Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO761G0652 Papaver somniferum HOM05D004146 ORTHO05D004843 7.4e-256 886.7 455 100.0
PSO210G5259 Papaver somniferum HOM05D004146 ORTHO05D004843 1.2e-240 836.3 455 94.7
Nn2g12083 Nelumbo nucifera HOM05D004146 ORTHO05D004843 3.8e-175 618.6 453 71.7
TAR633G1592 Trochodendron aralioides HOM05D004146 ORTHO05D004843 1.1e-171 607.1 452 70.1
Ciclev10020117m.g Citrus clementina HOM05D004146 ORTHO05D004843 2.5e-171 605.9 451 71.2
Dinv12116 Davidia involucrata HOM05D004146 ORTHO05D004843 2.1e-170 602.8 452 70.6
GSVIVG01028167001 Vitis vinifera HOM05D004146 ORTHO05D004843 3.7e-170 602.1 452 70.1
Gohir.D08G141300 Gossypium hirsutum HOM05D004146 ORTHO05D004843 2.0e-168 596.3 453 70.2
Aqoxy2G00845 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 3.4e-168 595.5 452 69.9
Rhsim13G0002300 Rhododendron simsii HOM05D004146 ORTHO05D004843 5.8e-168 594.7 453 69.1
QL12p018794 Quercus lobata HOM05D004146 ORTHO05D004843 1.0e-167 594.0 452 71.2
Thecc.01G319000 Theobroma cacao HOM05D004146 ORTHO05D004843 1.0e-167 594.0 452 70.8
Actinidia17925 Actinidia chinensis HOM05D004146 ORTHO05D004843 1.7e-167 593.2 453 69.8
CSS0038119 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 3.8e-167 592.0 453 68.2
Gorai.004G145300 Gossypium raimondii HOM05D004146 ORTHO05D004843 3.8e-167 592.0 455 69.7
Gohir.A08G120400 Gossypium hirsutum HOM05D004146 ORTHO05D004843 1.4e-166 590.1 455 69.5
COL.COLO4_23187 Corchorus olitorius HOM05D004146 ORTHO05D004843 2.5e-166 589.3 455 68.8
Manes.05G012300 Manihot esculenta HOM05D004146 ORTHO05D004843 3.2e-166 589.0 452 69.7
CSS0021664 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 3.5e-165 585.5 453 68.0
Potri.014G117400 Populus trichocarpa HOM05D004146 ORTHO05D004843 6.0e-165 584.7 453 69.8
Atru.chr5.940 Acer truncatum HOM05D004146 ORTHO05D004843 3.9e-164 582.0 453 69.3
Sopen01g030990 Solanum pennellii HOM05D004146 ORTHO05D004843 1.1e-163 580.5 453 68.2
Eucgr.K03560 Eucalyptus grandis HOM05D004146 ORTHO05D004843 2.5e-163 579.3 452 69.0
PGSC0003DMG400009054 Solanum tuberosum HOM05D004146 ORTHO05D004843 7.4e-163 577.8 453 67.8
Cc01_g21680 Coffea canephora HOM05D004146 ORTHO05D004843 1.6e-162 576.6 464 66.6
TWI14G0575 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 2.8e-162 575.9 453 69.1
Dinv39081 Davidia involucrata HOM05D004146 ORTHO05D004843 3.7e-162 575.5 488 64.8
CAN.G293.4 Capsicum annuum HOM05D004146 ORTHO05D004843 6.3e-162 574.7 454 67.2
CSS0047407 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 1.1e-161 573.9 453 66.9
EL10As5g23605 Beta vulgaris HOM05D004146 ORTHO05D004843 1.8e-161 573.2 453 67.5
Sabra14G0087100 Salix brachista HOM05D004146 ORTHO05D004843 4.1e-161 572.0 457 68.1
Cpa.g.sc18.100 Carica papaya HOM05D004146 ORTHO05D004843 6.9e-161 571.2 453 69.5
vmacro02380 Vaccinium macrocarpon HOM05D004146 ORTHO05D004843 9.0e-161 570.9 459 67.3
