Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G7081 Papaver somniferum HOM05D003208 ORTHO05D004103 2.6e-220 768.5 395 100.0
PSO675G9385 Papaver somniferum HOM05D003208 ORTHO05D004103 2.6e-220 768.5 395 100.0
PSO675G0282 Papaver somniferum HOM05D003208 ORTHO05D004103 7.5e-220 766.9 395 99.7
PSO541G6125 Papaver somniferum HOM05D003208 ORTHO05D004103 8.6e-200 700.3 406 90.1
Aqoxy6G00734 Aquilegia oxysepala HOM05D003208 ORTHO05D004103 3.0e-104 382.9 394 52.8
Nn5g30027 Nelumbo nucifera HOM05D003208 ORTHO05D004103 3.3e-103 379.4 404 53.0
Dinv13221 Davidia involucrata HOM05D003208 ORTHO05D004103 4.8e-102 375.6 369 56.1
TAR628G1304 Trochodendron aralioides HOM05D003208 ORTHO05D004103 4.1e-101 372.5 381 55.9
Ciclev10024895m.g Citrus clementina HOM05D003208 ORTHO05D004103 1.0e-99 367.9 370 53.2
MD01G1034300 Malus domestica HOM05D003208 ORTHO05D004103 1.1e-98 364.4 358 55.3
MD15G1321600 Malus domestica HOM05D003208 ORTHO05D004103 5.5e-98 362.1 373 53.9
TWI74G0107 Tripterygium wilfordii HOM05D003208 ORTHO05D004103 7.2e-98 361.7 342 53.2
Hma1.2p1_0019F.1_g013690 Hydrangea macrophylla HOM05D003208 ORTHO05D004103 9.4e-98 361.3 397 53.4
Sabra07G0079200 Salix brachista HOM05D003208 ORTHO05D004103 2.1e-97 360.1 380 50.8
Atru.chr3.1361 Acer truncatum HOM05D003208 ORTHO05D004103 2.7e-97 359.8 355 52.1
Actinidia19997 Actinidia chinensis HOM05D003208 ORTHO05D004103 2.3e-96 356.7 393 52.7
Thecc.01G096900 Theobroma cacao HOM05D003208 ORTHO05D004103 6.8e-96 355.1 404 49.8
Rhsim10G0166900 Rhododendron simsii HOM05D003208 ORTHO05D004103 1.2e-95 354.4 409 50.4
Potri.007G096100 Populus trichocarpa HOM05D003208 ORTHO05D004103 1.5e-95 354.0 379 51.7
THA.LOC104807678 Tarenaya hassleriana HOM05D003208 ORTHO05D004103 1.7e-94 350.5 341 54.8
QL06p048297 Quercus lobata HOM05D003208 ORTHO05D004103 2.8e-94 349.7 382 50.8
Lj2C541T5 Lonicera japonica HOM05D003208 ORTHO05D004103 4.8e-94 349.0 416 50.7
TWI77G0296 Tripterygium wilfordii HOM05D003208 ORTHO05D004103 4.8e-94 349.0 343 51.0
Glyma.08G133700 Glycine max HOM05D003208 ORTHO05D004103 6.3e-94 348.6 347 55.6
COL.COLO4_27282 Corchorus olitorius HOM05D003208 ORTHO05D004103 8.3e-94 348.2 394 50.8
Glyma.05G176233 Glycine max HOM05D003208 ORTHO05D004103 1.1e-93 347.8 344 54.7
Glyma.11G241400 Glycine max HOM05D003208 ORTHO05D004103 1.8e-93 347.1 340 54.1
ECA246G0394 Erigeron canadensis HOM05D003208 ORTHO05D004103 3.1e-93 346.3 395 49.9
Cpa.g.sc55.83 Carica papaya HOM05D003208 ORTHO05D004103 9.1e-93 344.7 394 48.7
