Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G3338 Papaver somniferum HOM05D004647 ORTHO05D005349 1.8e-81 305.8 155 100.0
PSO478G0146 Papaver somniferum HOM05D004647 ORTHO05D005349 4.9e-66 254.6 173 78.0
PSO017G4490 Papaver somniferum HOM05D004647 ORTHO05D005349 3.2e-65 251.9 171 78.4
Gorai.005G137000 Gossypium raimondii HOM05D004647 ORTHO05D005349 4.0e-52 208.4 169 63.9
Potri.012G080300 Populus trichocarpa HOM05D004647 ORTHO05D005349 6.8e-52 207.6 170 62.9
Sabra12G0057400 Salix brachista HOM05D004647 ORTHO05D005349 8.9e-52 207.2 170 64.1
Gohir.A03G097600 Gossypium hirsutum HOM05D004647 ORTHO05D005349 1.5e-51 206.5 169 63.3
Gohir.D02G116700 Gossypium hirsutum HOM05D004647 ORTHO05D005349 2.0e-51 206.1 169 63.3
Atru.chr9.2461 Acer truncatum HOM05D004647 ORTHO05D005349 2.6e-51 205.7 174 63.8
GSVIVG01007738001 Vitis vinifera HOM05D004647 ORTHO05D005349 2.6e-51 205.7 165 64.8
Ciclev10021986m.g Citrus clementina HOM05D004647 ORTHO05D005349 7.6e-51 204.1 164 65.2
TAR374G0909 Trochodendron aralioides HOM05D004647 ORTHO05D005349 1.3e-50 203.4 169 64.5
vmacro16607 Vaccinium macrocarpon HOM05D004647 ORTHO05D005349 3.8e-50 201.8 170 62.4
CsaV3_1G001530 Cucumis sativus L. HOM05D004647 ORTHO05D005349 4.9e-50 201.4 170 62.9
FAN04G0366 Fragaria x ananassa HOM05D004647 ORTHO05D005349 8.4e-50 200.7 164 64.6
RcHm_v2.0_Chr7g0193601 Rosa chinensis HOM05D004647 ORTHO05D005349 8.4e-50 200.7 162 64.8
Actinidia19099 Actinidia chinensis HOM05D004647 ORTHO05D005349 1.4e-49 199.9 170 61.8
Dinv02900 Davidia involucrata HOM05D004647 ORTHO05D005349 1.9e-49 199.5 172 59.9
MD06G1174300 Malus domestica HOM05D004647 ORTHO05D005349 1.9e-49 199.5 161 64.0
Hma1.2p1_0701F.1_g205920 Hydrangea macrophylla HOM05D004647 ORTHO05D005349 2.4e-49 199.1 170 62.9
Lj2g0019057 Lotus japonicus HOM05D004647 ORTHO05D005349 2.4e-49 199.1 170 61.8
TPR.G14966 Trifolium pratense HOM05D004647 ORTHO05D005349 2.4e-49 199.1 170 61.8
TPR.G19928 Trifolium pratense HOM05D004647 ORTHO05D005349 4.2e-49 198.4 170 61.2
Cc04_g13970 Coffea canephora HOM05D004647 ORTHO05D005349 5.4e-49 198.0 170 61.2
FAN13G1078 Fragaria x ananassa HOM05D004647 ORTHO05D005349 7.1e-49 197.6 162 64.2
Lj5A124T65 Lonicera japonica HOM05D004647 ORTHO05D005349 7.1e-49 197.6 166 62.7
arahy.Tifrunner.gnm1.ann1.HI7WIW Arachis hypogaea HOM05D004647 ORTHO05D005349 9.2e-49 197.2 169 60.9
PGR083G2070 Punica granatum HOM05D004647 ORTHO05D005349 9.2e-49 197.2 170 62.4
TWI15G0781 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 1.2e-48 196.8 170 61.2
CiPaw.11G026900 Carya illinoinensis HOM05D004647 ORTHO05D005349 1.6e-48 196.4 169 62.7
Psat2g127400 Pisum sativum HOM05D004647 ORTHO05D005349 1.6e-48 196.4 170 61.2
arahy.Tifrunner.gnm1.ann1.T8C5SJ Arachis hypogaea HOM05D004647 ORTHO05D005349 2.1e-48 196.1 169 60.9
FAN08G1047 Fragaria x ananassa HOM05D004647 ORTHO05D005349 2.1e-48 196.1 162 63.6
Eucgr.B00371 Eucalyptus grandis HOM05D004647 ORTHO05D005349 2.7e-48 195.7 162 63.6
CANSAT64G1060 Cannabis sativa HOM05D004647 ORTHO05D005349 3.5e-48 195.3 166 62.7
FAN18G2734 Fragaria x ananassa HOM05D004647 ORTHO05D005349 4.6e-48 194.9 164 62.8