TWI23G0480 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 2.0e-160 569.7 453 68.2
CiPaw.08G086700 Carya illinoinensis HOM05D004146 ORTHO05D004843 1.3e-159 567.0 452 67.9
Sc24g0004180 Simmondsia chinensis HOM05D004146 ORTHO05D004843 1.2e-157 560.5 452 66.2
AUR62024599 Chenopodium quinoa HOM05D004146 ORTHO05D004843 2.7e-157 559.3 453 64.2
VMungo1383G2606 Vigna mungo HOM05D004146 ORTHO05D004843 6.1e-157 558.1 451 67.0
ECA236G0429 Erigeron canadensis HOM05D004146 ORTHO05D004843 7.9e-157 557.8 453 67.3
PGR083G0515 Punica granatum HOM05D004146 ORTHO05D004843 7.9e-157 557.8 452 66.4
Phvul.001G214900 Phaseolus vulgaris HOM05D004146 ORTHO05D004843 1.3e-156 557.0 451 66.7
ATR0564G334 Amborella trichopoda HOM05D004146 ORTHO05D004843 1.8e-156 556.6 453 66.0
Aqoxy4G02480 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 3.0e-156 555.8 454 66.3
MSTRG.21711 Avicennia marina HOM05D004146 ORTHO05D004843 4.3e-155 552.0 455 64.4
RcHm_v2.0_Chr3g0486991 Rosa chinensis HOM05D004146 ORTHO05D004843 1.7e-154 550.1 453 65.8
TAR362G0580 Trochodendron aralioides HOM05D004146 ORTHO05D004843 1.7e-154 550.1 414 70.8
Solyc01g079210.3 Solanum lycopersicum HOM05D004146 ORTHO05D004843 4.8e-154 548.5 430 67.9
HPP92_024389 Vanilla planifolia HOM05D004146 ORTHO05D004843 8.2e-154 547.7 451 64.3
FAN23G2063 Fragaria x ananassa HOM05D004146 ORTHO05D004843 1.4e-153 547.0 453 65.3
SGA_v2.0_scaffold376G50305 Striga asiatica HOM05D004146 ORTHO05D004843 1.8e-153 546.6 457 65.4
MD01G1004200 Malus domestica HOM05D004146 ORTHO05D004843 2.4e-153 546.2 452 66.6
CANSAT80G2876 Cannabis sativa HOM05D004146 ORTHO05D004843 3.1e-153 545.8 455 66.6
FvH4_1g26770 Fragaria vesca HOM05D004146 ORTHO05D004843 3.1e-153 545.8 453 65.3
HanXRQChr06g0168071 Helianthus annuus HOM05D004146 ORTHO05D004843 3.1e-153 545.8 429 67.6
Migut.D00054 Erythranthe guttata HOM05D004146 ORTHO05D004843 5.3e-153 545.0 455 64.6
Peaxi162Scf00770g00128 Petunia axillaris HOM05D004146 ORTHO05D004843 1.3e-151 540.4 447 65.3
Nitab4.5_0000222g0120 Nicotiana tabacum HOM05D004146 ORTHO05D004843 3.8e-151 538.9 415 68.2
Duzib211G0108 Durio zibethinus HOM05D004146 ORTHO05D004843 1.1e-150 537.3 418 68.2
CDE10G1142 Ceratophyllum demersum HOM05D004146 ORTHO05D004843 1.9e-150 536.6 452 63.3
Thhalv10001452m.g Eutrema salsugineum HOM05D004146 ORTHO05D004843 1.9e-150 536.6 452 64.4
Lj5g0012537 Lotus japonicus HOM05D004146 ORTHO05D004843 1.9e-150 536.6 451 64.7
FAN28G1198 Fragaria x ananassa HOM05D004146 ORTHO05D004843 3.2e-150 535.8 466 63.5
Glyma.19G218500 Glycine max HOM05D004146 ORTHO05D004843 3.2e-150 535.8 451 65.6
Prupe.3G006800 Prunus persica HOM05D004146 ORTHO05D004843 3.2e-150 535.8 399 70.2
CARHR142600 Cardamine hirsuta HOM05D004146 ORTHO05D004843 4.2e-150 535.4 451 62.7
CsaV3_7G030200 Cucumis sativus L. HOM05D004146 ORTHO05D004843 4.2e-150 535.4 452 66.4
