Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G4872 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1638.6 809 100.0
PSO832G2674 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1617.4 809 98.6
TAR626G1658 Trochodendron aralioides HOM05D004364 ORTHO05D006299 0.0e+00 1377.1 815 83.1
Aqoxy1G03944 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1344.3 807 81.8
GSVIVG01014465001 Vitis vinifera HOM05D004364 ORTHO05D006299 0.0e+00 1344.3 810 81.4
MD11G1234900 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1340.9 810 80.0
Nn1g06827 Nelumbo nucifera HOM05D004364 ORTHO05D006299 0.0e+00 1340.1 811 81.5
Prupe.4G192200 Prunus persica HOM05D004364 ORTHO05D006299 0.0e+00 1334.7 810 79.9
MD03G1217200 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1328.2 810 79.5
PGR083G1074 Punica granatum HOM05D004364 ORTHO05D006299 0.0e+00 1327.4 816 80.0
CANSAT11G0334 Cannabis sativa HOM05D004364 ORTHO05D006299 0.0e+00 1326.2 810 78.5
Atru.chr2.2938 Acer truncatum HOM05D004364 ORTHO05D006299 0.0e+00 1325.8 811 79.2
RcHm_v2.0_Chr5g0036241 Rosa chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1324.3 810 79.1
CSS0001646 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1319.7 811 80.0
FvH4_3g21160 Fragaria vesca HOM05D004364 ORTHO05D006299 0.0e+00 1317.8 811 78.2
TWI39G0400 Tripterygium wilfordii HOM05D004364 ORTHO05D006299 0.0e+00 1313.5 814 78.4
Manes.03G117700 Manihot esculenta HOM05D004364 ORTHO05D006299 0.0e+00 1313.1 808 79.3
Potri.001G408800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1312.4 809 79.5
Cfa020489 Carpinus fangiana HOM05D004364 ORTHO05D006299 0.0e+00 1311.6 815 78.3
Eucgr.F01066 Eucalyptus grandis HOM05D004364 ORTHO05D006299 0.0e+00 1311.2 816 79.7
Potri.011G125800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1310.0 807 79.4
Ciclev10007478m.g Citrus clementina HOM05D004364 ORTHO05D006299 0.0e+00 1309.7 811 78.2
FAN11G0387 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1308.1 815 77.5
Cpa.g.sc12.20 Carica papaya HOM05D004364 ORTHO05D006299 0.0e+00 1307.7 817 77.7
FAN16G3737 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1304.3 815 77.4
CiPaw.11G178500 Carya illinoinensis HOM05D004364 ORTHO05D006299 0.0e+00 1303.9 810 78.4
Gorai.004G028800 Gossypium raimondii HOM05D004364 ORTHO05D006299 0.0e+00 1300.8 813 78.7
Gohir.A08G020600 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1300.4 813 78.6
Duzib170G0088 Durio zibethinus HOM05D004364 ORTHO05D006299 0.0e+00 1300.0 813 78.2
FAN25G2975 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1300.0 815 77.3
Gohir.D08G031200 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1300.0 813 78.6
Sabra11G0111700 Salix brachista HOM05D004364 ORTHO05D006299 0.0e+00 1298.1 818 78.0
MELO3C018182.2 Cucumis melo HOM05D004364 ORTHO05D006299 0.0e+00 1297.3 808 77.6
CsaV3_3G044300 Cucumis sativus L. HOM05D004364 ORTHO05D006299 0.0e+00 1294.3 808 77.2
Thecc.07G069000 Theobroma cacao HOM05D004364 ORTHO05D006299 0.0e+00 1292.7 813 77.5
