Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G5402 Papaver somniferum HOM05D004503 ORTHO05D005460 0.0e+00 1681.4 838 100.0
TAR629G1355 Trochodendron aralioides HOM05D004503 ORTHO05D005460 0.0e+00 1444.1 842 84.6
GSVIVG01020844001 Vitis vinifera HOM05D004503 ORTHO05D005460 0.0e+00 1443.7 839 84.3
Aqoxy1G01732 Aquilegia oxysepala HOM05D004503 ORTHO05D005460 0.0e+00 1417.9 839 82.0
Dinv07955 Davidia involucrata HOM05D004503 ORTHO05D005460 0.0e+00 1399.4 835 82.5
Lj1C677T5 Lonicera japonica HOM05D004503 ORTHO05D005460 0.0e+00 1388.6 839 80.5
Gorai.001G211500 Gossypium raimondii HOM05D004503 ORTHO05D005460 0.0e+00 1362.4 838 80.0
TWI14G0297 Tripterygium wilfordii HOM05D004503 ORTHO05D005460 0.0e+00 1358.6 849 79.0
CANSAT64G0633 Cannabis sativa HOM05D004503 ORTHO05D005460 0.0e+00 1357.4 842 79.2
CsaV3_4G031940 Cucumis sativus L. HOM05D004503 ORTHO05D005460 0.0e+00 1357.4 845 79.1
Gohir.A07G183000 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1357.0 845 79.8
Solyc07g056220.3 Solanum lycopersicum HOM05D004503 ORTHO05D005460 0.0e+00 1357.0 837 79.6
Sopen07g029580 Solanum pennellii HOM05D004503 ORTHO05D005460 0.0e+00 1356.3 837 79.5
Actinidia12541 Actinidia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1354.3 846 79.8
MELO3C026971.2 Cucumis melo HOM05D004503 ORTHO05D005460 0.0e+00 1354.3 845 78.7
Thecc.01G170000 Theobroma cacao HOM05D004503 ORTHO05D005460 0.0e+00 1354.0 845 79.6
Nn4g24335 Nelumbo nucifera HOM05D004503 ORTHO05D005460 0.0e+00 1353.2 835 79.4
Glyma.18G109800 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1350.5 838 79.4
vmacro08730 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 0.0e+00 1350.5 917 74.9
arahy.Tifrunner.gnm1.ann1.S01VYL Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1349.3 839 79.1
Medtr3g046640 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1349.3 844 79.1
Nitab4.5_0002251g0070 Nicotiana tabacum HOM05D004503 ORTHO05D005460 0.0e+00 1349.3 838 79.5
COL.COLO4_08894 Corchorus olitorius HOM05D004503 ORTHO05D005460 0.0e+00 1349.0 862 78.0
CiPaw.13G152400 Carya illinoinensis HOM05D004503 ORTHO05D005460 0.0e+00 1348.6 848 79.7
VMungo0647G0468 Vigna mungo HOM05D004503 ORTHO05D005460 0.0e+00 1348.2 838 79.2
PGR042G1526 Punica granatum HOM05D004503 ORTHO05D005460 0.0e+00 1347.4 847 79.2
arahy.Tifrunner.gnm1.ann1.96CX7H Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1347.0 839 79.0
Medtr0071s0030 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1346.6 844 79.0
Lalb_Chr07g0191281 Lupinus albus HOM05D004503 ORTHO05D005460 0.0e+00 1343.2 838 79.1
Peaxi162Scf00111g00222 Petunia axillaris HOM05D004503 ORTHO05D005460 0.0e+00 1343.2 901 74.4
Prupe.3G176600 Prunus persica HOM05D004503 ORTHO05D005460 0.0e+00 1342.0 845 78.6
Ca_14599_v3 Cicer arietinum L. HOM05D004503 ORTHO05D005460 0.0e+00 1340.9 844 78.6