Gohir.D03G039900 Gossypium hirsutum HOM05D003208 ORTHO05D004103 1.2e-92 344.4 396 49.7
Gorai.003G041000 Gossypium raimondii HOM05D003208 ORTHO05D004103 1.2e-92 344.4 396 49.7
A04p16880 Brassica napus HOM05D003208 ORTHO05D004103 2.0e-92 343.6 366 51.9
BraA04t17321Z Brassica rapa HOM05D003208 ORTHO05D004103 2.0e-92 343.6 366 51.9
Gohir.A02G129100 Gossypium hirsutum HOM05D003208 ORTHO05D004103 2.7e-92 343.2 395 49.9
Phvul.002G261300 Phaseolus vulgaris HOM05D003208 ORTHO05D004103 3.5e-92 342.8 359 52.6
Prupe.6G191700 Prunus persica HOM05D003208 ORTHO05D004103 3.5e-92 342.8 397 49.9
MBI02_g27964_MAGBIO Magnolia biondii HOM05D003208 ORTHO05D004103 4.5e-92 342.4 361 53.7
Manes.12G131000 Manihot esculenta HOM05D003208 ORTHO05D004103 4.5e-92 342.4 381 49.3
Migut.H02342 Erythranthe guttata HOM05D003208 ORTHO05D004103 1.7e-91 340.5 380 49.2
A09p57600 Brassica napus HOM05D003208 ORTHO05D004103 2.3e-91 340.1 362 52.5
VMungo0251G3398 Vigna mungo HOM05D003208 ORTHO05D004103 5.0e-91 339.0 337 54.0
GSVIVG01003416001 Vitis vinifera HOM05D003208 ORTHO05D004103 5.0e-91 339.0 395 50.4
Cfa002613 Carpinus fangiana HOM05D003208 ORTHO05D004103 6.6e-91 338.6 399 48.1
BcaC07g41076 Brassica carinata HOM05D003208 ORTHO05D004103 8.6e-91 338.2 335 54.0
C08p40800 Brassica napus HOM05D003208 ORTHO05D004103 8.6e-91 338.2 335 54.0
BolC8t51644H Brassica oleracea HOM05D003208 ORTHO05D004103 8.6e-91 338.2 335 54.0
Ca_17757_v3 Cicer arietinum L. HOM05D003208 ORTHO05D004103 1.1e-90 337.8 352 51.7
MELO3C007741.2 Cucumis melo HOM05D003208 ORTHO05D004103 1.1e-90 337.8 381 50.9
CsaV3_6G045280 Cucumis sativus L. HOM05D003208 ORTHO05D004103 1.1e-90 337.8 385 49.6
BraA09t41152Z Brassica rapa HOM05D003208 ORTHO05D004103 1.9e-90 337.0 362 51.9
ClCG01G018610 Citrullus lanatus HOM05D003208 ORTHO05D004103 1.9e-90 337.0 415 48.2
Haze_24868 Corylus avellana HOM05D003208 ORTHO05D004103 2.5e-90 336.7 378 49.5
BolC4t26736H Brassica oleracea HOM05D003208 ORTHO05D004103 3.3e-90 336.3 366 51.4
Duzib147G1622 Durio zibethinus HOM05D003208 ORTHO05D004103 3.3e-90 336.3 393 48.3
RcHm_v2.0_Chr2g0112501 Rosa chinensis HOM05D003208 ORTHO05D004103 3.3e-90 336.3 395 50.4
BcaB08g35063 Brassica carinata HOM05D003208 ORTHO05D004103 5.5e-90 335.5 369 50.1
CiPaw.03G144800 Carya illinoinensis HOM05D003208 ORTHO05D004103 7.2e-90 335.1 344 52.9
Eucgr.H04746 Eucalyptus grandis HOM05D003208 ORTHO05D004103 7.2e-90 335.1 386 49.5