HanXRQChr13g0407291 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1289.6 806 77.7
THA.LOC104816919 Tarenaya hassleriana HOM05D004364 ORTHO05D006299 0.0e+00 1289.6 820 76.5
arahy.Tifrunner.gnm1.ann1.19RIMK Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1288.1 810 77.2
Sed0018829 Sechium edule HOM05D004364 ORTHO05D006299 0.0e+00 1284.6 809 76.3
TPR.G32881 Trifolium pratense HOM05D004364 ORTHO05D006299 0.0e+00 1282.3 807 77.4
Psat5g247520 Pisum sativum HOM05D004364 ORTHO05D006299 0.0e+00 1281.5 809 77.0
arahy.Tifrunner.gnm1.ann1.B7TU6S Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1280.0 810 77.0
Ca_01795_v3 Cicer arietinum L. HOM05D004364 ORTHO05D006299 0.0e+00 1279.6 803 77.2
Lalb_Chr06g0175311 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1279.6 809 77.4
Phvul.011G156100 Phaseolus vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1278.8 809 77.0
Hma1.2p1_0015F.1_g010280 Hydrangea macrophylla HOM05D004364 ORTHO05D006299 0.0e+00 1276.9 811 77.4
Glyma.12G146600 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1275.8 806 77.2
Solyc07g063650.4 Solanum lycopersicum HOM05D004364 ORTHO05D006299 0.0e+00 1273.8 806 77.0
Medtr2g081180 Medicago truncatula HOM05D004364 ORTHO05D006299 0.0e+00 1273.1 804 76.4
Sopen07g031830 Solanum pennellii HOM05D004364 ORTHO05D006299 0.0e+00 1269.2 806 76.7
Lalb_Chr02g0159341 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1268.4 808 76.6
Lj3g0027191 Lotus japonicus HOM05D004364 ORTHO05D006299 0.0e+00 1266.9 813 76.3
AT3G20630 Arabidopsis thaliana HOM05D004364 ORTHO05D006299 0.0e+00 1263.8 804 76.9
HanXRQChr03g0076071 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1263.4 805 76.8
ClCG11G018570 Citrullus lanatus HOM05D004364 ORTHO05D006299 0.0e+00 1261.9 889 70.1
AL3G34510 Arabidopsis lyrata HOM05D004364 ORTHO05D006299 0.0e+00 1261.1 804 76.9
Glyma.06G255000 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1258.8 808 76.1
Sc16g0006700 Simmondsia chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1258.0 814 75.6
Thhalv10020069m.g Eutrema salsugineum HOM05D004364 ORTHO05D006299 0.0e+00 1257.3 807 76.1
Sp3g18670 Schrenkiella parvula HOM05D004364 ORTHO05D006299 0.0e+00 1256.9 806 76.2
Aqoxy5G02435 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1255.7 811 77.2
CAN.G162.111 Capsicum annuum HOM05D004364 ORTHO05D006299 0.0e+00 1255.7 806 76.4
Cc05_g12790 Coffea canephora HOM05D004364 ORTHO05D006299 0.0e+00 1254.2 806 75.8
ECA240G1374 Erigeron canadensis HOM05D004364 ORTHO05D006299 0.0e+00 1252.3 795 76.0
FAN21G1304 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1250.3 811 75.5
BcaB04g19118 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1249.6 806 75.4
BcaC01g03545 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1249.6 806 75.6
A03p41850 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1249.6 806 75.7
C03p51230 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1249.6 806 75.6
C05p43630 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1247.6 806 75.4
