Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO700G0130 Papaver somniferum HOM05D005334 ORTHO05D006560 1.2e-203 713.0 362 100.0
PSO761G0425 Papaver somniferum HOM05D005334 ORTHO05D006560 9.0e-196 686.8 363 95.6
PSO832G1169 Papaver somniferum HOM05D005334 ORTHO05D006560 1.1e-193 679.9 362 95.9
PSO013G0112 Papaver somniferum HOM05D005334 ORTHO05D006560 1.1e-172 610.1 317 96.5
TAR625G0036 Trochodendron aralioides HOM05D005334 ORTHO05D006560 9.4e-153 543.9 347 77.5
Thecc.10G018300 Theobroma cacao HOM05D005334 ORTHO05D006560 3.0e-151 538.9 365 75.6
Cfa006855 Carpinus fangiana HOM05D005334 ORTHO05D006560 2.0e-150 536.2 365 74.5
Actinidia05483 Actinidia chinensis HOM05D005334 ORTHO05D006560 7.5e-150 534.3 365 74.2
Hma1.2p1_0964F.1_g242010 Hydrangea macrophylla HOM05D005334 ORTHO05D006560 1.7e-149 533.1 381 70.9
GSVIVG01003946001 Vitis vinifera HOM05D005334 ORTHO05D006560 3.7e-149 531.9 362 74.0
Nn5g29815 Nelumbo nucifera HOM05D005334 ORTHO05D006560 1.4e-148 530.0 365 73.2
Rhsim04G0113300 Rhododendron simsii HOM05D005334 ORTHO05D006560 1.4e-148 530.0 365 73.7
Gohir.D12G076300 Gossypium hirsutum HOM05D005334 ORTHO05D006560 1.8e-148 529.6 363 74.1
CANSAT01G0836 Cannabis sativa HOM05D005334 ORTHO05D006560 9.1e-148 527.3 365 73.7
Duzib128G0185 Durio zibethinus HOM05D005334 ORTHO05D006560 9.1e-148 527.3 374 73.3
Gorai.008G084700 Gossypium raimondii HOM05D005334 ORTHO05D006560 1.2e-147 526.9 363 74.1
Haze_03908 Corylus avellana HOM05D005334 ORTHO05D006560 1.6e-147 526.6 358 74.6
Potri.010G189500 Populus trichocarpa HOM05D005334 ORTHO05D006560 2.7e-147 525.8 365 72.3
FAN26G1496 Fragaria x ananassa HOM05D005334 ORTHO05D006560 4.5e-147 525.0 364 73.9
RcHm_v2.0_Chr6g0270401 Rosa chinensis HOM05D005334 ORTHO05D006560 1.0e-146 523.9 364 73.9
FvH4_1g19290 Fragaria vesca HOM05D005334 ORTHO05D006560 5.0e-146 521.5 364 74.2
MD01G1042400 Malus domestica HOM05D005334 ORTHO05D006560 5.0e-146 521.5 363 72.7
RcHm_v2.0_Chr6g0270301 Rosa chinensis HOM05D005334 ORTHO05D006560 5.0e-146 521.5 364 73.6
vmacro09003 Vaccinium macrocarpon HOM05D005334 ORTHO05D006560 6.5e-146 521.2 365 72.9
CsaV3_6G044840 Cucumis sativus L. HOM05D005334 ORTHO05D006560 2.5e-145 519.2 364 72.5
QL06p036434 Quercus lobata HOM05D005334 ORTHO05D006560 7.2e-145 517.7 364 71.7
FvH4_7g07230 Fragaria vesca HOM05D005334 ORTHO05D006560 3.6e-144 515.4 364 72.3
FAN23G0357 Fragaria x ananassa HOM05D005334 ORTHO05D006560 3.6e-144 515.4 364 73.4
FAN23G0783 Fragaria x ananassa HOM05D005334 ORTHO05D006560 3.6e-144 515.4 364 73.4
Ciclev10008278m.g Citrus clementina HOM05D005334 ORTHO05D006560 4.7e-144 515.0 365 72.1
MELO3C007703.2 Cucumis melo HOM05D005334 ORTHO05D006560 4.7e-144 515.0 368 72.0
Prupe.1G076500 Prunus persica HOM05D005334 ORTHO05D006560 4.7e-144 515.0 364 71.7
Aqoxy6G01573 Aquilegia oxysepala HOM05D005334 ORTHO05D006560 6.1e-144 514.6 357 74.5
ClCG01G018260 Citrullus lanatus HOM05D005334 ORTHO05D006560 8.0e-144 514.2 364 72.3
Sed0026061 Sechium edule HOM05D005334 ORTHO05D006560 3.0e-143 512.3 367 71.7
