Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO478G1721 Papaver somniferum HOM05D005043 ORTHO05D006182 2.0e-204 715.7 395 100.0
PSO782G2110 Papaver somniferum HOM05D005043 ORTHO05D006182 6.4e-155 551.2 389 81.2
PSO478G3490 Papaver somniferum HOM05D005043 ORTHO05D006182 5.1e-152 541.6 357 84.9
PSO782G5034 Papaver somniferum HOM05D005043 ORTHO05D006182 1.5e-143 513.5 366 82.0
PSO384G1010 Papaver somniferum HOM05D005043 ORTHO05D006182 2.2e-115 419.9 355 65.9
BcaB06g29516 Brassica carinata HOM05D005043 ORTHO05D006182 1.5e-63 247.7 381 39.4
C05p52260 Brassica napus HOM05D005043 ORTHO05D006182 1.5e-63 247.7 381 39.4
A05p34520 Brassica napus HOM05D005043 ORTHO05D006182 7.5e-63 245.4 385 39.2
BraA05t22272Z Brassica rapa HOM05D005043 ORTHO05D006182 7.5e-63 245.4 385 39.2
BolC5t33915H Brassica oleracea HOM05D005043 ORTHO05D006182 2.9e-62 243.4 385 39.7
BcaB06g25330 Brassica carinata HOM05D005043 ORTHO05D006182 1.1e-61 241.5 383 37.6
Sp3g13100 Schrenkiella parvula HOM05D005043 ORTHO05D006182 7.1e-61 238.8 398 38.4
Lsat_1_v5_gn_9_99860 Lactuca sativa HOM05D005043 ORTHO05D006182 8.6e-59 231.9 352 42.3
CARHR089830 Cardamine hirsuta HOM05D005043 ORTHO05D006182 2.4e-56 223.8 403 40.9
AL3G27210 Arabidopsis lyrata HOM05D005043 ORTHO05D006182 3.1e-56 223.4 404 36.1
Carub.0003s1455 Capsella rubella HOM05D005043 ORTHO05D006182 2.9e-54 216.9 406 35.5
AT3G14890 Arabidopsis thaliana HOM05D005043 ORTHO05D006182 4.9e-54 216.1 413 36.3
ECA240G0297 Erigeron canadensis HOM05D005043 ORTHO05D006182 3.0e-51 206.8 348 40.5
Rhsim06G0208200 Rhododendron simsii HOM05D005043 ORTHO05D006182 1.9e-42 177.6 552 31.0
A03p39040 Brassica napus HOM05D005043 ORTHO05D006182 1.4e-40 171.4 216 44.9
BcaNung07105 Brassica carinata HOM05D005043 ORTHO05D006182 5.3e-40 169.5 237 43.5
C03p47310 Brassica napus HOM05D005043 ORTHO05D006182 5.3e-40 169.5 282 38.7
BolC3t17001H Brassica oleracea HOM05D005043 ORTHO05D006182 5.3e-40 169.5 237 43.5
Thhalv10020510m.g Eutrema salsugineum HOM05D005043 ORTHO05D006182 2.0e-39 167.5 225 40.9
THA.LOC104822566 Tarenaya hassleriana HOM05D005043 ORTHO05D006182 9.9e-39 165.2 291 38.1
Atru.chr2.2132 Acer truncatum HOM05D005043 ORTHO05D006182 2.9e-38 163.7 264 39.8
ECA240G3232 Erigeron canadensis HOM05D005043 ORTHO05D006182 1.3e-35 154.8 214 42.1
HanXRQChr12g0362951 Helianthus annuus HOM05D005043 ORTHO05D006182 2.3e-35 154.1 262 38.9
Aa31LG8G2100 Aethionema arabicum HOM05D005043 ORTHO05D006182 6.7e-35 152.5 207 41.1