Prupe.5G174300 Prunus persica HOM05D004647 ORTHO05D005349 4.6e-48 194.9 169 60.9
ATR0680G372 Amborella trichopoda HOM05D004647 ORTHO05D005349 6.0e-48 194.5 166 59.6
Glyma.02G112000 Glycine max HOM05D004647 ORTHO05D005349 7.8e-48 194.1 170 60.0
Lsat_1_v5_gn_4_75321 Lactuca sativa HOM05D004647 ORTHO05D005349 7.8e-48 194.1 171 59.6
Phvul.003G111100 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 7.8e-48 194.1 169 60.9
ClCG06G016990 Citrullus lanatus HOM05D004647 ORTHO05D005349 1.0e-47 193.7 169 60.9
HPP92_005895 Vanilla planifolia HOM05D004647 ORTHO05D005349 1.3e-47 193.4 162 62.3
COL.COLO4_30028 Corchorus olitorius HOM05D004647 ORTHO05D005349 1.7e-47 193.0 202 54.0
DCAR_016485 Daucus carota HOM05D004647 ORTHO05D005349 1.7e-47 193.0 166 60.2
Sed0013198 Sechium edule HOM05D004647 ORTHO05D005349 1.7e-47 193.0 169 60.4
Medtr5g043110 Medicago truncatula HOM05D004647 ORTHO05D005349 2.3e-47 192.6 170 60.0
Phvul.002G091200 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 2.3e-47 192.6 169 59.8
THA.LOC104807116 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 2.3e-47 192.6 170 58.8
THA.LOC104824976 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 2.3e-47 192.6 170 58.8
Glyma.01G053700 Glycine max HOM05D004647 ORTHO05D005349 3.9e-47 191.8 170 60.0
Rhsim12G0164400 Rhododendron simsii HOM05D004647 ORTHO05D005349 3.9e-47 191.8 170 59.4
Cpa.g.sc124.56 Carica papaya HOM05D004647 ORTHO05D005349 5.1e-47 191.4 170 59.4
QL10p011820 Quercus lobata HOM05D004647 ORTHO05D005349 5.1e-47 191.4 170 61.2
Aqoxy3G01032 Aquilegia oxysepala HOM05D004647 ORTHO05D005349 6.6e-47 191.0 165 60.0
MSTRG.11448 Avicennia marina HOM05D004647 ORTHO05D005349 1.1e-46 190.3 169 61.5
CDE11G0116 Ceratophyllum demersum HOM05D004647 ORTHO05D005349 1.9e-46 189.5 169 57.4
ECA232G2959 Erigeron canadensis HOM05D004647 ORTHO05D005349 1.9e-46 189.5 172 58.1
Nitab4.5_0000003g0580 Nicotiana tabacum HOM05D004647 ORTHO05D005349 1.9e-46 189.5 164 60.4
Nitab4.5_0000866g0170 Nicotiana tabacum HOM05D004647 ORTHO05D005349 1.9e-46 189.5 164 59.8
Oeu035987.1 Olea europaea HOM05D004647 ORTHO05D005349 1.9e-46 189.5 170 59.4
THA.LOC104801749 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 5.6e-46 188.0 166 59.0
Os01g0661400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 7.3e-46 187.6 162 61.7
Os01g0891400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 7.3e-46 187.6 162 61.7
AUR62030968 Chenopodium quinoa HOM05D004647 ORTHO05D005349 1.3e-45 186.8 170 57.6
Migut.I00016 Erythranthe guttata HOM05D004647 ORTHO05D005349 1.3e-45 186.8 169 58.6
Carub.0004s0503 Capsella rubella HOM05D004647 ORTHO05D005349 1.6e-45 186.4 166 59.0
HanXRQChr16g0504011 Helianthus annuus HOM05D004647 ORTHO05D005349 1.6e-45 186.4 161 59.0
Zm00001eb157740 Zea mays HOM05D004647 ORTHO05D005349 1.6e-45 186.4 164 60.4
Hund09433 Selenicereus undatus HOM05D004647 ORTHO05D005349 3.6e-45 185.3 170 57.1
CARHR059710 Cardamine hirsuta HOM05D004647 ORTHO05D005349 4.8e-45 184.9 168 58.9
Lalb_Chr10g0098541 Lupinus albus HOM05D004647 ORTHO05D005349 6.2e-45 184.5 162 60.5