TWI34G1275 Tripterygium wilfordii HOM05D005334 ORTHO05D006560 5.2e-143 511.5 364 72.3
Eucgr.A00094 Eucalyptus grandis HOM05D005334 ORTHO05D006560 5.7e-142 508.1 365 70.7
Peaxi162Scf00085g00115 Petunia axillaris HOM05D005334 ORTHO05D006560 1.3e-141 506.9 363 69.1
Sabra10G0146100 Salix brachista HOM05D005334 ORTHO05D006560 1.7e-141 506.5 386 67.6
Lj3g0001207 Lotus japonicus HOM05D005334 ORTHO05D006560 4.8e-141 505.0 365 71.2
CiPaw.07G045200 Carya illinoinensis HOM05D005334 ORTHO05D006560 8.3e-141 504.2 365 69.9
Ciclev10008715m.g Citrus clementina HOM05D005334 ORTHO05D006560 3.1e-140 502.3 368 70.7
Manes.10G013400 Manihot esculenta HOM05D005334 ORTHO05D006560 9.1e-140 500.7 365 70.7
CAN.G1813.2 Capsicum annuum HOM05D005334 ORTHO05D006560 4.5e-139 498.4 363 68.3
arahy.Tifrunner.gnm1.ann1.DY9T0P Arachis hypogaea HOM05D005334 ORTHO05D006560 7.7e-139 497.7 365 71.0
CiPaw.07G045000 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.7e-138 496.5 366 69.7
Solyc11g010950.2 Solanum lycopersicum HOM05D005334 ORTHO05D006560 1.7e-138 496.5 362 67.4
Sopen11g005690 Solanum pennellii HOM05D005334 ORTHO05D006560 1.7e-138 496.5 363 67.5
arahy.Tifrunner.gnm1.ann1.D5QNLH Arachis hypogaea HOM05D005334 ORTHO05D006560 5.0e-138 495.0 365 70.7
Ca_14799_v3 Cicer arietinum L. HOM05D005334 ORTHO05D006560 5.0e-138 495.0 366 69.4
Nitab4.5_0000402g0140 Nicotiana tabacum HOM05D005334 ORTHO05D006560 5.0e-138 495.0 363 66.9
ECA233G4415 Erigeron canadensis HOM05D005334 ORTHO05D006560 1.1e-137 493.8 363 68.9
Medtr8g007340 Medicago truncatula HOM05D005334 ORTHO05D006560 1.1e-137 493.8 365 69.0
PGSC0003DMG400016186 Solanum tuberosum HOM05D005334 ORTHO05D006560 2.5e-137 492.7 363 67.2
CSS0002721 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 7.2e-137 491.1 338 72.2
Psat4g223080 Pisum sativum HOM05D005334 ORTHO05D006560 1.6e-136 490.0 366 69.4
Sc03g0000510 Simmondsia chinensis HOM05D005334 ORTHO05D006560 1.6e-136 490.0 365 69.0
SGA_v2.0_scaffold45G17221 Striga asiatica HOM05D005334 ORTHO05D006560 2.3e-135 486.1 364 68.4
Phvul.010G046100 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 8.8e-135 484.2 365 68.2
Glyma.13G008300 Glycine max HOM05D005334 ORTHO05D006560 3.4e-134 482.3 365 68.5
Phvul.010G045900 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 5.7e-134 481.5 365 68.2
PGR031G2068 Punica granatum HOM05D005334 ORTHO05D006560 5.7e-134 481.5 369 65.6
Cc07_g13790 Coffea canephora HOM05D005334 ORTHO05D006560 7.5e-134 481.1 366 68.0
SalBow5G3116 Salvia bowleyana HOM05D005334 ORTHO05D006560 1.3e-133 480.3 359 68.2
MSTRG.3723 Avicennia marina HOM05D005334 ORTHO05D006560 3.7e-133 478.8 365 67.1
SalBow5G4670 Salvia bowleyana HOM05D005334 ORTHO05D006560 3.7e-133 478.8 359 68.0
HanXRQChr08g0226671 Helianthus annuus HOM05D005334 ORTHO05D006560 1.8e-132 476.5 364 67.0
VMungo0331G1245 Vigna mungo HOM05D005334 ORTHO05D006560 4.1e-132 475.3 365 66.8
Lalb_Chr12g0210501 Lupinus albus HOM05D005334 ORTHO05D006560 2.7e-131 472.6 365 67.4
FAN19G2596 Fragaria x ananassa HOM05D005334 ORTHO05D006560 2.5e-129 466.1 364 69.0
