORTHO05D006607 4.8e-297 1024.2 738 75.3
GSVIVG01014441001 Vitis vinifera HOM05D005363 ORTHO05D006607 1.2e-295 1019.6 739 74.7
Actinidia35283 Actinidia chinensis HOM05D005363 ORTHO05D006607 3.8e-294 1014.6 739 74.7
COL.COLO4_09485 Corchorus olitorius HOM05D005363 ORTHO05D006607 8.5e-294 1013.4 742 74.5
Manes.15G082900 Manihot esculenta HOM05D005363 ORTHO05D006607 1.4e-293 1012.7 740 73.8
MSTRG.5819 Avicennia marina HOM05D005363 ORTHO05D006607 1.9e-293 1012.3 746 72.5
Ciclev10007579m.g Citrus clementina HOM05D005363 ORTHO05D006607 2.5e-293 1011.9 742 72.9
HanXRQChr03g0077211 Helianthus annuus HOM05D005363 ORTHO05D006607 1.6e-292 1009.2 737 72.0
CSS0003917 Camellia sinensis var. sinensis HOM05D005363 ORTHO05D006607 6.1e-292 1007.3 725 74.1
Cpa.g.sc12.44 Carica papaya HOM05D005363 ORTHO05D006607 6.1e-292 1007.3 730 74.7
PGR083G1158 Punica granatum HOM05D005363 ORTHO05D006607 8.0e-292 1006.9 744 74.2
Sc03g0009580 Simmondsia chinensis HOM05D005363 ORTHO05D006607 3.9e-291 1004.6 733 74.5
RcHm_v2.0_Chr5g0036071 Rosa chinensis HOM05D005363 ORTHO05D006607 2.0e-290 1002.3 734 72.6
Dinv08347 Davidia involucrata HOM05D005363 ORTHO05D006607 2.8e-289 998.4 756 71.7
ECA240G2604 Erigeron canadensis HOM05D005363 ORTHO05D006607 2.8e-289 998.4 739 72.3
Gorai.009G430700 Gossypium raimondii HOM05D005363 ORTHO05D006607 4.1e-288 994.6 737 73.7
Prupe.4G191100 Prunus persica HOM05D005363 ORTHO05D006607 5.3e-288 994.2 734 72.5
Migut.J00972 Erythranthe guttata HOM05D005363 ORTHO05D006607 7.0e-288 993.8 735 72.8
Glyma.12G219100 Glycine max HOM05D005363 ORTHO05D006607 7.0e-288 993.8 730 72.5
arahy.Tifrunner.gnm1.ann1.42XSYF Arachis hypogaea HOM05D005363 ORTHO05D006607 1.6e-287 992.6 727 73.7
HPP92_026561 Vanilla planifolia HOM05D005363 ORTHO05D006607 1.6e-287 992.6 718 73.5
Oeu009902.1 Olea europaea HOM05D005363 ORTHO05D006607 4.5e-287 991.1 743 73.5
Gohir.D05G362100 Gossypium hirsutum HOM05D005363 ORTHO05D006607 5.9e-287 990.7 737 73.5
arahy.Tifrunner.gnm1.ann1.3P80NP Arachis hypogaea HOM05D005363 ORTHO05D006607 2.2e-286 988.8 725 72.8
MD11G1235900 Malus domestica HOM05D005363 ORTHO05D006607 5.0e-286 987.6 737 72.5
Phvul.005G085700 Phaseolus vulgaris HOM05D005363 ORTHO05D006607 8.5e-286 986.9 730 72.7
MD03G1218100 Malus domestica HOM05D005363 ORTHO05D006607 1.8e-283 979.2 737 71.5
HPP92_026534 Vanilla planifolia HOM05D005363 ORTHO05D006607 2.3e-283 978.8 730 71.0
Lsat_1_v5_gn_9_95600 Lactuca sativa HOM05D005363 ORTHO05D006607 4.0e-283 978.0 738 72.2
ATR0693G020 Amborella trichopoda HOM05D005363 ORTHO05D006607 1.5e-282 976.1 723 71.6
SalBow3G2312 Salvia bowleyana HOM05D005363 ORTHO05D006607 7.5e-282 973.8 762 70.1