SGA_v2.0_scaffold111G31500 Striga asiatica HOM05D003208 ORTHO05D004103 7.2e-90 335.1 389 48.8
EL10Ac6g14824 Beta vulgaris HOM05D003208 ORTHO05D004103 1.2e-89 334.3 357 52.9
AUR62003252 Chenopodium quinoa HOM05D003208 ORTHO05D004103 2.1e-89 333.6 364 50.5
AUR62027218 Chenopodium quinoa HOM05D003208 ORTHO05D004103 2.8e-89 333.2 355 51.5
Oeu056635.1 Olea europaea HOM05D003208 ORTHO05D004103 2.8e-89 333.2 351 51.3
PGR102G0950 Punica granatum HOM05D003208 ORTHO05D004103 2.8e-89 333.2 398 48.0
Lj4g0011115 Lotus japonicus HOM05D003208 ORTHO05D004103 4.7e-89 332.4 346 53.8
Medtr8g089980 Medicago truncatula HOM05D003208 ORTHO05D004103 8.0e-89 331.6 363 50.4
Ah.02g126130 Amaranthus hybridus HOM05D003208 ORTHO05D004103 1.0e-88 331.3 376 48.7
Lalb_Chr13g0295911 Lupinus albus HOM05D003208 ORTHO05D004103 1.8e-88 330.5 338 52.7
Sp4g01430 Schrenkiella parvula HOM05D003208 ORTHO05D004103 2.3e-88 330.1 339 54.6
Cc07_g14750 Coffea canephora HOM05D003208 ORTHO05D004103 3.0e-88 329.7 385 49.1
CARHR113590 Cardamine hirsuta HOM05D003208 ORTHO05D004103 6.8e-88 328.6 348 50.9
FvH4_1g20370 Fragaria vesca HOM05D003208 ORTHO05D004103 6.8e-88 328.6 393 49.4
Carub.0004s0156 Capsella rubella HOM05D003208 ORTHO05D004103 2.0e-87 327.0 366 49.5
Phvul.001G253400 Phaseolus vulgaris HOM05D003208 ORTHO05D004103 2.6e-87 326.6 354 51.4
AT2G22400 Arabidopsis thaliana HOM05D003208 ORTHO05D004103 4.4e-87 325.9 378 50.3
VMungo1383G1326 Vigna mungo HOM05D003208 ORTHO05D004103 7.5e-87 325.1 355 51.0
Sed0002614 Sechium edule HOM05D003208 ORTHO05D004103 1.3e-86 324.3 402 47.3
Solyc11g010110.3 Solanum lycopersicum HOM05D003208 ORTHO05D004103 1.7e-86 323.9 438 44.7
Sopen11g004910 Solanum pennellii HOM05D003208 ORTHO05D004103 1.7e-86 323.9 438 44.5
BcaC02g08664 Brassica carinata HOM05D003208 ORTHO05D004103 2.2e-86 323.6 357 50.7
FAN28G0091 Fragaria x ananassa HOM05D003208 ORTHO05D004103 2.2e-86 323.6 410 47.8
SalBow3G0841 Salvia bowleyana HOM05D003208 ORTHO05D004103 2.2e-86 323.6 367 49.9
SalBow3G1582 Salvia bowleyana HOM05D003208 ORTHO05D004103 2.2e-86 323.6 367 49.9
CANSAT01G1547 Cannabis sativa HOM05D003208 ORTHO05D004103 2.8e-86 323.2 432 45.6
Aa31LG7G14430 Aethionema arabicum HOM05D003208 ORTHO05D004103 1.1e-85 321.2 371 49.3
PGSC0003DMG400016157 Solanum tuberosum HOM05D003208 ORTHO05D004103 1.1e-85 321.2 442 44.6
Sed0018597 Sechium edule HOM05D003208 ORTHO05D004103 1.8e-85 320.5 401 46.9
arahy.Tifrunner.gnm1.ann1.56KYQ9 Arachis hypogaea HOM05D003208 ORTHO05D004103 2.4e-85 320.1 378 50.8