BraA03t13053Z Brassica rapa HOM05D005043 ORTHO05D006182 6.7e-35 152.5 250 40.0
HanXRQChr13g0390281 Helianthus annuus HOM05D005043 ORTHO05D006182 6.7e-35 152.5 271 36.9
RcHm_v2.0_Chr5g0030891 Rosa chinensis HOM05D005043 ORTHO05D006182 4.5e-31 139.8 217 47.9
FAN25G1853 Fragaria x ananassa HOM05D005043 ORTHO05D006182 1.9e-29 134.4 213 43.2
FvH4_3g18270 Fragaria vesca HOM05D005043 ORTHO05D006182 9.3e-29 132.1 215 43.7
FAN16G3394 Fragaria x ananassa HOM05D005043 ORTHO05D006182 1.2e-28 131.7 215 42.3
FAN11G3478 Fragaria x ananassa HOM05D005043 ORTHO05D006182 1.6e-28 131.3 215 42.3
FAN21G3659 Fragaria x ananassa HOM05D005043 ORTHO05D006182 1.6e-28 131.3 247 39.3
vmacro11941 Vaccinium macrocarpon HOM05D005043 ORTHO05D006182 4.6e-28 129.8 273 36.3
TAR636G1993 Trochodendron aralioides HOM05D005043 ORTHO05D006182 6.2e-25 119.4 125 56.0
Aqoxy7G03872 Aquilegia oxysepala HOM05D005043 ORTHO05D006182 1.8e-24 117.9 112 63.4
Nn7g37328 Nelumbo nucifera HOM05D005043 ORTHO05D006182 4.0e-24 116.7 116 55.2
MSTRG.12865 Avicennia marina HOM05D005043 ORTHO05D006182 3.4e-23 113.6 113 54.9
Migut.M00727 Erythranthe guttata HOM05D005043 ORTHO05D006182 3.4e-23 113.6 119 50.4
Lj1C829T6 Lonicera japonica HOM05D005043 ORTHO05D006182 5.8e-23 112.8 115 52.2
Ca_26224_v3 Cicer arietinum L. HOM05D005043 ORTHO05D006182 7.6e-23 112.5 117 54.7
Ciclev10023741m.g Citrus clementina HOM05D005043 ORTHO05D006182 7.6e-23 112.5 126 50.0
Hma1.2p1_0290F.1_g114850 Hydrangea macrophylla HOM05D005043 ORTHO05D006182 1.7e-22 111.3 104 61.5
MD11G1263900 Malus domestica HOM05D005043 ORTHO05D006182 1.7e-22 111.3 132 50.0
Dinv18365 Davidia involucrata HOM05D005043 ORTHO05D006182 2.2e-22 110.9 114 53.5
MBI06_g29324_MAGBIO Magnolia biondii HOM05D005043 ORTHO05D006182 2.2e-22 110.9 135 48.1
CANSAT35G1445 Cannabis sativa HOM05D005043 ORTHO05D006182 3.8e-22 110.2 108 52.8
Oeu031030.1 Olea europaea HOM05D005043 ORTHO05D006182 4.9e-22 109.8 103 57.3
Medtr6g466500 Medicago truncatula HOM05D005043 ORTHO05D006182 8.4e-22 109.0 138 50.0
TWI38G0078 Tripterygium wilfordii HOM05D005043 ORTHO05D006182 1.1e-21 108.6 113 53.1
SalBow1G3547 Salvia bowleyana HOM05D005043 ORTHO05D006182 2.5e-21 107.5 117 49.6
SalBow8G1024 Salvia bowleyana HOM05D005043 ORTHO05D006182 2.5e-21 107.5 117 49.6
Medtr6g052000 Medicago truncatula HOM05D005043 ORTHO05D006182 1.2e-20 105.1 95 60.0