Duzib211G0650 Durio zibethinus HOM05D004146 ORTHO05D004843 4.2e-150 535.4 452 64.8
Glyma.03G221500 Glycine max HOM05D004146 ORTHO05D004843 5.5e-150 535.0 451 64.1
Lalb_Chr04g0260041 Lupinus albus HOM05D004146 ORTHO05D004843 5.5e-150 535.0 451 64.7
arahy.Tifrunner.gnm1.ann1.E9GQEB Arachis hypogaea HOM05D004146 ORTHO05D004843 7.2e-150 534.6 451 64.1
FAN19G1384 Fragaria x ananassa HOM05D004146 ORTHO05D004843 2.1e-149 533.1 463 63.5
arahy.Tifrunner.gnm1.ann1.BI9FA3 Arachis hypogaea HOM05D004146 ORTHO05D004843 2.7e-149 532.7 451 63.9
MELO3C015904.2 Cucumis melo HOM05D004146 ORTHO05D004843 6.1e-149 531.6 452 65.9
Lalb_Chr18g0046551 Lupinus albus HOM05D004146 ORTHO05D004843 1.4e-148 530.4 452 64.6
Zm00001eb235700 Zea mays HOM05D004146 ORTHO05D004843 1.4e-148 530.4 454 64.5
Lj1C336G0 Lonicera japonica HOM05D004146 ORTHO05D004843 5.1e-148 528.5 454 64.3
Psat3g019080 Pisum sativum HOM05D004146 ORTHO05D004843 5.1e-148 528.5 451 63.2
arahy.Tifrunner.gnm1.ann1.F4ZKGQ Arachis hypogaea HOM05D004146 ORTHO05D004843 6.7e-148 528.1 453 64.2
arahy.Tifrunner.gnm1.ann1.TWIF5Z Arachis hypogaea HOM05D004146 ORTHO05D004843 8.8e-148 527.7 453 64.0
AL4G46770 Arabidopsis lyrata HOM05D004146 ORTHO05D004843 2.6e-147 526.2 451 62.7
Os05g0540800 Oryza sativa ssp. japonica HOM05D004146 ORTHO05D004843 2.6e-147 526.2 453 63.8
BcaB06g29458 Brassica carinata HOM05D004146 ORTHO05D004843 3.3e-147 525.8 451 62.5
Sed0005540 Sechium edule HOM05D004146 ORTHO05D004843 3.3e-147 525.8 453 64.7
Aa31LG1G28520 Aethionema arabicum HOM05D004146 ORTHO05D004843 4.4e-147 525.4 451 63.0
TPR.G4037 Trifolium pratense HOM05D004146 ORTHO05D004843 4.4e-147 525.4 452 62.8
Sp4g29200 Schrenkiella parvula HOM05D004146 ORTHO05D004843 5.7e-147 525.0 451 62.5
Ca_09227_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 9.7e-147 524.2 466 62.2
Medtr7g109870 Medicago truncatula HOM05D004146 ORTHO05D004843 1.3e-146 523.9 456 62.9
MD15G1342700 Malus domestica HOM05D004146 ORTHO05D004843 2.2e-146 523.1 452 64.4
AT2G47210 Arabidopsis thaliana HOM05D004146 ORTHO05D004843 2.8e-146 522.7 451 62.5
C04p00700 Brassica napus HOM05D004146 ORTHO05D004843 1.1e-145 520.8 451 62.7
BolC4t21705H Brassica oleracea HOM05D004146 ORTHO05D004843 2.4e-145 519.6 451 62.5
BcaC02g12586 Brassica carinata HOM05D004146 ORTHO05D004843 5.3e-145 518.5 451 62.3
Lj1g0001654 Lotus japonicus HOM05D004146 ORTHO05D004843 1.2e-144 517.3 451 61.9
TPR.G38442 Trifolium pratense HOM05D004146 ORTHO05D004843 1.2e-144 517.3 451 61.9
BraSC79t46677Z Brassica rapa HOM05D004146 ORTHO05D004843 7.7e-144 514.6 451 61.2
BcaB02g08794 Brassica carinata HOM05D004146 ORTHO05D004843 3.8e-143 512.3 451 61.2
BraA05t19061Z Brassica rapa HOM05D004146 ORTHO05D004843 1.4e-142 510.4 477 59.1
Actinidia21373 Actinidia chinensis HOM05D004146 ORTHO05D004843 1.9e-142 510.0 454 63.2
C04p72630 Brassica napus HOM05D004146 ORTHO05D004843 3.2e-142 509.2 452 61.3