DCAR_008692 Daucus carota HOM05D004364 ORTHO05D006299 0.0e+00 1247.6 800 76.1
A05p28190 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1246.9 806 75.1
Oeu060533.1 Olea europaea HOM05D004364 ORTHO05D006299 0.0e+00 1246.5 811 75.7
BolC3t17413H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1245.7 807 75.5
BraA03t13338Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1245.7 807 75.6
BraA05t21700Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1245.0 807 75.1
BolC5t33082H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1243.4 807 75.2
Nitab4.5_0001386g0060 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1243.0 806 75.1
MSTRG.12935 Avicennia marina HOM05D004364 ORTHO05D006299 0.0e+00 1240.3 807 74.7
BcaB06g26128 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1239.6 806 74.9
CARHR096430 Cardamine hirsuta HOM05D004364 ORTHO05D006299 0.0e+00 1239.6 806 75.3
Lj8C162G4 Lonicera japonica HOM05D004364 ORTHO05D006299 0.0e+00 1237.6 784 77.2
Haze_09550 Corylus avellana HOM05D004364 ORTHO05D006299 0.0e+00 1236.1 832 74.0
AUR62041167 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1232.2 820 73.9
Ah.04g165340 Amaranthus hybridus HOM05D004364 ORTHO05D006299 0.0e+00 1231.9 820 73.9
Migut.H01895 Erythranthe guttata HOM05D004364 ORTHO05D006299 0.0e+00 1230.7 807 73.9
BcaC05g28303 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1230.3 808 75.1
EL10Ac4g08041 Beta vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1228.4 813 73.8
AUR62029293 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1223.4 812 73.6
SEGI_22005 Sequoiadendron giganteum HOM05D004364 ORTHO05D006299 0.0e+00 1218.8 804 72.8
SalBow7G1127 Salvia bowleyana HOM05D004364 ORTHO05D006299 0.0e+00 1208.0 869 69.3
Aa31LG8G7430 Aethionema arabicum HOM05D004364 ORTHO05D006299 0.0e+00 1206.8 863 70.2
ATR1132G023 Amborella trichopoda HOM05D004364 ORTHO05D006299 0.0e+00 1204.5 859 69.6
HPP92_005995 Vanilla planifolia HOM05D004364 ORTHO05D006299 0.0e+00 1204.1 810 72.6
CDE01G0428 Ceratophyllum demersum HOM05D004364 ORTHO05D006299 0.0e+00 1197.2 825 72.8
Hund02178 Selenicereus undatus HOM05D004364 ORTHO05D006299 0.0e+00 1189.9 810 72.6
CSS0013066 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1189.1 811 74.0
SGA_v2.0_scaffold9G04963 Striga asiatica HOM05D004364 ORTHO05D006299 0.0e+00 1187.9 807 72.6
Zm00001eb336890 Zea mays HOM05D004364 ORTHO05D006299 0.0e+00 1186.4 811 71.4
Peaxi162Scf01216g00070 Petunia axillaris HOM05D004364 ORTHO05D006299 0.0e+00 1183.7 807 73.0
Os01g0177200 Oryza sativa ssp. japonica HOM05D004364 ORTHO05D006299 0.0e+00 1179.9 809 71.3
vmacro09573 Vaccinium macrocarpon HOM05D004364 ORTHO05D006299 0.0e+00 1171.8 911 66.2
Carub.0003s2061 Capsella rubella HOM05D004364 ORTHO05D006299 0.0e+00 1169.5 765 75.3
COL.COLO4_09498 Corchorus olitorius HOM05D004364 ORTHO05D006299 0.0e+00 1157.5 813 72.3
RhsimUnG0257500 Rhododendron simsii HOM05D004364 ORTHO05D006299 0.0e+00 1155.6 962 63.3
Nitab4.5_0000092g0270 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1154.8 806 71.5