CAN.G905.28 Capsicum annuum HOM05D003208 ORTHO05D004103 5.4e-85 318.9 438 43.4
HanXRQChr07g0196311 Helianthus annuus HOM05D003208 ORTHO05D004103 7.0e-85 318.5 418 45.9
Thhalv10000050m.g Eutrema salsugineum HOM05D003208 ORTHO05D004103 1.6e-84 317.4 333 51.1
Ca_16514_v3 Cicer arietinum L. HOM05D003208 ORTHO05D004103 3.5e-84 316.2 336 50.3
Lalb_Chr23g0277521 Lupinus albus HOM05D003208 ORTHO05D004103 3.5e-84 316.2 346 49.4
DCAR_003477 Daucus carota HOM05D003208 ORTHO05D004103 4.5e-84 315.8 373 48.0
FAN23G1395 Fragaria x ananassa HOM05D003208 ORTHO05D004103 5.9e-84 315.5 429 45.9
Lsat_1_v5_gn_5_45360 Lactuca sativa HOM05D003208 ORTHO05D004103 5.9e-84 315.5 364 48.9
Lalb_Chr07g0185301 Lupinus albus HOM05D003208 ORTHO05D004103 5.9e-84 315.5 338 51.5
Medtr3g086950 Medicago truncatula HOM05D003208 ORTHO05D004103 1.0e-83 314.7 340 50.0
TPR.G15995 Trifolium pratense HOM05D003208 ORTHO05D004103 1.0e-83 314.7 375 47.7
C04p51440 Brassica napus HOM05D003208 ORTHO05D004103 1.3e-83 314.3 368 48.9
FAN26G2141 Fragaria x ananassa HOM05D003208 ORTHO05D004103 2.9e-83 313.2 412 46.1
BcaC02g08709 Brassica carinata HOM05D003208 ORTHO05D004103 3.8e-83 312.8 361 49.3
Peaxi162Scf00381g00061 Petunia axillaris HOM05D003208 ORTHO05D004103 3.8e-83 312.8 382 45.8
Psat5g090760 Pisum sativum HOM05D003208 ORTHO05D004103 5.0e-83 312.4 371 46.1
MSTRG.2578 Avicennia marina HOM05D003208 ORTHO05D004103 6.6e-83 312.0 398 45.5
Psat7g057040 Pisum sativum HOM05D003208 ORTHO05D004103 1.1e-82 311.2 362 48.6
Nitab4.5_0012684g0010 Nicotiana tabacum HOM05D003208 ORTHO05D004103 4.3e-82 309.3 352 47.4
CDE10G0727 Ceratophyllum demersum HOM05D003208 ORTHO05D004103 7.3e-82 308.5 352 50.3
Lj6g0024442 Lotus japonicus HOM05D003208 ORTHO05D004103 7.3e-82 308.5 358 47.8
ATR0684G089 Amborella trichopoda HOM05D003208 ORTHO05D004103 2.1e-81 307.0 367 49.6
vmacro12976 Vaccinium macrocarpon HOM05D003208 ORTHO05D004103 4.7e-81 305.8 458 43.7
arahy.Tifrunner.gnm1.ann1.G6ARYH Arachis hypogaea HOM05D003208 ORTHO05D004103 6.1e-81 305.4 389 48.8
HPP92_013110 Vanilla planifolia HOM05D003208 ORTHO05D004103 2.3e-80 303.5 335 51.6
Solyc05g051520.3 Solanum lycopersicum HOM05D003208 ORTHO05D004103 5.2e-80 302.4 358 45.8
Aa31LG6G15240 Aethionema arabicum HOM05D003208 ORTHO05D004103 1.5e-79 300.8 336 48.8
Nitab4.5_0002604g0040 Nicotiana tabacum HOM05D003208 ORTHO05D004103 1.5e-79 300.8 415 43.6
Nitab4.5_0000128g0250 Nicotiana tabacum HOM05D003208 ORTHO05D004103 2.0e-79 300.4 361 45.4