Psat2g184560 Pisum sativum HOM05D005363 ORTHO05D006607 3.7e-281 971.5 727 72.2
Lalb_Chr25g0286791 Lupinus albus HOM05D005363 ORTHO05D006607 3.1e-280 968.4 736 71.2
vmacro09564 Vaccinium macrocarpon HOM05D005363 ORTHO05D006607 9.1e-280 966.8 684 75.7
FvH4_3g21040 Fragaria vesca HOM05D005363 ORTHO05D006607 2.0e-279 965.7 734 72.9
FAN11G3021 Fragaria x ananassa HOM05D005363 ORTHO05D006607 7.7e-279 963.8 734 72.6
FAN21G3123 Fragaria x ananassa HOM05D005363 ORTHO05D006607 6.5e-278 960.7 729 69.7
Lj3g0015043 Lotus japonicus HOM05D005363 ORTHO05D006607 6.5e-278 960.7 729 71.5
FAN25G3415 Fragaria x ananassa HOM05D005363 ORTHO05D006607 1.6e-276 956.1 733 71.8
SGA_v2.0_scaffold13G06767 Striga asiatica HOM05D005363 ORTHO05D006607 3.6e-276 954.9 749 70.1
Zm00001eb069270 Zea mays HOM05D005363 ORTHO05D006607 1.4e-275 953.0 730 70.5
Sabra16G0268700 Salix brachista HOM05D005363 ORTHO05D006607 4.0e-275 951.4 730 72.6
EL10Ac4g08052 Beta vulgaris HOM05D005363 ORTHO05D006607 2.6e-274 948.7 770 67.0
MBI15_g19746_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 3.4e-274 948.3 681 73.0
Medtr2g081100 Medicago truncatula HOM05D005363 ORTHO05D006607 4.4e-274 948.0 716 71.9
Aa31LG3G10220 Aethionema arabicum HOM05D005363 ORTHO05D006607 7.5e-274 947.2 739 70.2
Sabra16G0270900 Salix brachista HOM05D005363 ORTHO05D006607 1.3e-273 946.4 670 75.2
CARHR267540 Cardamine hirsuta HOM05D005363 ORTHO05D006607 1.7e-273 946.0 733 70.9
AT5G54260 Arabidopsis thaliana HOM05D005363 ORTHO05D006607 1.1e-272 943.3 732 72.1
Sp6g16300 Schrenkiella parvula HOM05D005363 ORTHO05D006607 2.4e-272 942.2 730 71.4
Haze_09533 Corylus avellana HOM05D005363 ORTHO05D006607 2.7e-271 938.7 808 66.2
CsaV3_3G044350 Cucumis sativus L. HOM05D005363 ORTHO05D006607 4.5e-271 937.9 738 69.8
Hund02186 Selenicereus undatus HOM05D005363 ORTHO05D006607 5.9e-271 937.6 757 68.7
Hma1.2p1_1176F.1_g264200 Hydrangea macrophylla HOM05D005363 ORTHO05D006607 1.0e-270 936.8 753 68.4
BcaC04g20356 Brassica carinata HOM05D005363 ORTHO05D006607 5.0e-270 934.5 732 71.4
Thhalv10012804m.g Eutrema salsugineum HOM05D005363 ORTHO05D006607 2.5e-269 932.2 733 71.2
ClCG11G018480 Citrullus lanatus HOM05D005363 ORTHO05D006607 5.5e-269 931.0 729 69.7
Os04g0635900 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 9.5e-269 930.2 728 68.4
BcaB08g35781 Brassica carinata HOM05D005363 ORTHO05D006607 2.8e-268 928.7 730 71.0
TPR.G32857 Trifolium pratense HOM05D005363 ORTHO05D006607 6.1e-268 927.5 625 75.7
Carub.0008s1460 Capsella rubella HOM05D005363 ORTHO05D006607 8.0e-268 927.2 613 78.1
Sopen09g004090 Solanum pennellii HOM05D005363 ORTHO05D006607 5.2e-267 924.5 577 78.9
