Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G3548 Papaver somniferum HOM05D003266 ORTHO05D003718 4.7e-227 790.8 385 100.0
PSO339G2930 Papaver somniferum HOM05D003266 ORTHO05D003718 2.3e-149 532.7 319 83.7
PSO017G5626 Papaver somniferum HOM05D003266 ORTHO05D003718 7.9e-142 507.7 319 78.7
PSO210G4271 Papaver somniferum HOM05D003266 ORTHO05D003718 2.3e-125 453.0 374 63.6
PSO210G6470 Papaver somniferum HOM05D003266 ORTHO05D003718 1.2e-124 450.7 374 62.8
GSVIVG01017040001 Vitis vinifera HOM05D003266 ORTHO05D003718 6.1e-110 401.7 349 60.2
Lj5C56T10 Lonicera japonica HOM05D003266 ORTHO05D003718 7.5e-108 394.8 358 57.3
MSTRG.22654 Avicennia marina HOM05D003266 ORTHO05D003718 1.1e-106 391.0 353 56.1
Migut.I00926 Erythranthe guttata HOM05D003266 ORTHO05D003718 2.4e-106 389.8 341 59.2
CiPaw.01G233800 Carya illinoinensis HOM05D003266 ORTHO05D003718 5.4e-106 388.7 348 57.8
SalBow2G0145 Salvia bowleyana HOM05D003266 ORTHO05D003718 9.2e-106 387.9 343 59.5
Cfa002112 Carpinus fangiana HOM05D003266 ORTHO05D003718 3.5e-105 386.0 348 57.5
Dinv38001 Davidia involucrata HOM05D003266 ORTHO05D003718 3.5e-105 386.0 349 58.7
Nn2g12597 Nelumbo nucifera HOM05D003266 ORTHO05D003718 3.5e-105 386.0 375 55.2
vmacro18872 Vaccinium macrocarpon HOM05D003266 ORTHO05D003718 3.5e-105 386.0 348 57.5
Rhsim08G0225600 Rhododendron simsii HOM05D003266 ORTHO05D003718 4.6e-105 385.6 348 57.2
Potri.001G186900 Populus trichocarpa HOM05D003266 ORTHO05D003718 1.0e-104 384.4 349 57.0
DCAR_026337 Daucus carota HOM05D003266 ORTHO05D003718 8.6e-104 381.3 348 57.2
Nitab4.5_0002424g0070 Nicotiana tabacum HOM05D003266 ORTHO05D003718 8.6e-104 381.3 349 56.7
QL05p021182 Quercus lobata HOM05D003266 ORTHO05D003718 8.6e-104 381.3 348 57.2
TAR626G0182 Trochodendron aralioides HOM05D003266 ORTHO05D003718 8.6e-104 381.3 384 53.1
TAR636G2661 Trochodendron aralioides HOM05D003266 ORTHO05D003718 1.9e-103 380.2 384 52.9
Sabra01G0153400 Salix brachista HOM05D003266 ORTHO05D003718 2.5e-103 379.8 348 57.8
PGSC0003DMG401002553 Solanum tuberosum HOM05D003266 ORTHO05D003718 2.5e-103 379.8 351 56.4
Haze_16335 Corylus avellana HOM05D003266 ORTHO05D003718 3.3e-103 379.4 358 55.6
Glyma.13G356200 Glycine max HOM05D003266 ORTHO05D003718 4.3e-103 379.0 351 54.7
Sopen00g008370 Solanum pennellii HOM05D003266 ORTHO05D003718 4.3e-103 379.0 350 56.3
Phvul.005G170100 Phaseolus vulgaris HOM05D003266 ORTHO05D003718 9.5e-103 377.9 347 55.9
Actinidia21698 Actinidia chinensis HOM05D003266 ORTHO05D003718 1.6e-102 377.1 349 56.7
CSS0038683 Camellia sinensis var. sinensis HOM05D003266 ORTHO05D003718 2.8e-102 376.3 343 56.9