COL.COLO4_25710 Corchorus olitorius HOM05D005334 ORTHO05D006560 1.6e-128 463.4 308 75.0
Os06g0639600 Oryza sativa ssp. japonica HOM05D005334 ORTHO05D006560 1.8e-127 459.9 366 64.8
AUR62003692 Chenopodium quinoa HOM05D005334 ORTHO05D006560 4.0e-127 458.8 368 64.1
AUR62018003 Chenopodium quinoa HOM05D005334 ORTHO05D006560 3.4e-126 455.7 391 60.6
Migut.K00814 Erythranthe guttata HOM05D005334 ORTHO05D006560 1.6e-123 446.8 364 65.4
Cpa.g.sc19.179 Carica papaya HOM05D005334 ORTHO05D006560 2.7e-123 446.0 365 66.0
CiPaw.07G049700 Carya illinoinensis HOM05D005334 ORTHO05D006560 2.7e-123 446.0 362 64.4
Lj2C525G9 Lonicera japonica HOM05D005334 ORTHO05D006560 3.5e-123 445.7 366 65.0
CARHR085780 Cardamine hirsuta HOM05D005334 ORTHO05D006560 5.0e-122 441.8 362 64.1
Thhalv10021017m.g Eutrema salsugineum HOM05D005334 ORTHO05D006560 6.6e-122 441.4 362 63.5
Carub.0003s1053 Capsella rubella HOM05D005334 ORTHO05D006560 1.1e-121 440.7 358 63.7
Sp3g09500 Schrenkiella parvula HOM05D005334 ORTHO05D006560 3.6e-120 435.6 362 63.3
THA.LOC104816551 Tarenaya hassleriana HOM05D005334 ORTHO05D006560 3.6e-120 435.6 362 62.7
Zm00001eb387250 Zea mays HOM05D005334 ORTHO05D006560 1.8e-119 433.3 378 61.4
BcaC05g29390 Brassica carinata HOM05D005334 ORTHO05D006560 2.3e-119 433.0 363 62.8
CiPaw.07G044700 Carya illinoinensis HOM05D005334 ORTHO05D006560 8.9e-119 431.0 368 61.7
Aa31LG3G4530 Aethionema arabicum HOM05D005334 ORTHO05D006560 1.5e-118 430.3 362 63.0
CDE04G2384 Ceratophyllum demersum HOM05D005334 ORTHO05D006560 2.0e-118 429.9 366 61.5
AT3G11220 Arabidopsis thaliana HOM05D005334 ORTHO05D006560 2.6e-118 429.5 363 63.1
A05p38080 Brassica napus HOM05D005334 ORTHO05D006560 2.6e-118 429.5 364 62.6
C05p56870 Brassica napus HOM05D005334 ORTHO05D006560 4.4e-118 428.7 364 62.6
BraA05t22600Z Brassica rapa HOM05D005334 ORTHO05D006560 2.2e-117 426.4 364 62.1
Atru.chr12.1050 Acer truncatum HOM05D005334 ORTHO05D006560 4.9e-117 425.2 334 67.1
MBI10_g34777_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 2.4e-116 422.9 340 65.0
AL3G22740 Arabidopsis lyrata HOM05D005334 ORTHO05D006560 4.1e-116 422.2 370 61.4
BolC5t34351H Brassica oleracea HOM05D005334 ORTHO05D006560 2.7e-115 419.5 389 58.6
Dinv36960 Davidia involucrata HOM05D005334 ORTHO05D006560 1.1e-111 407.5 278 73.7
Lsat_1_v5_gn_6_15620 Lactuca sativa HOM05D005334 ORTHO05D006560 2.6e-110 402.9 362 61.0
Ah.02g123390 Amaranthus hybridus HOM05D005334 ORTHO05D006560 5.8e-110 401.7 362 59.4
Glyma.03G108600 Glycine max HOM05D005334 ORTHO05D006560 1.1e-108 397.5 303 67.3
unitig_0.g2648 Utricularia gibba HOM05D005334 ORTHO05D006560 1.9e-108 396.7 378 56.6
Hund14075 Selenicereus undatus HOM05D005334 ORTHO05D006560 2.3e-106 389.8 361 58.4
SHI03443 Sapria himalayana HOM05D005334 ORTHO05D006560 5.1e-106 388.7 359 58.5
SEGI_17743 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 8.6e-106 387.9 384 52.6
ATR1153G009 Amborella trichopoda HOM05D005334 ORTHO05D006560 5.8e-102 375.2 309 61.2
FAN03G2380 Fragaria x ananassa HOM05D005334 ORTHO05D006560 5.4e-100 368.6 377 57.0