BolC9t57330H Brassica oleracea HOM05D005363 ORTHO05D006607 3.4e-266 921.8 738 70.7
BraA10t43250Z Brassica rapa HOM05D005363 ORTHO05D006607 9.8e-266 920.2 738 70.7
CAN.G824.3 Capsicum annuum HOM05D005363 ORTHO05D006607 4.1e-264 914.8 672 71.7
AL8G29590 Arabidopsis lyrata HOM05D005363 ORTHO05D006607 5.4e-264 914.4 713 71.7
Gohir.D01G056400 Gossypium hirsutum HOM05D005363 ORTHO05D006607 5.9e-263 911.0 721 70.2
RhsimUnG0258300 Rhododendron simsii HOM05D005363 ORTHO05D006607 5.9e-263 911.0 670 71.2
Sed0012869 Sechium edule HOM05D005363 ORTHO05D006607 6.6e-262 907.5 724 68.5
Lj8C160T16 Lonicera japonica HOM05D005363 ORTHO05D006607 4.3e-261 904.8 749 69.4
C09p44570 Brassica napus HOM05D005363 ORTHO05D006607 1.2e-260 903.3 661 73.2
Cc06_g05460 Coffea canephora HOM05D005363 ORTHO05D006607 1.4e-259 899.8 505 85.7
THA.LOC104813315 Tarenaya hassleriana HOM05D005363 ORTHO05D006607 2.3e-259 899.0 521 83.5
A10p11550 Brassica napus HOM05D005363 ORTHO05D006607 4.0e-259 898.3 663 72.7
SHI33827 Sapria himalayana HOM05D005363 ORTHO05D006607 7.5e-258 894.0 732 64.5
DCAR_018424 Daucus carota HOM05D005363 ORTHO05D006607 2.9e-257 892.1 649 74.7
unitig_8.g4146 Utricularia gibba HOM05D005363 ORTHO05D006607 2.3e-254 882.5 724 66.2
Peaxi162Scf00290g00111 Petunia axillaris HOM05D005363 ORTHO05D006607 5.6e-253 877.9 624 74.4
Gorai.002G076500 Gossypium raimondii HOM05D005363 ORTHO05D006607 2.1e-252 875.9 744 66.9
Gohir.A04G025700 Gossypium hirsutum HOM05D005363 ORTHO05D006607 7.5e-250 867.5 751 66.7
VMungo1080G1535 Vigna mungo HOM05D005363 ORTHO05D006607 1.8e-243 846.3 473 85.4
MELO3C018187.2 Cucumis melo HOM05D005363 ORTHO05D006607 1.2e-236 823.5 737 63.9
AUR62029306 Chenopodium quinoa HOM05D005363 ORTHO05D006607 2.1e-236 822.8 806 57.4
AUR62015595 Chenopodium quinoa HOM05D005363 ORTHO05D006607 5.6e-229 798.1 684 63.2
Gohir.A04G026000 Gossypium hirsutum HOM05D005363 ORTHO05D006607 5.8e-226 788.1 634 69.4
FAN16G0276 Fragaria x ananassa HOM05D005363 ORTHO05D006607 4.6e-223 778.5 739 62.2
Pp3c24_2350 Physcomitrium patens HOM05D005363 ORTHO05D006607 8.1e-220 767.7 614 65.3
Mapoly0023s0117 Marchantia polymorpha HOM05D005363 ORTHO05D006607 6.9e-219 764.6 751 56.7
AagrBONN_evm.TU.Sc2ySwM_117.2240 Anthoceros agrestis HOM05D005363 ORTHO05D006607 8.4e-217 757.7 743 59.1
SMO347G0170 Selaginella moellendorffii HOM05D005363 ORTHO05D006607 1.1e-208 730.7 509 70.1
CDE12G0672 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 5.8e-202 708.4 414 82.6
Atru.chr2.2913 Acer truncatum HOM05D005363 ORTHO05D006607 1.3e-185 654.1 344 89.5
CBR_g48040 Chara braunii HOM05D005363 ORTHO05D006607 7.2e-184 648.3 550 58.5