Eucgr.I00532 Eucalyptus grandis HOM05D003208 ORTHO05D004103 4.4e-79 299.3 335 48.4
TPR.G6241 Trifolium pratense HOM05D003208 ORTHO05D004103 4.4e-79 299.3 359 48.2
Nitab4.5_0000241g0270 Nicotiana tabacum HOM05D003208 ORTHO05D004103 5.8e-79 298.9 374 46.0
Sopen05g029940 Solanum pennellii HOM05D003208 ORTHO05D004103 9.8e-79 298.1 347 46.7
Zm00001eb315780 Zea mays HOM05D003208 ORTHO05D004103 9.8e-79 298.1 379 47.0
Os09g0471900 Oryza sativa ssp. japonica HOM05D003208 ORTHO05D004103 2.2e-78 297.0 388 45.6
Carub.0007s0196 Capsella rubella HOM05D003208 ORTHO05D004103 3.7e-78 296.2 356 48.9
PSO675G3474 Papaver somniferum HOM05D003208 ORTHO05D004103 4.9e-78 295.8 149 100.0
unitig_699.g19581 Utricularia gibba HOM05D003208 ORTHO05D004103 4.9e-78 295.8 414 43.7
AL4G11900 Arabidopsis lyrata HOM05D003208 ORTHO05D004103 6.4e-78 295.4 352 47.2
Thhalv10024482m.g Eutrema salsugineum HOM05D003208 ORTHO05D004103 1.1e-77 294.7 355 49.0
FAN19G0293 Fragaria x ananassa HOM05D003208 ORTHO05D004103 1.9e-77 293.9 357 49.0
Thhalv10000064m.g Eutrema salsugineum HOM05D003208 ORTHO05D004103 2.4e-77 293.5 342 47.4
AL7G12310 Arabidopsis lyrata HOM05D003208 ORTHO05D004103 3.2e-77 293.1 363 48.2
CAN.G151.12 Capsicum annuum HOM05D003208 ORTHO05D004103 1.6e-76 290.8 343 46.9
CARHR246680 Cardamine hirsuta HOM05D003208 ORTHO05D004103 2.0e-76 290.4 356 47.5
Peaxi162Scf00044g00112 Petunia axillaris HOM05D003208 ORTHO05D004103 2.7e-76 290.0 363 43.3
A01p00920 Brassica napus HOM05D003208 ORTHO05D004103 7.8e-76 288.5 346 46.0
AT4G40000 Arabidopsis thaliana HOM05D003208 ORTHO05D004103 1.3e-75 287.7 363 47.7
Sp7g35870 Schrenkiella parvula HOM05D003208 ORTHO05D004103 7.3e-74 282.0 339 47.5
BcaNung00929 Brassica carinata HOM05D003208 ORTHO05D004103 8.0e-73 278.5 342 45.6
BcaNung05188 Brassica carinata HOM05D003208 ORTHO05D004103 1.1e-72 278.1 343 45.5
BraA01t00090Z Brassica rapa HOM05D003208 ORTHO05D004103 4.0e-72 276.2 342 44.7
C01p01050 Brassica napus HOM05D003208 ORTHO05D004103 5.2e-72 275.8 342 45.0
BolC1t00102H Brassica oleracea HOM05D003208 ORTHO05D004103 5.2e-72 275.8 342 45.0
Os08g0484400 Oryza sativa ssp. japonica HOM05D003208 ORTHO05D004103 6.4e-70 268.9 345 46.1
PGR004G2195 Punica granatum HOM05D003208 ORTHO05D004103 2.7e-68 263.5 354 43.2
BcaC02g08665 Brassica carinata HOM05D003208 ORTHO05D004103 1.4e-64 251.1 314 47.1
Psat3g056560 Pisum sativum HOM05D003208 ORTHO05D004103 3.1e-64 250.0 223 53.8