Glyma.08G307900 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1340.9 838 78.4
MD17G1136200 Malus domestica HOM05D004503 ORTHO05D005460 0.0e+00 1340.9 837 79.0
Phvul.006G022400 Phaseolus vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1339.3 838 78.3
Sed0003027 Sechium edule HOM05D004503 ORTHO05D005460 0.0e+00 1338.6 845 78.1
Potri.005G204400 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1335.9 846 77.5
ClCG11G016490 Citrullus lanatus HOM05D004503 ORTHO05D005460 0.0e+00 1332.8 845 78.2
Psat5g185680 Pisum sativum HOM05D004503 ORTHO05D005460 0.0e+00 1330.1 844 78.0
Atru.chr6.2055 Acer truncatum HOM05D004503 ORTHO05D005460 0.0e+00 1328.9 843 78.1
EL10Ac1g01630 Beta vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1328.2 843 76.6
HPP92_024264 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1325.8 835 76.8
Lj6g0014906 Lotus japonicus HOM05D004503 ORTHO05D005460 0.0e+00 1325.1 842 77.8
CAN.G585.22 Capsicum annuum HOM05D004503 ORTHO05D005460 0.0e+00 1324.7 837 78.3
Sabra05G0155000 Salix brachista HOM05D004503 ORTHO05D005460 0.0e+00 1323.9 889 73.9
Migut.M00558 Erythranthe guttata HOM05D004503 ORTHO05D005460 0.0e+00 1323.1 843 77.1
Ciclev10030701m.g Citrus clementina HOM05D004503 ORTHO05D005460 0.0e+00 1321.2 842 77.2
THA.LOC104826541 Tarenaya hassleriana HOM05D004503 ORTHO05D005460 0.0e+00 1320.8 854 76.9
Potri.002G057800 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1319.7 846 77.4
MSTRG.6739 Avicennia marina HOM05D004503 ORTHO05D005460 0.0e+00 1318.9 843 77.7
Duzib138G1342 Durio zibethinus HOM05D004503 ORTHO05D005460 0.0e+00 1317.4 845 77.9
CSS0024997 Camellia sinensis var. sinensis HOM05D004503 ORTHO05D005460 0.0e+00 1315.4 857 77.4
HanXRQChr13g0387771 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1315.4 842 76.7
Sc09g0009430 Simmondsia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1315.4 843 76.4
QL01p017640 Quercus lobata HOM05D004503 ORTHO05D005460 0.0e+00 1314.7 903 73.8
SGA_v2.0_scaffold70G23615 Striga asiatica HOM05D004503 ORTHO05D005460 0.0e+00 1313.5 865 75.8
Lsat_1_v5_gn_8_31680 Lactuca sativa HOM05D004503 ORTHO05D005460 0.0e+00 1310.0 835 76.3
RcHm_v2.0_Chr2g0152001 Rosa chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1307.0 858 74.8
AUR62026613 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1305.4 842 76.1
ECA233G4498 Erigeron canadensis HOM05D004503 ORTHO05D005460 0.0e+00 1304.3 845 75.9
Cc05_g09730 Coffea canephora HOM05D004503 ORTHO05D005460 0.0e+00 1300.8 842 75.9
Manes.02G088300 Manihot esculenta HOM05D004503 ORTHO05D005460 0.0e+00 1299.6 850 77.1
FAN05G2445 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1298.9 858 74.7
Rhsim12G0009900 Rhododendron simsii HOM05D004503 ORTHO05D005460 0.0e+00 1298.9 865 75.7
AUR62034921 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1296.2 842 75.7