Hma1.2p1_1689F.1_g297710 Hydrangea macrophylla HOM05D003266 ORTHO05D003718 2.8e-102 376.3 356 56.2
MBI04_g27074_MAGBIO Magnolia biondii HOM05D003266 ORTHO05D003718 3.6e-102 375.9 384 52.9
Cc04_g02800 Coffea canephora HOM05D003266 ORTHO05D003718 4.7e-102 375.6 344 55.5
Duzib160G0509 Durio zibethinus HOM05D003266 ORTHO05D003718 8.0e-102 374.8 351 55.3
RcHm_v2.0_Chr2g0139581 Rosa chinensis HOM05D003266 ORTHO05D003718 8.0e-102 374.8 349 57.0
arahy.Tifrunner.gnm1.ann1.MP8KIY Arachis hypogaea HOM05D003266 ORTHO05D003718 1.8e-101 373.6 348 55.5
Glyma.15G017900 Glycine max HOM05D003266 ORTHO05D003718 2.3e-101 373.2 347 54.8
Solyc03g120470.4 Solanum lycopersicum HOM05D003266 ORTHO05D003718 2.3e-101 373.2 351 55.8
CSS0002644 Camellia sinensis var. sinensis HOM05D003266 ORTHO05D003718 3.1e-101 372.9 331 59.5
VMungo1080G0852 Vigna mungo HOM05D003266 ORTHO05D003718 3.1e-101 372.9 347 55.6
Manes.11G036300 Manihot esculenta HOM05D003266 ORTHO05D003718 4.0e-101 372.5 349 55.9
Ciclev10024815m.g Citrus clementina HOM05D003266 ORTHO05D003718 5.2e-101 372.1 347 55.0
HanXRQChr16g0501281 Helianthus annuus HOM05D003266 ORTHO05D003718 1.2e-100 370.9 331 60.4
TAR383G0500 Trochodendron aralioides HOM05D003266 ORTHO05D003718 1.2e-100 370.9 381 53.0
Thecc.06G095700 Theobroma cacao HOM05D003266 ORTHO05D003718 1.5e-100 370.5 351 55.6
Sc12g0009560 Simmondsia chinensis HOM05D003266 ORTHO05D003718 2.0e-100 370.2 339 56.3
Sc12g0009670 Simmondsia chinensis HOM05D003266 ORTHO05D003718 2.0e-100 370.2 339 56.3
Aqoxy7G01499 Aquilegia oxysepala HOM05D003266 ORTHO05D003718 2.6e-100 369.8 384 52.6
Lj3g0015133 Lotus japonicus HOM05D003266 ORTHO05D003718 2.6e-100 369.8 347 54.8
Prupe.3G063700 Prunus persica HOM05D003266 ORTHO05D003718 4.4e-100 369.0 347 55.0
COL.COLO4_30471 Corchorus olitorius HOM05D003266 ORTHO05D003718 1.3e-99 367.5 350 54.9
Medtr2g101390 Medicago truncatula HOM05D003266 ORTHO05D003718 1.7e-99 367.1 348 54.9
Cpa.g.sc34.31 Carica papaya HOM05D003266 ORTHO05D003718 3.7e-99 365.9 338 56.8
Psat5g297200 Pisum sativum HOM05D003266 ORTHO05D003718 3.7e-99 365.9 345 55.9
Aa31LG10G2720 Aethionema arabicum HOM05D003266 ORTHO05D003718 4.9e-99 365.5 332 55.7
Lalb_Chr22g0351451 Lupinus albus HOM05D003266 ORTHO05D003718 4.9e-99 365.5 347 55.6
TWI12G1119 Tripterygium wilfordii HOM05D003266 ORTHO05D003718 4.9e-99 365.5 348 55.2
MD03G1197500 Malus domestica HOM05D003266 ORTHO05D003718 8.3e-99 364.8 347 54.5
ECA232G0114 Erigeron canadensis HOM05D003266 ORTHO05D003718 1.1e-98 364.4 346 56.6
Ah.01g021810 Amaranthus hybridus HOM05D003266 ORTHO05D003718 1.4e-98 364.0 347 55.6