CSS0038261 Camellia sinensis var. sinensis HOM05D005043 ORTHO05D006182 1.6e-20 104.8 106 53.8
SGA_v2.0_scaffold70G23376 Striga asiatica HOM05D005043 ORTHO05D006182 3.5e-20 103.6 102 52.0
Zm00001eb153930 Zea mays HOM05D005043 ORTHO05D006182 3.5e-20 103.6 244 32.0
Prupe.4G164600 Prunus persica HOM05D005043 ORTHO05D006182 1.0e-19 102.1 115 50.4
CAN.G375.16 Capsicum annuum HOM05D005043 ORTHO05D006182 1.3e-19 101.7 89 56.2
QL08p026221 Quercus lobata HOM05D005043 ORTHO05D006182 1.3e-19 101.7 110 51.8
Cc05_g11070 Coffea canephora HOM05D005043 ORTHO05D006182 1.8e-19 101.3 106 55.7
DCAR_017172 Daucus carota HOM05D005043 ORTHO05D006182 1.8e-19 101.3 94 56.4
CDE09G1444 Ceratophyllum demersum HOM05D005043 ORTHO05D006182 2.3e-19 100.9 104 51.9
COL.COLO4_17542 Corchorus olitorius HOM05D005043 ORTHO05D006182 2.3e-19 100.9 113 50.4
Sc16g0007590 Simmondsia chinensis HOM05D005043 ORTHO05D006182 2.3e-19 100.9 131 45.0
Solyc07g062430.3 Solanum lycopersicum HOM05D005043 ORTHO05D006182 5.1e-19 99.8 110 48.2
GSVIVG01014196001 Vitis vinifera HOM05D005043 ORTHO05D006182 6.7e-19 99.4 108 50.0
PGR083G1657 Punica granatum HOM05D005043 ORTHO05D006182 8.7e-19 99.0 120 46.7
Manes.15G094900 Manihot esculenta HOM05D005043 ORTHO05D006182 1.1e-18 98.6 95 54.7
Potri.001G390500 Populus trichocarpa HOM05D005043 ORTHO05D006182 1.1e-18 98.6 116 50.0
MSTRG.9725 Avicennia marina HOM05D005043 ORTHO05D000110 1.5e-18 98.2 93 50.5
Eucgr.F01242 Eucalyptus grandis HOM05D005043 ORTHO05D006182 1.5e-18 98.2 127 47.2
RcHm_v2.0_Chr5g0030901 Rosa chinensis HOM05D005043 ORTHO05D006182 1.5e-18 98.2 125 48.8
arahy.Tifrunner.gnm1.ann1.NUK3H0 Arachis hypogaea HOM05D005043 ORTHO05D006182 1.9e-18 97.8 108 51.9
Nitab4.5_0003565g0060 Nicotiana tabacum HOM05D005043 ORTHO05D006182 1.9e-18 97.8 99 52.5
Sopen07g030670 Solanum pennellii HOM05D005043 ORTHO05D006182 1.9e-18 97.8 86 54.7
PGSC0003DMG400007070 Solanum tuberosum HOM05D005043 ORTHO05D006182 2.5e-18 97.4 86 54.7
arahy.Tifrunner.gnm1.ann1.5E18AM Arachis hypogaea HOM05D005043 ORTHO05D006182 3.3e-18 97.1 108 51.9
Nitab4.5_0006953g0040 Nicotiana tabacum HOM05D005043 ORTHO05D006182 3.3e-18 97.1 129 45.0
CiPaw.11G160200 Carya illinoinensis HOM05D005043 ORTHO05D006182 4.3e-18 96.7 116 44.8
Sabra16G0255900 Salix brachista HOM05D005043 ORTHO05D006182 4.3e-18 96.7 125 48.8
Gohir.D01G042722 Gossypium hirsutum HOM05D005043 ORTHO05D006182 5.7e-18 96.3 117 50.4
Gorai.002G054600 Gossypium raimondii HOM05D005043 ORTHO05D006182 5.7e-18 96.3 117 50.4