Cpa.g.sc648.4 Carica papaya HOM05D004503 ORTHO05D005460 0.0e+00 1294.6 851 76.1
FvH4_6g38590 Fragaria vesca HOM05D004503 ORTHO05D005460 0.0e+00 1293.9 858 74.6
FAN14G5858 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1290.8 858 74.5
Hund26670 Selenicereus undatus HOM05D004503 ORTHO05D005460 0.0e+00 1285.4 944 68.8
Aa31LG5G23690 Aethionema arabicum HOM05D004503 ORTHO05D005460 0.0e+00 1280.8 854 74.8
SEGI_01586 Sequoiadendron giganteum HOM05D004503 ORTHO05D005460 0.0e+00 1269.2 834 73.5
FAN02G3131 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1268.4 917 69.8
HPP92_024256 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1264.6 835 74.0
Sp4g20340 Schrenkiella parvula HOM05D004503 ORTHO05D005460 0.0e+00 1264.2 855 73.9
Thhalv10016232m.g Eutrema salsugineum HOM05D004503 ORTHO05D005460 0.0e+00 1262.3 855 74.0
ATR0772G123 Amborella trichopoda HOM05D004503 ORTHO05D005460 0.0e+00 1260.0 849 72.4
FAN09G1308 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1259.6 917 69.1
CARHR132590 Cardamine hirsuta HOM05D004503 ORTHO05D005460 0.0e+00 1258.4 855 73.0
BcaC01g05572 Brassica carinata HOM05D004503 ORTHO05D005460 0.0e+00 1257.3 855 73.5
C03p24750 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1257.3 855 73.5
BolC3t14864H Brassica oleracea HOM05D004503 ORTHO05D005460 0.0e+00 1257.3 855 73.5
A03p21010 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1256.1 855 73.3
BraA03t11340Z Brassica rapa HOM05D004503 ORTHO05D005460 0.0e+00 1256.1 855 73.3
AL4G35000 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 0.0e+00 1254.6 855 73.2
Carub.0004s1999 Capsella rubella HOM05D004503 ORTHO05D005460 0.0e+00 1253.0 855 72.9
AT2G38020 Arabidopsis thaliana HOM05D004503 ORTHO05D005460 0.0e+00 1250.7 854 73.1
Gohir.D07G189800 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1241.9 762 80.7
HanXRQChr13g0403751 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1241.5 785 76.6
PSO063G7036 Papaver somniferum HOM05D004503 ORTHO05D005460 0.0e+00 1234.2 621 98.1
Eucgr.A02017 Eucalyptus grandis HOM05D004503 ORTHO05D005460 0.0e+00 1172.1 727 78.8
Ah.05g168350 Amaranthus hybridus HOM05D004503 ORTHO05D005460 0.0e+00 1133.6 842 68.1
DCAR_013322 Daucus carota HOM05D004503 ORTHO05D005460 0.0e+00 1105.5 835 68.1
Mapoly0052s0038 Marchantia polymorpha HOM05D004503 ORTHO05D005460 5.7e-312 1073.5 836 61.4
Pp3c13_19740 Physcomitrium patens HOM05D004503 ORTHO05D005460 7.4e-310 1067.0 836 62.2
Cfa009838 Carpinus fangiana HOM05D004503 ORTHO05D005460 9.4e-305 1050.0 851 65.7
Os01g0666800 Oryza sativa ssp. japonica HOM05D004503 ORTHO05D005460 1.2e-304 1049.7 878 62.9
Haze_23205 Corylus avellana HOM05D004503 ORTHO05D005460 3.2e-297 1025.0 1141 52.3
MBI10_g21107_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 2.1e-296 1022.3 849 66.1
SMO358G0621 Selaginella moellendorffii HOM05D004503 ORTHO05D005460 6.5e-290 1000.7 835 58.7