FvH4_6g31990 Fragaria vesca HOM05D003266 ORTHO05D003718 1.4e-98 364.0 347 55.9
FAN05G1225 Fragaria x ananassa HOM05D003266 ORTHO05D003718 1.9e-98 363.6 349 55.3
Atru.chr1.3468 Acer truncatum HOM05D003266 ORTHO05D003718 7.0e-98 361.7 348 53.7
AUR62031873 Chenopodium quinoa HOM05D003266 ORTHO05D003718 7.0e-98 361.7 351 54.4
FAN14G1864 Fragaria x ananassa HOM05D003266 ORTHO05D003718 7.0e-98 361.7 347 55.6
Gohir.D10G068200 Gossypium hirsutum HOM05D003266 ORTHO05D003718 7.0e-98 361.7 351 54.1
Gorai.011G072800 Gossypium raimondii HOM05D003266 ORTHO05D003718 7.0e-98 361.7 351 54.1
Lsat_1_v5_gn_4_100861 Lactuca sativa HOM05D003266 ORTHO05D003718 9.2e-98 361.3 333 56.5
THA.LOC104817970 Tarenaya hassleriana HOM05D003266 ORTHO05D003718 9.2e-98 361.3 336 54.5
MELO3C024265.2 Cucumis melo HOM05D003266 ORTHO05D003718 1.2e-97 360.9 348 54.9
Nitab4.5_0013558g0010 Nicotiana tabacum HOM05D003266 ORTHO05D003718 1.2e-97 360.9 353 55.2
Sed0017993 Sechium edule HOM05D003266 ORTHO05D003718 1.2e-97 360.9 349 54.4
CsaV3_7G033540 Cucumis sativus L. HOM05D003266 ORTHO05D003718 1.6e-97 360.5 348 54.9
HanXRQChr09g0275951 Helianthus annuus HOM05D003266 ORTHO05D003718 1.6e-97 360.5 347 55.3
Lalb_Chr24g0396021 Lupinus albus HOM05D003266 ORTHO05D003718 2.7e-97 359.8 347 55.0
TPR.G37248 Trifolium pratense HOM05D003266 ORTHO05D003718 3.5e-97 359.4 352 52.8
BcaB06g25715 Brassica carinata HOM05D003266 ORTHO05D003718 3.0e-96 356.3 333 55.3
PGR102G0722 Punica granatum HOM05D003266 ORTHO05D003718 6.6e-96 355.1 345 54.8
Gohir.A10G067100 Gossypium hirsutum HOM05D003266 ORTHO05D003718 8.6e-96 354.8 351 53.8
A05p33260 Brassica napus HOM05D003266 ORTHO05D003718 1.1e-95 354.4 332 55.4
Peaxi162Scf00034g00317 Petunia axillaris HOM05D003266 ORTHO05D003718 1.1e-95 354.4 349 54.4
AUR62032707 Chenopodium quinoa HOM05D003266 ORTHO05D003718 1.5e-95 354.0 351 53.6
Sp3g14630 Schrenkiella parvula HOM05D003266 ORTHO05D003718 1.5e-95 354.0 336 54.5
AL3G29000 Arabidopsis lyrata HOM05D003266 ORTHO05D003718 2.5e-95 353.2 336 53.3
A06p02000 Brassica napus HOM05D003266 ORTHO05D003718 4.3e-95 352.4 328 55.8
BraA05t22151Z Brassica rapa HOM05D003266 ORTHO05D003718 4.3e-95 352.4 332 54.8
Actinidia32711 Actinidia chinensis HOM05D003266 ORTHO05D003718 5.6e-95 352.1 351 54.1
AT1G52160 Arabidopsis thaliana HOM05D003266 ORTHO05D003718 5.6e-95 352.1 339 54.0
EL10Ac9g22044 Beta vulgaris HOM05D003266 ORTHO05D003718 5.6e-95 352.1 350 54.6
BraA06t23416Z Brassica rapa HOM05D003266 ORTHO05D003718 7.3e-95 351.7 328 55.8
Sed0020980 Sechium edule HOM05D003266 ORTHO05D003718 7.3e-95 351.7 348 53.2
BolC5t33776H Brassica oleracea HOM05D003266 ORTHO05D003718 9.5e-95 351.3 332 55.1
