Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1332.4 692 100.0
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1324.3 692 99.4
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 0.0e+00 1204.5 688 89.0
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 0.0e+00 1196.8 688 88.1
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 0.0e+00 1191.4 685 88.0
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 0.0e+00 1190.6 685 88.5
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 0.0e+00 1189.5 685 88.5
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1186.4 688 88.1
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 0.0e+00 1183.3 671 90.2
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1181.4 685 88.0
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 0.0e+00 1180.6 685 87.9
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1179.1 687 88.2
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1174.5 687 87.3
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 0.0e+00 1172.9 690 87.0
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 0.0e+00 1171.0 685 87.2
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1170.6 685 86.9
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 0.0e+00 1169.1 685 86.7
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 0.0e+00 1167.5 685 86.7
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1167.5 685 86.6
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 0.0e+00 1166.8 688 86.0
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1165.6 688 86.5
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 0.0e+00 1165.6 684 87.3
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1164.8 686 86.7
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 0.0e+00 1161.0 685 86.4
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 0.0e+00 1160.6 688 86.5
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1154.4 692 85.8
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 0.0e+00 1154.0 688 85.9
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 0.0e+00 1154.0 684 86.8
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 0.0e+00 1153.7 685 86.7
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1153.7 685 85.4
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 0.0e+00 1152.9 685 85.4
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 0.0e+00 1150.6 688 84.7
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1150.2 685 86.1
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 0.0e+00 1149.4 692 84.7
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1147.5 685 85.1
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1147.1 687 85.3
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1147.1 687 85.3
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1147.1 687 85.3
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1146.3 685 85.0
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 0.0e+00 1144.4 691 84.4
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 0.0e+00 1143.6 692 84.7
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 0.0e+00 1142.9 690 85.1
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 0.0e+00 1142.5 688 84.9
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 0.0e+00 1138.3 696 84.5
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1135.9 692 84.5
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 0.0e+00 1135.6 689 83.3
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 0.0e+00 1135.2 692 82.9
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1134.0 689 83.2
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1134.0 689 83.2
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 0.0e+00 1132.9 708 82.9
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 0.0e+00 1131.7 687 84.3
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1131.7 688 82.8
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 0.0e+00 1131.7 712 82.3
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 0.0e+00 1131.3 689 83.3
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 0.0e+00 1131.3 691 83.5
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1130.5 685 85.5
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1130.2 689 83.2
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1129.8 689 82.9
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 0.0e+00 1129.4 689 82.9
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 0.0e+00 1129.0 689 82.9
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 0.0e+00 1127.5 690 83.0
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 0.0e+00 1126.3 689 82.6
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1125.2 688 82.7
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 0.0e+00 1124.4 692 83.5
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 0.0e+00 1123.6 688 82.1
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 0.0e+00 1122.8 688 82.1
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1122.5 694 84.1
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 0.0e+00 1122.5 687 83.3
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 0.0e+00 1121.7 685 84.7
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 0.0e+00 1121.7 712 81.3
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1120.9 684 83.9
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 0.0e+00 1117.4 685 83.2
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 0.0e+00 1114.4 684 82.2
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 0.0e+00 1112.8 685 82.3
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 0.0e+00 1109.4 692 80.6
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 0.0e+00 1109.0 701 80.6
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1107.8 688 81.5
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 0.0e+00 1105.1 686 81.9
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 0.0e+00 1104.4 691 81.9
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 0.0e+00 1100.9 688 81.0
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 0.0e+00 1099.0 685 82.3
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 0.0e+00 1097.8 667 83.1
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 0.0e+00 1097.0 684 81.9
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 0.0e+00 1094.0 703 80.7
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 0.0e+00 1092.0 685 82.0
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1091.3 686 82.1
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 0.0e+00 1090.1 730 76.8
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1089.7 688 80.7