BcaB01g03734 Brassica carinata HOM05D004503 ORTHO05D005460 4.5e-275 951.4 686 71.1
BcaNung06337 Brassica carinata HOM05D004503 ORTHO05D005460 3.6e-272 941.8 795 62.3
vmacro23147 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 2.9e-258 895.6 726 65.8
SHI12362 Sapria himalayana HOM05D004503 ORTHO05D005460 1.6e-227 793.5 602 65.9
BcaC01g05574 Brassica carinata HOM05D004503 ORTHO05D005460 1.6e-219 766.9 675 61.0
CDE04G0954 Ceratophyllum demersum HOM05D004503 ORTHO05D005460 9.3e-204 714.5 432 82.6
MBI10_g05864_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 2.3e-202 709.9 606 62.2
Nitab4.5_0027860g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 6.7e-202 708.4 471 73.0
Oeu020048.5 Olea europaea HOM05D004503 ORTHO05D005460 9.6e-201 704.5 461 78.3
PGSC0003DMG400017305 Solanum tuberosum HOM05D004503 ORTHO05D005460 5.9e-182 642.1 405 75.3
CBR_g46726 Chara braunii HOM05D004503 ORTHO05D005460 5.7e-177 625.5 848 41.7
Nitab4.5_0010124g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 8.0e-171 605.1 362 84.8
TPR.G25270 Trifolium pratense HOM05D004503 ORTHO05D005460 2.0e-166 590.5 337 86.6
PRCOL_00002554 Prasinoderma coloniale HOM05D004503 ORTHO05D005460 5.2e-162 575.9 855 38.8
Oeu010987.1 Olea europaea HOM05D004503 ORTHO05D005460 4.1e-151 539.7 356 72.2
Cfa025981 Carpinus fangiana HOM05D004503 ORTHO05D005460 3.6e-139 500.0 825 36.4
Cre03.g199311 Chlamydomonas reinhardtii HOM05D004503 ORTHO05D005460 1.2e-115 421.8 1001 30.4
TPR.G16790 Trifolium pratense HOM05D004503 ORTHO05D005460 1.2e-113 415.2 431 52.0
AL3G43330 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 1.3e-112 411.8 367 61.6
AagrBONN_evm.TU.Sc2ySwM_368.858 Anthoceros agrestis HOM05D004503 ORTHO05D005460 4.2e-111 406.8 327 58.4
BcaB02g09224 Brassica carinata HOM05D004503 ORTHO05D005460 1.2e-110 405.2 584 44.5
MBI10_g02225_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 8.4e-104 382.5 260 70.0
AagrBONN_evm.TU.Sc2ySwM_368.859 Anthoceros agrestis HOM05D004503 ORTHO05D005460 7.4e-100 369.4 329 55.3
AagrBONN_evm.TU.Sc2ySwM_117.438 Anthoceros agrestis HOM05D004503 ORTHO05D005460 1.8e-77 295.0 317 49.5
PGR042G2164 Punica granatum HOM05D004503 ORTHO05D005460 6.7e-77 293.1 165 85.5
Actinidia25072 Actinidia chinensis HOM05D004503 ORTHO05D005460 2.2e-75 288.1 238 62.6
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 2.9e-72 277.7 217 62.7
BcaB01g03733 Brassica carinata HOM05D004503 ORTHO05D005460 2.8e-67 261.2 158 75.9
TPR.G20801 Trifolium pratense HOM05D004503 ORTHO05D005460 7.2e-39 166.8 97 80.4
Lsat_1_v5_gn_8_146460 Lactuca sativa HOM05D004503 ORTHO05D005460 2.1e-38 165.2 134 61.9
Nitab4.5_0010753g0030 Nicotiana tabacum HOM05D004503 ORTHO05D005460 7.0e-34 150.2 116 62.1
Lsat_1_v5_gn_2_4101 Lactuca sativa HOM05D004503 ORTHO05D005460 4.5e-33 147.5 104 67.3
Lsat_1_v5_gn_9_81860 Lactuca sativa HOM05D004503 ORTHO05D005460 2.1e-30 138.7 93 75.3