Lj3g0009561 Lotus japonicus HOM05D005043 ORTHO05D006182 5.7e-18 96.3 125 47.2
Peaxi162Scf00111g01457 Petunia axillaris HOM05D005043 ORTHO05D006182 5.7e-18 96.3 88 53.4
Hund10554 Selenicereus undatus HOM05D005043 ORTHO05D006182 7.4e-18 95.9 105 47.6
VMungo1127G0129 Vigna mungo HOM05D005043 ORTHO05D006182 9.7e-18 95.5 111 51.4
Duzib213G0837 Durio zibethinus HOM05D005043 ORTHO05D006182 2.2e-17 94.4 100 50.0
CsaV3_4G033100 Cucumis sativus L. HOM05D005043 ORTHO05D006182 2.8e-17 94.0 112 48.2
Gohir.A01G054300 Gossypium hirsutum HOM05D005043 ORTHO05D006182 3.7e-17 93.6 100 53.0
MELO3C025641.2 Cucumis melo HOM05D005043 ORTHO05D006182 1.1e-16 92.0 112 48.2
Thecc.07G117100 Theobroma cacao HOM05D005043 ORTHO05D006182 1.1e-16 92.0 101 50.5
Phvul.011G162300 Phaseolus vulgaris HOM05D005043 ORTHO05D006182 1.4e-16 91.7 110 49.1
Lalb_Chr03g0031161 Lupinus albus HOM05D005043 ORTHO05D006182 3.1e-16 90.5 107 50.5
BcaB02g10384 Brassica carinata HOM05D001448 ORTHO05D005781 4.1e-16 90.1 211 28.4
AUR62042782 Chenopodium quinoa HOM05D005043 ORTHO05D006182 4.1e-16 90.1 96 51.0
Glyma.12G157700 Glycine max HOM05D005043 ORTHO05D006182 5.3e-16 89.7 94 50.0
PSO017G5465 Papaver somniferum HOM05D001448 ORTHO05D005781 6.9e-16 89.4 218 25.2
AUR62019576 Chenopodium quinoa HOM05D005043 ORTHO05D006182 9.0e-16 89.0 96 50.0
COL.COLO4_05599 Corchorus olitorius HOM05D001448 ORTHO05D005781 1.2e-15 88.6 224 27.7
Sc24g0003080 Simmondsia chinensis HOM05D001448 ORTHO05D005781 1.2e-15 88.6 223 26.5
Cpa.g.sc77.9 Carica papaya HOM05D005043 ORTHO05D006182 1.5e-15 88.2 149 38.9
Sed0006465 Sechium edule HOM05D005043 ORTHO05D006182 4.5e-15 86.7 110 45.5
PSO063G1607 Papaver somniferum HOM05D001448 ORTHO05D005781 5.9e-15 86.3 217 25.3
Zm00001eb094840 Zea mays HOM05D001448 ORTHO05D005781 7.7e-15 85.9 214 27.6
Atru.chr5.1640 Acer truncatum HOM05D001448 ORTHO05D005781 1.3e-14 85.1 214 25.7
MBI18_g10480_MAGBIO Magnolia biondii HOM05D001448 ORTHO05D005781 1.3e-14 85.1 219 23.7
SEGI_37980 Sequoiadendron giganteum HOM05D005043 ORTHO05D006182 1.7e-14 84.7 91 46.2
CANSAT01G0590 Cannabis sativa HOM05D001448 ORTHO05D005781 2.9e-14 84.0 214 24.8
TWI18G1036 Tripterygium wilfordii HOM05D001448 ORTHO05D005781 2.9e-14 84.0 219 24.7
ATR1131G028 Amborella trichopoda HOM05D005043 ORTHO05D006182 3.8e-14 83.6 109 46.8
SalBow4G1626 Salvia bowleyana HOM05D001448 ORTHO05D005781 3.8e-14 83.6 186 26.3