Thhalv10019999m.g Eutrema salsugineum HOM05D003266 ORTHO05D003718 9.5e-95 351.3 338 54.1
C05p50250 Brassica napus HOM05D003266 ORTHO05D003718 1.2e-94 350.9 332 55.1
Carub.0001s4111 Capsella rubella HOM05D003266 ORTHO05D003718 1.2e-94 350.9 339 52.8
Eucgr.J02950 Eucalyptus grandis HOM05D003266 ORTHO05D003718 2.1e-94 350.1 341 53.1
AT3G16260 Arabidopsis thaliana HOM05D003266 ORTHO05D003718 2.8e-94 349.7 336 53.0
CARHR091470 Cardamine hirsuta HOM05D003266 ORTHO05D003718 2.8e-94 349.7 344 53.2
ClCG09G001800 Citrullus lanatus HOM05D003266 ORTHO05D003718 2.8e-94 349.7 348 53.7
Aa31LG8G3410 Aethionema arabicum HOM05D003266 ORTHO05D003718 8.1e-94 348.2 341 53.7
BcaC08g43373 Brassica carinata HOM05D003266 ORTHO05D003718 1.1e-93 347.8 328 56.4
C06p07410 Brassica napus HOM05D003266 ORTHO05D003718 1.1e-93 347.8 328 56.4
CANSAT80G0796 Cannabis sativa HOM05D003266 ORTHO05D003718 1.1e-93 347.8 350 53.4
Hund00661 Selenicereus undatus HOM05D003266 ORTHO05D003718 1.1e-93 347.8 380 51.3
Thhalv10011231m.g Eutrema salsugineum HOM05D003266 ORTHO05D003718 1.4e-93 347.4 333 54.4
BolC6t35830H Brassica oleracea HOM05D003266 ORTHO05D003718 2.3e-93 346.7 328 55.8
ATR0705G157 Amborella trichopoda HOM05D003266 ORTHO05D003718 3.1e-93 346.3 378 52.1
BcaC05g28901 Brassica carinata HOM05D003266 ORTHO05D003718 3.1e-93 346.3 332 54.5
PGSC0003DMG400026462 Solanum tuberosum HOM05D003266 ORTHO05D003718 8.9e-93 344.7 336 55.4
AL1G60260 Arabidopsis lyrata HOM05D003266 ORTHO05D003718 1.2e-92 344.4 340 53.2
Carub.0003s1601 Capsella rubella HOM05D003266 ORTHO05D003718 3.4e-92 342.8 336 52.7
CARHR042320 Cardamine hirsuta HOM05D003266 ORTHO05D003718 3.4e-92 342.8 336 53.0
Sp1g38720 Schrenkiella parvula HOM05D003266 ORTHO05D003718 3.4e-92 342.8 339 52.5
Nitab4.5_0003039g0050 Nicotiana tabacum HOM05D003266 ORTHO05D003718 4.4e-92 342.4 331 55.0
Sopen12g022640 Solanum pennellii HOM05D003266 ORTHO05D003718 3.7e-91 339.3 336 55.1
CANSAT56G3441 Cannabis sativa HOM05D003266 ORTHO05D003718 8.3e-91 338.2 344 52.9
Solyc12g044370.3 Solanum lycopersicum HOM05D003266 ORTHO05D003718 8.3e-91 338.2 337 54.3
CSS0038057 Camellia sinensis var. sinensis HOM05D003266 ORTHO05D003718 1.4e-90 337.4 343 53.4
CANSAT80G0873 Cannabis sativa HOM05D003266 ORTHO05D003718 3.2e-90 336.3 346 52.9
Peaxi162Scf00015g00241 Petunia axillaris HOM05D003266 ORTHO05D003718 5.4e-90 335.5 349 51.6
Manes.08G110200 Manihot esculenta HOM05D003266 ORTHO05D003718 1.6e-89 334.0 346 51.4
Hund06647 Selenicereus undatus HOM05D003266 ORTHO05D003718 6.0e-89 332.0 349 53.0