Gohir.A12G078265 Gossypium hirsutum HOM05D005334 ORTHO05D006560 2.6e-94 349.7 243 73.7
Mapoly0006s0234 Marchantia polymorpha HOM05D005334 ORTHO05D006560 3.3e-89 332.8 369 47.4
Pp3c9_23940 Physcomitrium patens HOM05D005334 ORTHO05D006560 1.3e-85 320.9 365 47.7
AagrBONN_evm.TU.Sc2ySwM_117.1770 Anthoceros agrestis HOM05D005334 ORTHO05D006560 1.6e-83 313.9 417 46.0
Thecc.09G278800 Theobroma cacao HOM05D005334 ORTHO05D006560 3.4e-78 296.2 278 58.3
Dinv27014 Davidia involucrata HOM05D005334 ORTHO05D006560 3.8e-77 292.7 216 69.9
DCAR_003438 Daucus carota HOM05D005334 ORTHO05D006560 1.6e-72 277.3 306 51.0
Prupe.6G206700 Prunus persica HOM05D005334 ORTHO05D006560 8.4e-69 265.0 365 46.6
TPR.G5292 Trifolium pratense HOM05D005334 ORTHO05D006560 6.9e-63 245.4 173 71.1
Lj2g0000099 Lotus japonicus HOM05D005334 ORTHO05D006560 9.0e-63 245.0 167 73.7
Lsat_1_v5_gn_4_105120 Lactuca sativa HOM05D005334 ORTHO05D006560 7.6e-62 241.9 214 60.3
TPR.G11130 Trifolium pratense HOM05D005334 ORTHO05D006560 3.8e-61 239.6 198 63.1
Lj6g0009802 Lotus japonicus HOM05D005334 ORTHO05D006560 1.9e-60 237.3 199 63.3
BcaB06g25638 Brassica carinata HOM05D005334 ORTHO05D006560 6.9e-55 218.8 192 63.5
Lsat_1_v5_gn_8_12861 Lactuca sativa HOM05D005334 ORTHO05D006560 9.1e-55 218.4 161 70.8
CiPaw.07G044400 Carya illinoinensis HOM05D005334 ORTHO05D006560 7.4e-49 198.7 142 69.0
CSS0046374 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 1.2e-46 191.4 123 78.0
Lsat_1_v5_gn_5_29040 Lactuca sativa HOM05D005334 ORTHO05D006560 1.0e-45 188.3 223 48.9
CSS0016906 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 2.9e-45 186.8 123 76.4
RcHm_v2.0_Chr2g0110581 Rosa chinensis HOM05D005334 ORTHO05D006560 8.5e-45 185.3 307 40.4
SMO146G0066 Selaginella moellendorffii HOM05D005334 ORTHO05D006560 3.6e-43 179.9 249 43.4
Lsat_1_v5_gn_4_67481 Lactuca sativa HOM05D005334 ORTHO05D006560 3.3e-41 173.3 141 65.2
ATR0022G031 Amborella trichopoda HOM05D005334 ORTHO05D006560 3.7e-40 169.9 146 61.6
MD01G1042700 Malus domestica HOM05D005334 ORTHO05D006560 3.7e-40 169.9 165 58.2
SEGI_40300 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 3.2e-36 156.8 176 47.2
CSS0017464 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 2.7e-35 153.7 123 66.7
Lsat_1_v5_gn_1_79261 Lactuca sativa HOM05D005334 ORTHO05D006560 4.0e-34 149.8 141 59.6
HPP92_008022 Vanilla planifolia HOM05D005334 ORTHO05D006560 3.8e-29 133.3 114 61.4
MBI03_g45376_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 2.7e-27 127.1 87 70.1
CSS0026696 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 7.5e-25 119.0 72 77.8
HPP92_008021 Vanilla planifolia HOM05D005334 ORTHO05D006560 3.1e-23 113.6 79 72.2
MBI03_g46739_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 1.3e-21 108.2 77 64.9
Cre03.g196000 Chlamydomonas reinhardtii HOM05D005334 ORTHO05D006560 9.8e-17 92.0 207 28.5
CBR_g30786 Chara braunii HOM05D000019 ORTHO05D000002 6.3e-16 89.4 134 38.1
MCO12G220 Micromonas commoda HOM05D005334 ORTHO05D006560 3.8e-13 80.1 297 24.6


User provided reference genes

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