Psat3g076960 Pisum sativum HOM05D005043 ORTHO05D006182 5.0e-14 83.2 79 51.9
SalBow4G1745 Salvia bowleyana HOM05D001448 ORTHO05D005781 5.0e-14 83.2 186 26.3
EL10Ac4g08345 Beta vulgaris HOM05D005043 ORTHO05D006182 6.5e-14 82.8 111 46.8
Cpa.g.sc50.45 Carica papaya HOM05D001448 ORTHO05D005781 6.5e-14 82.8 179 26.3
ClCG07G000900 Citrullus lanatus HOM05D001448 ORTHO05D005781 8.5e-14 82.4 208 26.9
Psat3g077040 Pisum sativum HOM05D005043 ORTHO05D006182 8.5e-14 82.4 82 57.3
Haze_09322 Corylus avellana HOM05D005043 ORTHO05D006182 1.1e-13 82.0 83 45.8
Nn1g02698 Nelumbo nucifera HOM05D001448 ORTHO05D005781 1.1e-13 82.0 204 26.0
Os07g0413700 Oryza sativa ssp. japonica HOM05D001448 ORTHO05D005781 1.1e-13 82.0 214 28.0
Hund09588 Selenicereus undatus HOM05D001448 ORTHO05D005781 1.1e-13 82.0 223 26.9
TWI18G1083 Tripterygium wilfordii HOM05D001448 ORTHO05D005781 1.4e-13 81.6 182 25.8
MD05G1201000 Malus domestica HOM05D001448 ORTHO05D005781 1.9e-13 81.3 186 27.4
Prupe.8G227600 Prunus persica HOM05D001448 ORTHO05D005781 1.9e-13 81.3 186 26.3
ClCG11G017440 Citrullus lanatus HOM05D005043 ORTHO05D006182 2.5e-13 80.9 165 38.2
Duzib138G0307 Durio zibethinus HOM05D001448 ORTHO05D005781 2.5e-13 80.9 211 26.1
Aqoxy5G00274 Aquilegia oxysepala HOM05D001448 ORTHO05D005781 3.2e-13 80.5 201 27.4
EL10Ac5g10426 Beta vulgaris HOM05D001448 ORTHO05D005781 4.2e-13 80.1 219 27.9
Dinv22438 Davidia involucrata HOM05D001448 ORTHO05D005781 4.2e-13 80.1 223 24.2
Os01g0737300 Oryza sativa ssp. japonica HOM05D005043 ORTHO05D006182 4.2e-13 80.1 81 45.7
Sc24g0002470 Simmondsia chinensis HOM05D001448 ORTHO05D005781 7.2e-13 79.3 185 24.9
Cfa002395 Carpinus fangiana HOM05D001448 ORTHO05D005781 9.4e-13 79.0 182 25.8
Haze_24590 Corylus avellana HOM05D001448 ORTHO05D005781 9.4e-13 79.0 183 27.3
Haze_24594 Corylus avellana HOM05D001448 ORTHO05D005781 9.4e-13 79.0 209 25.4
Sp4g13800 Schrenkiella parvula HOM05D001448 ORTHO05D005781 9.4e-13 79.0 182 27.5
MD10G1187800 Malus domestica HOM05D001448 ORTHO05D005781 1.6e-12 78.2 186 26.3
Nitab4.5_0004192g0040 Nicotiana tabacum HOM05D001448 ORTHO05D005781 2.1e-12 77.8 218 22.9
Migut.D00407 Erythranthe guttata HOM05D001448 ORTHO05D005781 3.6e-12 77.0 218 24.8
SMO118G0342 Selaginella moellendorffii HOM05D001448 ORTHO05D005781 3.6e-12 77.0 196 26.0
CARHR124940 Cardamine hirsuta HOM05D001448 ORTHO05D005781 6.1e-12 76.3 215 24.7
Psat3g076840 Pisum sativum HOM05D005043 ORTHO05D006182 6.1e-12 76.3 88 47.7