CAN.G438.41 Capsicum annuum HOM05D003266 ORTHO05D003718 1.0e-88 331.3 413 45.8
Zm00001eb339290 Zea mays HOM05D003266 ORTHO05D003718 2.3e-88 330.1 367 46.3
SHI11014 Sapria himalayana HOM05D003266 ORTHO05D003718 2.5e-87 326.6 350 50.0
SEGI_12386 Sequoiadendron giganteum HOM05D003266 ORTHO05D003718 2.8e-86 323.2 385 46.5
AUR62032438 Chenopodium quinoa HOM05D003266 ORTHO05D003718 4.0e-85 319.3 346 51.2
Ca_01149_v3 Cicer arietinum L. HOM05D003266 ORTHO05D003718 8.9e-85 318.2 321 52.0
EL10Ac2g02463 Beta vulgaris HOM05D003266 ORTHO05D003718 1.5e-84 317.4 340 49.7
AUR62024783 Chenopodium quinoa HOM05D003266 ORTHO05D003718 2.0e-84 317.0 347 50.1
arahy.Tifrunner.gnm1.ann1.X5C2Q6 Arachis hypogaea HOM05D003266 ORTHO05D003718 2.6e-84 316.6 311 52.7
Hund09088 Selenicereus undatus HOM05D003266 ORTHO05D003718 7.6e-84 315.1 349 50.4
SGA_v2.0_scaffold69G23353 Striga asiatica HOM05D003266 ORTHO05D003718 2.2e-83 313.5 285 56.1
Gohir.A01G067100 Gossypium hirsutum HOM05D003266 ORTHO05D003718 6.4e-83 312.0 347 48.7
CDE05G0037 Ceratophyllum demersum HOM05D003266 ORTHO05D003718 9.6e-79 298.1 327 50.5
Sopen10g030300 Solanum pennellii HOM05D003266 ORTHO05D003718 2.8e-78 296.6 349 46.7
Lj9C510G10 Lonicera japonica HOM05D003266 ORTHO05D003718 3.6e-78 296.2 357 49.6
Mapoly0003s0137 Marchantia polymorpha HOM05D003266 ORTHO05D003718 3.8e-75 286.2 354 43.8
CAN.G394.131 Capsicum annuum HOM05D003266 ORTHO05D003718 4.9e-75 285.8 345 45.8
Aqoxy5G00790 Aquilegia oxysepala HOM05D003266 ORTHO05D003718 1.9e-74 283.9 373 44.2
Gorai.002G074200 Gossypium raimondii HOM05D003266 ORTHO05D003718 4.2e-74 282.7 384 43.0
Nitab4.5_0000571g0240 Nicotiana tabacum HOM05D003266 ORTHO05D003718 1.3e-72 277.7 345 44.6
CAN.G641.60 Capsicum annuum HOM05D003266 ORTHO05D003718 1.5e-71 274.2 354 44.9
Gohir.D01G054332 Gossypium hirsutum HOM05D003266 ORTHO05D003718 4.0e-69 266.2 389 41.6
Nitab4.5_0006515g0010 Nicotiana tabacum HOM05D003266 ORTHO05D003718 3.4e-68 263.1 353 43.1
Pp3c14_3370 Physcomitrium patens HOM05D003266 ORTHO05D003718 2.2e-67 260.4 383 39.2
SMO134G0187 Selaginella moellendorffii HOM05D003266 ORTHO05D003718 2.2e-67 260.4 346 41.3
Solyc10g079670.2 Solanum lycopersicum HOM05D003266 ORTHO05D003718 4.9e-67 259.2 347 43.8
COL.COLO4_08423 Corchorus olitorius HOM05D003266 ORTHO05D003718 1.8e-61 240.7 321 42.1
Oeu040356.1 Olea europaea HOM05D003266 ORTHO05D003718 2.1e-57 227.3 229 51.5
SMO201G0121 Selaginella moellendorffii HOM05D003266 ORTHO05D003718 1.1e-55 221.5 323 39.3
CBR_g8326 Chara braunii HOM05D003266 ORTHO05D003718 1.2e-52 211.5 517 30.0
COL.COLO4_22674 Corchorus olitorius HOM05D003266 ORTHO05D003718 1.2e-52 211.5 245 47.3