SMO165G0121 Selaginella moellendorffii HOM05D003208 ORTHO05D004103 5.8e-63 245.7 373 39.7
HPP92_013098 Vanilla planifolia HOM05D003208 ORTHO05D004103 4.1e-61 239.6 260 53.5
Pp3c15_5210 Physcomitrium patens HOM05D003208 ORTHO05D004103 5.4e-61 239.2 368 36.7
Pp3c15_5220 Physcomitrium patens HOM05D003208 ORTHO05D004103 5.4e-61 239.2 368 36.7
Mapoly0022s0008 Marchantia polymorpha HOM05D003208 ORTHO05D004103 4.3e-58 229.6 403 38.0
AagrBONN_evm.TU.Sc2ySwM_368.2854 Anthoceros agrestis HOM05D003208 ORTHO05D004103 1.4e-56 224.6 414 36.5
CBR_g12754 Chara braunii HOM05D000019 ORTHO05D000048 5.6e-50 202.6 397 33.8
Glyma.18G015632 Glycine max HOM05D003208 ORTHO05D004103 3.1e-48 196.8 187 57.2
Sc03g0000100 Simmondsia chinensis HOM05D003208 ORTHO05D004103 2.7e-44 183.7 225 48.9
MCO16G190 Micromonas commoda HOM05D003208 ORTHO05D004103 1.0e-35 155.2 354 31.9
PRCOL_00004940 Prasinoderma coloniale HOM05D003208 ORTHO05D004103 5.8e-31 139.4 341 27.9
Zm00001eb033550 Zea mays HOM05D003208 ORTHO05D004103 1.3e-30 138.3 226 38.5
SEGI_08254 Sequoiadendron giganteum HOM05D003208 ORTHO05D004103 3.0e-27 127.1 296 32.8
SEGI_39110 Sequoiadendron giganteum HOM05D003208 ORTHO05D004103 2.1e-25 120.9 174 40.8
Cre03.g179860 Chlamydomonas reinhardtii HOM05D003208 ORTHO05D004103 5.5e-21 106.3 305 26.2
Cfa024691 Carpinus fangiana HOM05D003208 ORTHO05D005480 2.4e-16 90.9 400 25.8
Ca_07084_v3 Cicer arietinum L. HOM05D000036 ORTHO05D015518 1.5e-15 88.2 65 61.5
PSO675G5792 Papaver somniferum HOM05D003208 ORTHO05D004103 3.8e-14 83.6 55 76.4
BcaNung00925 Brassica carinata HOM05D003208 ORTHO05D004103 3.6e-12 77.0 280 30.0
Psat4g135880 Pisum sativum HOM05D001082 ORTHO05D005120 4.6e-12 76.6 161 36.0
Psat7g145480 Pisum sativum HOM05D003208 ORTHO05D004103 8.2e-09 65.9 64 50.0
BcaNung05191 Brassica carinata HOM05D003208 ORTHO05D015518 1.8e-08 64.7 35 82.9
Actinidia06543 Actinidia chinensis HOM05D003208 ORTHO05D004103 3.1e-08 63.9 47 66.0
Psat4g135800 Pisum sativum HOM05D003208 ORTHO05D015518 3.4e-07 60.5 66 50.0
Ca_04837_v3 Cicer arietinum L. HOM05D003208 ORTHO05D015518 1.0e-06 58.9 162 34.0
C03p62520 Brassica napus HOM05D002686 ORTHO05D042688 3.8e-06 57.0 36 69.4
BolC3t18509H Brassica oleracea HOM05D003208 ORTHO05D042688 3.8e-06 57.0 36 69.4
Ca_27302_v3 Cicer arietinum L. HOM05D003208 ORTHO05D015518 3.8e-06 57.0 119 37.0
Ca_30950_v3 Cicer arietinum L. HOM05D003208 ORTHO05D015518 3.8e-06 57.0 119 37.0


User provided reference genes

Program Settings