Sc10g0010060 Simmondsia chinensis HOM05D004647 ORTHO05D005349 3.1e-44 182.2 164 59.1
Sopen06g027740 Solanum pennellii HOM05D004647 ORTHO05D005349 4.0e-44 181.8 164 58.5
Zm00001eb157720 Zea mays HOM05D004647 ORTHO05D005349 6.9e-44 181.0 162 59.9
PGSC0003DMG400027091 Solanum tuberosum HOM05D004647 ORTHO05D005349 9.0e-44 180.6 164 57.3
Thecc.03G011300 Theobroma cacao HOM05D004647 ORTHO05D005349 1.5e-43 179.9 142 64.8
AT4G32175 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 2.0e-43 179.5 168 56.0
AL7G19680 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 4.4e-43 178.3 168 56.5
CSS0008435 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 4.4e-43 178.3 170 57.1
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 4.4e-43 178.3 162 58.0
SGA_v2.0_scaffold90G27942 Striga asiatica HOM05D004647 ORTHO05D005349 4.4e-43 178.3 189 51.9
MBI16_g05634_MAGBIO Magnolia biondii HOM05D004647 ORTHO05D005349 5.8e-43 177.9 173 54.3
FvH4_5g05270 Fragaria vesca HOM05D004647 ORTHO05D005349 7.6e-43 177.6 143 64.3
Manes.14G066300 Manihot esculenta HOM05D004647 ORTHO05D005349 7.6e-43 177.6 102 82.4
CAN.G628.78 Capsicum annuum HOM05D004647 ORTHO05D005349 9.9e-43 177.2 161 56.5
Solyc06g071460.3 Solanum lycopersicum HOM05D004647 ORTHO05D005349 1.7e-42 176.4 167 57.5
BolC3t21057H Brassica oleracea HOM05D004647 ORTHO05D005349 4.9e-42 174.9 168 56.0
BcaC01g01036 Brassica carinata HOM05D004647 ORTHO05D005349 6.4e-42 174.5 168 56.0
A08p18330 Brassica napus HOM05D004647 ORTHO05D005349 6.4e-42 174.5 168 56.0
BraA08t33790Z Brassica rapa HOM05D004647 ORTHO05D005349 6.4e-42 174.5 168 56.0
EL10Ac5g10752 Beta vulgaris HOM05D004647 ORTHO05D005349 1.4e-41 173.3 154 59.7
AUR62008215 Chenopodium quinoa HOM05D004647 ORTHO05D005349 3.2e-41 172.2 195 49.7
Thhalv10026115m.g Eutrema salsugineum HOM05D004647 ORTHO05D005349 3.2e-41 172.2 170 54.7
Sp7g29960 Schrenkiella parvula HOM05D004647 ORTHO05D005349 3.2e-41 172.2 170 55.9
unitig_52.g17486 Utricularia gibba HOM05D004647 ORTHO05D005349 3.2e-41 172.2 170 58.2
FAN18G2015 Fragaria x ananassa HOM05D004647 ORTHO05D005349 5.4e-41 171.4 217 48.4
TWI53G1063 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 5.4e-41 171.4 102 79.4
AT2G25355 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 1.2e-40 170.2 166 54.2
DCAR_028017 Daucus carota HOM05D004647 ORTHO05D005349 1.6e-40 169.9 103 78.6
BcaB03g12733 Brassica carinata HOM05D004647 ORTHO05D005349 2.1e-40 169.5 164 55.5
Ca_06453_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 2.1e-40 169.5 102 78.4
AL4G16790 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 3.5e-40 168.7 166 53.0
Nn3g16872 Nelumbo nucifera HOM05D004647 ORTHO05D005349 3.0e-39 165.6 136 62.5
MD06G1174500 Malus domestica HOM05D004647 ORTHO05D005349 3.9e-39 165.2 152 57.9
CARHR240100 Cardamine hirsuta HOM05D004647 ORTHO05D005349 8.7e-39 164.1 170 52.4
Peaxi162Scf00689g00228 Petunia axillaris HOM05D004647 ORTHO05D005349 1.1e-38 163.7 102 75.5
QL02p100995 Quercus lobata HOM05D004647 ORTHO05D005349 1.9e-38 162.9 100 78.0
SalBow3G4197 Salvia bowleyana HOM05D004647 ORTHO05D005349 4.3e-38 161.8 210 46.2