COL.COLO4_29286 Corchorus olitorius HOM05D003266 ORTHO05D003718 5.0e-35 152.9 170 48.8
unitig_748.g8095 Utricularia gibba HOM05D003266 ORTHO05D003718 3.6e-33 146.7 317 33.4
Oeu062570.2 Olea europaea HOM05D003266 ORTHO05D003718 1.4e-32 144.8 132 55.3
PRCOL_00000971 Prasinoderma coloniale HOM05D003266 ORTHO05D003718 1.1e-31 141.7 331 30.5
Nitab4.5_0001147g0070 Nicotiana tabacum HOM05D003266 ORTHO05D003718 4.4e-31 139.8 297 31.3
Ca_01038_v3 Cicer arietinum L. HOM05D007335 ORTHO05D009113 3.2e-26 123.6 121 52.9
Nitab4.5_0001147g0060 Nicotiana tabacum HOM05D003266 ORTHO05D003718 1.2e-25 121.7 284 31.0
Psat2g178960 Pisum sativum HOM05D003266 ORTHO05D003718 2.0e-23 114.4 114 53.5
Nitab4.5_0006202g0010 Nicotiana tabacum HOM05D003266 ORTHO05D003718 5.3e-21 106.3 59 81.4
Psat1g100680 Pisum sativum HOM05D003266 ORTHO05D003718 7.0e-21 105.9 115 51.3
Cre01.g039900 Chlamydomonas reinhardtii HOM05D003266 ORTHO05D003718 4.0e-16 90.1 428 23.1
AUR62022165 Chenopodium quinoa HOM05D003266 ORTHO05D003718 2.6e-15 87.4 47 89.4
Hma1.2p1_1689F.1_g297680 Hydrangea macrophylla HOM05D003266 ORTHO05D003718 2.2e-14 84.3 47 87.2
CAN.G144.12 Capsicum annuum HOM05D003266 ORTHO05D003718 3.1e-13 80.5 75 57.3
Lsat_1_v5_gn_3_136441 Lactuca sativa HOM05D004146 ORTHO05D004843 8.5e-11 72.4 71 53.5
Nn2g11635 Nelumbo nucifera HOM05D003266 ORTHO05D003718 8.5e-11 72.4 77 48.1
Os01g0232300 Oryza sativa ssp. japonica HOM05D003266 ORTHO05D003718 1.5e-10 71.6 51 66.7
CDE05G0524 Ceratophyllum demersum HOM05D003266 ORTHO05D003718 4.7e-09 66.6 51 62.7
SMO173G0095 Selaginella moellendorffii HOM05D003266 ORTHO05D003718 6.1e-09 66.2 262 26.0
Lsat_1_v5_gn_8_147141 Lactuca sativa HOM05D004146 ORTHO05D004843 3.0e-08 63.9 71 50.7
SEGI_01034 Sequoiadendron giganteum HOM05D003266 ORTHO05D036665 3.0e-08 63.9 310 25.5
SEGI_37309 Sequoiadendron giganteum HOM05D003266 ORTHO05D036665 3.0e-08 63.9 310 25.5
Zm00001eb423340 Zea mays HOM05D004309 ORTHO05D026220 3.0e-08 63.9 101 39.6
Zm00001eb194540 Zea mays HOM05D004309 ORTHO05D026220 2.0e-07 61.2 94 41.5
Pp3c18_12540 Physcomitrium patens HOM05D003266 ORTHO05D003718 3.4e-07 60.5 62 43.5
Peaxi162Scf00772g00068 Petunia axillaris HOM05D003266 ORTHO05D003718 5.7e-07 59.7 73 41.1
Peaxi162Scf00772g00610 Petunia axillaris HOM05D003266 ORTHO05D003718 7.5e-07 59.3 89 41.6
Zm00001eb085600 Zea mays HOM05D001297 ORTHO05D001135 1.7e-06 58.2 55 52.7
Zm00001eb024340 Zea mays HOM05D004309 ORTHO05D026220 3.7e-06 57.0 38 68.4
Zm00001eb097870 Zea mays HOM05D004309 ORTHO05D026220 3.7e-06 57.0 38 68.4


User provided reference genes

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