Zm00001eb171920 Zea mays HOM05D005363 ORTHO05D006607 8.5e-177 624.8 489 61.1
Nitab4.5_0001969g0080 Nicotiana tabacum HOM05D005363 ORTHO05D006607 1.9e-176 623.6 693 55.6
Os08g0177600 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 6.1e-175 618.6 534 57.9
Eucgr.F01076 Eucalyptus grandis HOM05D005363 ORTHO05D006607 1.2e-167 594.3 555 63.6
Ca_01813_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 1.2e-162 577.8 360 77.8
Nitab4.5_0007366g0050 Nicotiana tabacum HOM05D005363 ORTHO05D006607 4.1e-147 526.2 493 61.3
Cre12.g556911 Chlamydomonas reinhardtii HOM05D005363 ORTHO05D006607 3.1e-134 483.4 503 50.1
MCO13G379 Micromonas commoda HOM05D005363 ORTHO05D006607 4.3e-128 463.0 529 47.8
unitig_13.g31430 Utricularia gibba HOM05D005363 ORTHO05D006607 1.4e-126 458.0 492 54.1
SEGI_22122 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 1.6e-122 444.5 255 79.2
PRCOL_00003292 Prasinoderma coloniale HOM05D005363 ORTHO05D006607 3.4e-117 426.8 562 43.8
Cfa025591 Carpinus fangiana HOM05D005363 ORTHO05D006607 2.4e-102 377.5 513 39.0
Nitab4.5_0007366g0060 Nicotiana tabacum HOM05D005363 ORTHO05D006607 1.3e-100 371.7 214 83.2
Atru.chr2.2912 Acer truncatum HOM05D005363 ORTHO05D006607 4.5e-93 346.7 383 60.1
PGSC0003DMG400002669 Solanum tuberosum HOM05D005363 ORTHO05D006607 1.0e-92 345.5 179 90.5
CAN.G397.4 Capsicum annuum HOM05D005363 ORTHO05D006607 5.0e-84 316.6 263 62.0
MBI09_g27609_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 7.9e-74 282.7 157 85.4
CDE12G0487 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 9.7e-64 249.2 319 51.4
Eucgr.C01186 Eucalyptus grandis HOM05D005363 ORTHO05D006607 1.7e-63 248.4 369 51.2
CDE12G0057 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 9.4e-59 232.6 172 66.9
SEGI_32923 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 5.0e-44 183.7 101 85.1
Ca_01800_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 1.6e-37 162.2 245 49.4
Ca_30473_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 5.9e-37 160.2 233 50.6
SEGI_35588 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 6.6e-36 156.8 301 42.9
GSVIVG01001519001 Vitis vinifera HOM05D005363 ORTHO05D006607 2.7e-29 134.8 95 71.6
CDE12G0011 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 7.3e-27 126.7 76 82.9
arahy.Tifrunner.gnm1.ann1.Q8WXS4 Arachis hypogaea HOM05D005363 ORTHO05D006607 4.0e-17 94.4 98 51.0
Cc06_g05450 Coffea canephora HOM05D005363 ORTHO05D006607 1.9e-14 85.5 234 42.3
THA.LOC104811844 Tarenaya hassleriana HOM05D005363 ORTHO05D006607 2.1e-10 72.0 204 41.7
GSVIVG01004486001 Vitis vinifera HOM05D004774 ORTHO05D005514 7.1e-06 57.0 205 31.2


User provided reference genes

Program Settings