Carub.0007s0838 Capsella rubella HOM05D004647 ORTHO05D005349 1.7e-34 149.8 102 68.6
MELO3C026290.2 Cucumis melo HOM05D004647 ORTHO05D005349 2.1e-32 142.9 131 58.8
Zm00001eb359590 Zea mays HOM05D004647 ORTHO05D005349 7.9e-32 141.0 106 67.0
THA.LOC104815465 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 9.6e-30 134.0 81 76.5
Pp3c9_4960 Physcomitrium patens HOM05D004647 ORTHO05D005349 1.3e-29 133.7 162 42.6
Mapoly0033s0011 Marchantia polymorpha HOM05D004647 ORTHO05D005349 8.1e-29 131.0 171 41.5
SMO358G0755 Selaginella moellendorffii HOM05D004647 ORTHO05D005349 1.2e-27 127.1 156 41.0
VMungo1215G1703 Vigna mungo HOM05D004647 ORTHO05D005349 4.9e-26 121.7 124 53.2
Haze_07464 Corylus avellana HOM05D004647 ORTHO05D005349 9.3e-25 117.5 146 47.9
Aa31LG2G17760 Aethionema arabicum HOM05D004647 ORTHO05D005349 1.2e-24 117.1 140 47.9
SEGI_17588 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.3e-23 113.6 70 74.3
SEGI_39775 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.3e-23 113.6 70 74.3
Ca_24957_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 5.1e-23 111.7 106 56.6
AagrBONN_evm.TU.Sc2ySwM_117.3294 Anthoceros agrestis HOM05D004647 ORTHO05D005349 1.5e-22 110.2 101 49.5
Oeu005668.1 Olea europaea HOM05D004647 ORTHO05D005349 2.6e-19 99.4 66 66.7
Cre07.g319900 Chlamydomonas reinhardtii HOM05D004647 ORTHO05D005349 1.3e-18 97.1 101 44.6
Cc00_g25260 Coffea canephora HOM05D004647 ORTHO05D005349 1.7e-18 96.7 73 64.4
Cc00_g18100 Coffea canephora HOM05D004647 ORTHO05D005349 1.1e-17 94.0 82 57.3
Cc00_g33640 Coffea canephora HOM05D004647 ORTHO05D005349 4.2e-17 92.0 50 82.0
CSS0025503 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 7.1e-17 91.3 57 75.4
Sed0007118 Sechium edule HOM05D004647 ORTHO05D005349 9.3e-17 90.9 102 48.0
PRCOL_00002933 Prasinoderma coloniale HOM05D004647 ORTHO05D005349 2.7e-16 89.4 134 37.3
SEGI_09107 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 3.9e-15 85.5 62 66.1
QL02p101061 Quercus lobata HOM05D004647 ORTHO05D005349 9.7e-14 80.9 48 79.2
QL02p101105 Quercus lobata HOM05D004647 ORTHO05D005349 9.7e-14 80.9 48 79.2
Ca_07701_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 1.6e-13 80.1 48 79.2
VMungo1215G3307 Vigna mungo HOM05D004647 ORTHO05D005349 1.6e-13 80.1 47 80.9
Medtr5g009430 Medicago truncatula HOM05D004647 ORTHO05D005349 2.8e-13 79.3 48 77.1
CSS0039197 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 5.3e-12 75.1 81 53.1
Glyma.19G045000 Glycine max HOM05D004647 ORTHO05D005349 1.0e-10 70.9 48 70.8
Cfa024128 Carpinus fangiana HOM05D004647 ORTHO05D005349 2.9e-10 69.3 166 30.1
CAN.G110.1 Capsicum annuum HOM05D004647 ORTHO05D005349 1.1e-09 67.4 65 50.8
SEGI_26695 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.9e-09 66.6 152 28.3
QL02p027014 Quercus lobata HOM05D004647 ORTHO05D005349 9.4e-09 64.3 34 82.4
CBR_g61059 Chara braunii HOM05D004647 ORTHO05D005349 4.6e-08 62.0 147 32.0
QL02p024044 Quercus lobata HOM05D004647 ORTHO05D005349 1.4e-07 60.5 33 75.8


User provided reference genes

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