Psat3g076920 Pisum sativum HOM05D005043 ORTHO05D006182 6.1e-12 76.3 79 49.4
GSVIVG01028296001 Vitis vinifera HOM05D001448 ORTHO05D005781 6.1e-12 76.3 217 24.9
Ca_08659_v3 Cicer arietinum L. HOM05D001448 ORTHO05D005781 7.9e-12 75.9 229 25.8
Ah.02g111820 Amaranthus hybridus HOM05D001448 ORTHO05D005781 1.0e-11 75.5 218 25.2
Pp3c8_17220 Physcomitrium patens HOM05D001448 ORTHO05D005781 1.0e-11 75.5 197 28.4
Mapoly0154s0015 Marchantia polymorpha HOM05D001448 ORTHO05D005781 1.4e-11 75.1 208 28.4
Rhsim01G0266300 Rhododendron simsii HOM05D001448 ORTHO05D005781 1.8e-11 74.7 230 24.8
Thecc.01G262000 Theobroma cacao HOM05D001448 ORTHO05D005781 3.9e-11 73.6 187 24.6
TPR.G17654 Trifolium pratense HOM05D005043 ORTHO05D006182 8.8e-11 72.4 53 64.2
TAR636G3322 Trochodendron aralioides HOM05D001448 ORTHO05D005781 1.1e-10 72.0 219 24.7
vmacro14854 Vaccinium macrocarpon HOM05D001448 ORTHO05D005781 1.1e-10 72.0 198 25.3
Lj2g0018286 Lotus japonicus HOM05D001448 ORTHO05D005781 2.0e-10 71.2 187 24.6
Mapoly0030s0138 Marchantia polymorpha HOM05D001448 ORTHO05D005781 2.0e-10 71.2 157 29.3
CBR_g1120 Chara braunii HOM05D001448 ORTHO05D005781 5.7e-10 69.7 283 27.9
TPR.G12585 Trifolium pratense HOM05D005043 ORTHO05D006182 7.4e-10 69.3 90 44.4
Eucgr.K03285 Eucalyptus grandis HOM05D001448 ORTHO05D005781 1.3e-09 68.6 206 25.2
Pp3c8_13220 Physcomitrium patens HOM05D001448 ORTHO05D005781 2.2e-09 67.8 203 28.1
AagrBONN_evm.TU.Sc2ySwM_228.1872 Anthoceros agrestis HOM05D005043 ORTHO05D006182 4.8e-09 66.6 109 37.6
Duzib211G0273 Durio zibethinus HOM05D001448 ORTHO05D005781 6.3e-09 66.2 181 26.0
Dinv03004 Davidia involucrata HOM05D001448 ORTHO05D005781 1.8e-08 64.7 221 21.7
Lj1g0021166 Lotus japonicus HOM05D001448 ORTHO05D005781 5.9e-07 59.7 273 24.5
Pp3c6_17140 Physcomitrium patens HOM05D005043 ORTHO05D006182 1.0e-06 58.9 122 31.1
SEGI_24892 Sequoiadendron giganteum HOM05D001448 ORTHO05D005781 1.0e-06 58.9 157 30.6
VMungo1383G0732 Vigna mungo HOM05D001448 ORTHO05D005781 1.7e-06 58.2 203 25.6
CBR_g66772 Chara braunii HOM05D005043 ORTHO05D006182 3.8e-06 57.0 106 36.8
BolC4t23436H Brassica oleracea HOM05D001448 ORTHO05D005781 5.0e-06 56.6 219 25.1
BcaC02g11226 Brassica carinata HOM05D001448 ORTHO05D005781 6.5e-06 56.2 287 24.4
Medtr7g096520 Medicago truncatula HOM05D001448 ORTHO05D005781 6.5e-06 56.2 213 24.4


User provided reference genes

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