MBI19_g36749_MAGBIO Magnolia biondii HOM05D004146 ORTHO05D004843 3.2e-142 509.2 454 63.7
BcaC02g06965 Brassica carinata HOM05D004146 ORTHO05D004843 7.2e-142 508.1 452 61.1
THA.LOC104802140 Tarenaya hassleriana HOM05D004146 ORTHO05D004843 2.1e-141 506.5 466 60.9
Lalb_Chr06g0167021 Lupinus albus HOM05D004146 ORTHO05D004843 3.6e-141 505.8 451 62.3
Carub.0004s2994 Capsella rubella HOM05D004146 ORTHO05D004843 6.1e-141 505.0 451 60.3
Carub.0004s2995 Capsella rubella HOM05D004146 ORTHO05D004843 6.7e-140 501.5 451 60.3
ClCG09G004890 Citrullus lanatus HOM05D004146 ORTHO05D004843 1.1e-139 500.7 500 59.4
A04p34860 Brassica napus HOM05D004146 ORTHO05D004843 1.5e-139 500.4 477 57.9
Lsat_1_v5_gn_0_33621 Lactuca sativa HOM05D004146 ORTHO05D004843 3.7e-138 495.7 464 61.4
unitig_736.g22928 Utricularia gibba HOM05D004146 ORTHO05D004843 2.4e-129 466.5 460 56.7
Hma1.2p1_0965F.1_g242130 Hydrangea macrophylla HOM05D004146 ORTHO05D004843 3.1e-129 466.1 458 58.5
DCAR_018267 Daucus carota HOM05D004146 ORTHO05D004843 2.7e-128 463.0 417 59.7
Nitab4.5_0010752g0020 Nicotiana tabacum HOM05D004146 ORTHO05D004843 1.5e-126 457.2 372 65.9
A05p00620 Brassica napus HOM05D004146 ORTHO05D004843 4.2e-126 455.7 393 62.3
Medtr1g086590 Medicago truncatula HOM05D004146 ORTHO05D004843 1.2e-125 454.1 430 60.7
Hund09662 Selenicereus undatus HOM05D004146 ORTHO05D004843 1.4e-124 450.7 416 60.8
AUR62011755 Chenopodium quinoa HOM05D004146 ORTHO05D004843 7.5e-123 444.9 431 57.1
SEGI_29063 Sequoiadendron giganteum HOM05D004146 ORTHO05D004843 2.4e-121 439.9 470 53.2
Mapoly0165s0024 Marchantia polymorpha HOM05D004146 ORTHO05D004843 6.8e-116 421.8 477 51.2
Ca_10265_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 4.4e-115 419.1 511 50.5
Oeu044739.1 Olea europaea HOM05D004146 ORTHO05D004843 4.4e-115 419.1 398 59.0
AagrBONN_evm.TU.Sc2ySwM_228.1245 Anthoceros agrestis HOM05D004146 ORTHO05D004843 1.2e-112 411.0 500 47.6
TPR.G31750 Trifolium pratense HOM05D004146 ORTHO05D004843 7.8e-112 408.3 429 55.9
Haze_05083 Corylus avellana HOM05D004146 ORTHO05D004843 4.3e-110 402.5 479 51.8
Lj1A14G70 Lonicera japonica HOM05D004146 ORTHO05D004843 5.6e-110 402.1 343 61.8
Duzib138G1200 Durio zibethinus HOM05D004146 ORTHO05D004843 3.6e-109 399.4 452 53.5
SMO244G0096 Selaginella moellendorffii HOM05D004146 ORTHO05D004843 8.9e-108 394.8 458 51.3
Pp3c1_35180 Physcomitrium patens HOM05D004146 ORTHO05D004843 5.4e-105 385.6 487 45.8
CiPaw.07G120600 Carya illinoinensis HOM05D004146 ORTHO05D004843 4.6e-104 382.5 343 61.8
SHI33153 Sapria himalayana HOM05D004146 ORTHO05D004843 1.3e-90 337.8 242 69.4
BcaC02g09008 Brassica carinata HOM05D004146 ORTHO05D004843 1.1e-89 334.7 458 46.5
Psat6g160560 Pisum sativum HOM05D004146 ORTHO05D004843 4.7e-85 319.3 389 50.9
CBR_g3593 Chara braunii HOM05D004146 ORTHO05D004843 7.1e-81 305.4 554 38.8
BolC4t25516H Brassica oleracea HOM05D004146 ORTHO05D004843 1.5e-78 297.7 342 51.8