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 0.0e+00 1086.6 759 75.2
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 0.0e+00 1086.2 690 81.6
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 0.0e+00 1084.7 687 79.9
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 1.9e-311 1072.0 664 81.8
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 9.5e-311 1069.7 731 76.3
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 4.4e-308 1060.8 700 78.3
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 2.7e-305 1051.6 730 75.3
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 3.5e-305 1051.2 688 77.8
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.2e-302 1042.7 666 80.5
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 4.1e-298 1027.7 712 74.3
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 2.9e-291 1005.0 736 70.9
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 2.7e-281 971.8 631 80.8
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 7.8e-281 970.3 591 83.8
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 1.5e-279 966.1 689 71.0
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 1.5e-279 966.1 689 71.0
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 1.2e-278 963.0 611 80.4
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 4.0e-277 958.0 693 68.7
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 2.1e-270 935.6 584 81.0
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 1.3e-267 926.4 692 68.2
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 1.4e-266 922.9 690 68.0
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 2.4e-261 905.6 683 72.0
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 1.6e-257 892.9 553 82.5
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 2.7e-257 892.1 566 78.6
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 1.3e-256 889.8 590 77.6
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 3.9e-248 861.7 494 88.3
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 1.3e-243 846.7 482 89.8
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 8.7e-240 833.9 675 67.7
Os10g0488300 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 7.6e-228 794.3 680 58.5
Zm00001eb045280 Zea mays HOM05D004330 ORTHO05D005182 5.3e-221 771.5 675 58.1
CDE03G0141 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 1.4e-205 720.3 423 84.9
COL.COLO4_33595 Corchorus olitorius HOM05D004330 ORTHO05D005182 8.5e-195 684.5 447 81.4
SEGI_21093 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 1.9e-154 550.4 328 81.7
MCO11G104 Micromonas commoda HOM05D004330 ORTHO05D005182 6.8e-152 542.0 729 43.8
Cre08.g367200 Chlamydomonas reinhardtii HOM05D004330 ORTHO05D005182 3.2e-141 506.5 755 38.3
Migut.C00321 Erythranthe guttata HOM05D004330 ORTHO05D005182 2.0e-135 487.3 280 87.1
CSS0031487 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 4.6e-124 449.5 273 82.1
Haze_02247 Corylus avellana HOM05D004330 ORTHO05D005182 5.6e-122 442.6 269 83.6
CBR_g54934 Chara braunii HOM05D004330 ORTHO05D005182 4.2e-117 426.4 368 60.6
PRCOL_00005416 Prasinoderma coloniale HOM05D004330 ORTHO05D005182 3.9e-115 419.9 747 36.0
MBI16_g41537_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 2.4e-112 410.6 233 85.8
COL.COLO4_00397 Corchorus olitorius HOM05D004330 ORTHO05D005182 2.6e-111 407.1 237 85.7
SGA_v2.0_scaffold227G43197 Striga asiatica HOM05D004330 ORTHO05D005182 2.7e-108 397.1 253 78.7
HPP92_006235 Vanilla planifolia HOM05D004330 ORTHO05D005182 2.7e-108 397.1 261 81.6
CDE03G0281 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 2.3e-99 367.5 240 82.1
HPP92_006237 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.5e-77 295.0 182 78.6
SalBow1G7663 Salvia bowleyana HOM05D001091 ORTHO05D001020 4.7e-76 290.0 215 68.8
MBI13_g40628_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 1.3e-73 282.0 148 91.2
FvH4_6g22200 Fragaria vesca HOM05D004330 ORTHO05D005182 3.5e-71 273.9 192 78.6
Rhsim02G0174800 Rhododendron simsii HOM05D004330 ORTHO05D005182 8.0e-68 262.7 195 69.7
Actinidia09912 Actinidia chinensis HOM05D004330 ORTHO05D005182 1.2e-58 232.3 164 75.0
FAN14G0768 Fragaria x ananassa HOM05D004330 ORTHO05D005182 2.6e-58 231.1 192 69.3
CBR_g54936 Chara braunii HOM05D000019 ORTHO05D000353 3.7e-57 227.3 155 65.2
Oeu028617.1 Olea europaea HOM05D004330 ORTHO05D005182 1.1e-53 215.7 156 70.5
QL04p036179 Quercus lobata HOM05D004330 ORTHO05D037441 2.8e-52 211.1 180 67.8
QL09p008022 Quercus lobata HOM05D004330 ORTHO05D005182 3.4e-50 204.1 227 55.1
Cfa027264 Carpinus fangiana HOM05D004330 ORTHO05D005182 6.0e-47 193.4 488 27.9
Hund19535 Selenicereus undatus HOM05D004330 ORTHO05D005182 4.3e-45 187.2 113 85.8
Nitab4.5_0006062g0030 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.2e-44 185.7 119 79.8
HanXRQChr10g0312231 Helianthus annuus HOM05D004330 ORTHO05D005182 2.3e-43 181.4 104 85.6
Rhsim02G0174700 Rhododendron simsii HOM05D004330 ORTHO05D005182 2.3e-38 164.9 111 82.0
SEGI_19884 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 3.4e-34 151.0 111 68.5
C06p46260 Brassica napus HOM05D004330 ORTHO05D005182 5.4e-32 143.7 100 75.0
C06p46170 Brassica napus HOM05D004330 ORTHO05D005182 3.0e-30 137.9 100 73.0
C06p46210 Brassica napus HOM05D004330 ORTHO05D005182 3.0e-30 137.9 100 73.0
MBI13_g40627_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 5.8e-26 123.6 88 71.6
CARHR152420 Cardamine hirsuta HOM05D004330 ORTHO05D005182 1.1e-24 119.4 139 51.1
Haze_14000 Corylus avellana HOM05D004330 ORTHO05D005182 1.3e-22 112.5 69 81.2
CARHR064590 Cardamine hirsuta HOM05D004330 ORTHO05D005182 1.1e-21 109.4 108 55.6
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 1.9e-21 108.6 72 73.6
EL10Ac2g03252 Beta vulgaris HOM05D004330 ORTHO05D005182 1.3e-20 105.9 71 70.4
COL.COLO4_23503 Corchorus olitorius HOM05D004330 ORTHO05D005182 4.8e-20 104.0 69 75.4
HPP92_006236 Vanilla planifolia HOM05D004330 ORTHO05D005182 6.2e-20 103.6 57 87.7
Zm00001eb378040 Zea mays HOM05D004330 ORTHO05D000629 1.4e-19 102.4 59 84.7
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 1.8e-19 102.1 77 68.8
EL10Ac2g03375 Beta vulgaris HOM05D015602 ORTHO05D006373 4.2e-16 90.9 65 72.3
HPP92_006372 Vanilla planifolia HOM05D004330 ORTHO05D005182 9.3e-16 89.7 102 52.0
SGA_v2.0_scaffold123G33447 Striga asiatica HOM05D004330 ORTHO05D005182 4.0e-11 74.3 78 48.7
QL05p049490 Quercus lobata HOM05D000205 ORTHO05D037441 4.5e-10 70.9 40 90.0
GSVIVG01018671001 Vitis vinifera HOM05D004330 ORTHO05D005182 2.2e-09 68.6 46 71.7
COL.COLO4_37492 Corchorus olitorius HOM05D004330 ORTHO05D005182 2.7e-07 61.6 38 73.7
Haze_02240 Corylus avellana HOM05D000586 ORTHO05D001010 4.6e-07 60.8 38 76.3


User provided reference genes

Program Settings