Lsat_1_v5_gn_3_97321 Lactuca sativa HOM05D004503 ORTHO05D005460 3.6e-30 137.9 93 75.3
Lsat_1_v5_gn_1_120320 Lactuca sativa HOM05D004503 ORTHO05D005460 3.4e-28 131.3 91 71.4
FvH4_6g38010 Fragaria vesca HOM05D004503 ORTHO05D005460 3.7e-27 127.9 165 47.9
Lsat_1_v5_gn_5_109060 Lactuca sativa HOM05D004503 ORTHO05D005460 3.7e-27 127.9 99 68.7
MBI10_g02227_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 4.9e-27 127.5 125 61.6
Lsat_1_v5_gn_9_102961 Lactuca sativa HOM05D004503 ORTHO05D005460 1.1e-26 126.3 91 69.2
Lsat_1_v5_gn_9_107141 Lactuca sativa HOM05D004503 ORTHO05D005460 3.2e-26 124.8 85 70.6
Lsat_1_v5_gn_4_94880 Lactuca sativa HOM05D001336 ORTHO05D001211 1.6e-25 122.5 87 67.8
Lsat_1_v5_gn_6_107780 Lactuca sativa HOM05D004503 ORTHO05D003526 4.6e-25 120.9 112 60.7
Lsat_1_v5_gn_2_120 Lactuca sativa HOM05D003203 ORTHO05D003526 1.3e-24 119.4 124 54.0
TPR.G6024 Trifolium pratense HOM05D004503 ORTHO05D005460 2.3e-24 118.6 67 80.6
Lsat_1_v5_gn_0_13460 Lactuca sativa HOM05D003536 ORTHO05D004233 2.5e-23 115.2 100 63.0
Lsat_1_v5_gn_4_100901 Lactuca sativa HOM05D004503 ORTHO05D005460 7.3e-23 113.6 68 77.9
Lsat_1_v5_gn_1_93381 Lactuca sativa HOM05D003203 ORTHO05D003526 1.6e-22 112.5 103 61.2
Lsat_1_v5_gn_2_105761 Lactuca sativa HOM05D001000 ORTHO05D001896 1.6e-22 112.5 70 71.4
Lsat_1_v5_gn_2_36800 Lactuca sativa HOM05D004503 ORTHO05D005460 6.8e-21 107.1 61 80.3
Nitab4.5_0010753g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 8.9e-21 106.7 190 38.9
Lsat_1_v5_gn_8_98160 Lactuca sativa HOM05D004503 ORTHO05D005460 3.4e-20 104.8 96 59.4
Lsat_1_v5_gn_8_75300 Lactuca sativa HOM05D004503 ORTHO05D005460 1.2e-17 96.3 115 49.6
Lsat_1_v5_gn_8_13240 Lactuca sativa HOM05D004503 ORTHO05D005460 1.3e-16 92.8 82 62.2
Lsat_1_v5_gn_2_51260 Lactuca sativa HOM05D001336 ORTHO05D001211 1.5e-15 89.4 51 78.4
Lsat_1_v5_gn_8_84700 Lactuca sativa HOM05D004503 ORTHO05D005460 4.3e-15 87.8 51 76.5
TPR.G24652 Trifolium pratense HOM05D004503 ORTHO05D005460 7.3e-15 87.0 48 91.7
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 2.3e-13 82.0 67 56.7
SalBow8G3309 Salvia bowleyana HOM05D004503 ORTHO05D005460 5.2e-13 80.9 50 78.0
Lsat_1_v5_gn_4_85140 Lactuca sativa HOM05D003203 ORTHO05D003526 3.2e-10 71.6 60 65.0
Lsat_1_v5_gn_8_136521 Lactuca sativa HOM05D004503 ORTHO05D000404 4.6e-09 67.8 80 46.2
MBI10_g02226_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 7.8e-09 67.0 35 85.7
Rhsim08G0005700 Rhododendron simsii HOM05D004503 ORTHO05D037450 1.5e-07 62.8 85 50.6
C04p09630 Brassica napus HOM05D004503 ORTHO05D005460 1.6e-06 59.3 87 44.8
BolC4t22570H Brassica oleracea HOM05D004503 ORTHO05D005460 1.6e-06 59.3 87 44.8
Lsat_1_v5_gn_6_24580 Lactuca sativa HOM05D003889 ORTHO05D004407 4.7e-06 57.8 33 75.8


User provided reference genes

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