Mapoly0092s0082 Marchantia polymorpha HOM05D004146 ORTHO05D004843 4.0e-76 289.7 491 37.9
Pp3c2_4040 Physcomitrium patens HOM05D004146 ORTHO05D004843 2.0e-75 287.3 395 44.3
Dinv33143 Davidia involucrata HOM05D004146 ORTHO05D004843 3.8e-74 283.1 488 40.8
Psat6g160640 Pisum sativum HOM05D004146 ORTHO05D004843 4.3e-70 269.6 381 47.2
PRCOL_00004506 Prasinoderma coloniale HOM05D004146 ORTHO05D004843 7.9e-56 222.2 404 38.9
BolC4t28751H Brassica oleracea HOM05D004146 ORTHO05D004843 4.8e-53 213.0 248 55.2
SalBow3G0988 Salvia bowleyana HOM05D004146 ORTHO05D004843 1.8e-52 211.1 128 78.1
BolC4t25515H Brassica oleracea HOM05D004146 ORTHO05D004843 3.1e-52 210.3 174 61.5
C04p39500 Brassica napus HOM05D004146 ORTHO05D004843 1.6e-48 198.0 178 56.7
C04p39490 Brassica napus HOM05D004146 ORTHO05D004843 3.0e-47 193.7 179 56.4
BcaC02g09009 Brassica carinata HOM05D004146 ORTHO05D004843 2.8e-45 187.2 172 55.8
Lj1g0004326 Lotus japonicus HOM05D004146 ORTHO05D004843 8.2e-45 185.7 257 46.7
AagrBONN_evm.TU.Sc2ySwM_228.1331 Anthoceros agrestis HOM05D004146 ORTHO05D004843 3.4e-43 180.3 388 35.6
Cre03.g144907 Chlamydomonas reinhardtii HOM05D004146 ORTHO05D004843 3.8e-42 176.8 262 40.5
Actinidia20972 Actinidia chinensis HOM05D004146 ORTHO05D004843 3.7e-37 160.2 221 44.8
MCO05G453 Micromonas commoda HOM05D004146 ORTHO05D004843 3.2e-33 147.1 352 33.8
Oeu062253.1 Olea europaea HOM05D004146 ORTHO05D004843 2.6e-30 137.5 141 51.8
Psat6g160680 Pisum sativum HOM05D004146 ORTHO05D004843 8.2e-29 132.5 106 60.4
TPR.G18531 Trifolium pratense HOM05D004146 ORTHO05D004843 3.9e-23 113.6 91 60.4
Lj1A14G71 Lonicera japonica HOM05D004146 ORTHO05D004843 8.8e-23 112.5 135 54.8
BcaC02g12616 Brassica carinata HOM05D004146 ORTHO05D004843 3.7e-21 107.1 172 40.1
Lsat_1_v5_gn_2_7680 Lactuca sativa HOM05D004146 ORTHO05D004843 7.0e-20 102.8 146 51.4
Lsat_1_v5_gn_3_136441 Lactuca sativa HOM05D004146 ORTHO05D004843 2.6e-19 100.9 159 45.9
Lsat_1_v5_gn_8_147141 Lactuca sativa HOM05D004146 ORTHO05D004843 3.8e-18 97.1 141 48.2
GSVIVG01028163001 Vitis vinifera HOM05D004146 ORTHO05D004843 5.0e-18 96.7 83 62.7
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 2.1e-16 91.3 167 43.1
CAN.G111.15 Capsicum annuum HOM05D004146 ORTHO05D004843 8.0e-16 89.4 56 71.4
Cfa022451 Carpinus fangiana HOM05D004146 ORTHO05D004843 1.8e-15 88.2 273 25.3
RcHm_v2.0_Chr2g0114941 Rosa chinensis HOM05D004146 ORTHO05D004843 8.8e-15 85.9 99 47.5
HPP92_024388 Vanilla planifolia HOM05D002498 ORTHO05D008129 4.8e-13 80.1 54 70.4
C04p39510 Brassica napus HOM05D004146 ORTHO05D004843 1.0e-10 72.4 120 44.2
BolC4t28750H Brassica oleracea HOM05D004146 ORTHO05D004843 2.2e-10 71.2 200 30.0
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 1.2e-06 58.9 109 35.8
CSS0026841 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 9.8e-06 55.8 32 87.5


User provided reference genes

Program Settings