QL08p017220 Quercus lobata HOM05D004364 ORTHO05D006299 0.0e+00 1125.2 967 61.5
Lsat_1_v5_gn_0_5341 Lactuca sativa HOM05D004364 ORTHO05D006299 0.0e+00 1124.0 781 70.7
Mapoly0028s0083 Marchantia polymorpha HOM05D004364 ORTHO05D006299 0.0e+00 1086.2 814 65.7
Nitab4.5_0000297g0190 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1084.3 807 67.5
Pp3c19_17130 Physcomitrium patens HOM05D004364 ORTHO05D006299 0.0e+00 1080.1 820 65.4
Dinv22351 Davidia involucrata HOM05D004364 ORTHO05D006299 1.0e-292 1010.0 605 81.3
Manes.15G081800 Manihot esculenta HOM05D004364 ORTHO05D006299 3.9e-292 1008.1 812 65.4
SMO347G0465 Selaginella moellendorffii HOM05D004364 ORTHO05D006299 2.2e-287 992.3 800 61.6
unitig_21.g20140 Utricularia gibba HOM05D004364 ORTHO05D006299 2.7e-277 958.7 804 61.4
TAR624G0100 Trochodendron aralioides HOM05D004364 ORTHO05D006299 3.6e-253 878.6 808 60.1
PRCOL_00003961 Prasinoderma coloniale HOM05D004364 ORTHO05D006299 3.3e-190 669.5 857 43.8
VMungo1127G0244 Vigna mungo HOM05D004364 ORTHO05D006299 3.0e-183 646.4 381 81.6
Haze_26164 Corylus avellana HOM05D004364 ORTHO05D006299 5.2e-167 592.4 830 40.8
Nitab4.5_0001252g0070 Nicotiana tabacum HOM05D004364 ORTHO05D006299 3.1e-156 556.6 807 42.8
Cre02.g080350 Chlamydomonas reinhardtii HOM05D004364 ORTHO05D006299 7.0e-148 528.9 946 35.0
MCO15G328 Micromonas commoda HOM05D004364 ORTHO05D006299 1.2e-144 518.1 849 38.2
CBR_g17932 Chara braunii HOM05D004364 ORTHO05D006299 1.6e-123 448.0 397 57.7
SHI10080 Sapria himalayana HOM05D004364 ORTHO05D006299 4.3e-113 413.3 320 65.0
TAR624G1198 Trochodendron aralioides HOM05D004364 ORTHO05D006299 1.7e-109 401.4 248 76.6
Lj1g0005584 Lotus japonicus HOM05D004364 ORTHO05D006299 1.7e-106 391.3 343 62.1
arahy.Tifrunner.gnm1.ann1.CZGD0C Arachis hypogaea HOM05D004364 ORTHO05D006299 2.1e-80 304.7 222 70.3
Peaxi162Scf00177g00118 Petunia axillaris HOM05D004364 ORTHO05D006299 2.5e-73 281.2 188 72.9
Actinidia35287 Actinidia chinensis HOM05D004364 ORTHO05D006299 2.7e-67 261.2 172 75.6
Sed0014921 Sechium edule HOM05D004364 ORTHO05D006299 5.9e-54 216.9 303 41.9
GSVIVG01015715001 Vitis vinifera HOM05D004364 ORTHO05D019261 6.5e-45 186.8 141 69.5
TPR.G1046 Trifolium pratense HOM05D004364 ORTHO05D019261 9.7e-41 172.9 191 56.0
DCAR_027147 Daucus carota HOM05D004364 ORTHO05D006299 5.3e-39 167.2 112 72.3
Rhsim03G0198500 Rhododendron simsii HOM05D004364 ORTHO05D006299 5.3e-39 167.2 90 85.6
GSVIVG01014461001 Vitis vinifera HOM05D004364 ORTHO05D006299 2.7e-38 164.9 102 76.5
Lj1g0002875 Lotus japonicus HOM05D004364 ORTHO05D236196 2.2e-37 161.8 270 41.9
SEGI_32785 Sequoiadendron giganteum HOM05D004364 ORTHO05D014012 8.8e-34 149.8 105 65.7
MD15G1178100 Malus domestica HOM05D004364 ORTHO05D246722 5.4e-31 140.6 182 46.7
SEGI_31233 Sequoiadendron giganteum HOM05D004364 ORTHO05D019261 3.5e-30 137.9 118 61.0
Pp3c21_16740 Physcomitrium patens HOM05D004364 ORTHO05D006299 3.3e-28 131.3 190 43.7
Medtr8g464880 Medicago truncatula HOM05D004364 ORTHO05D019261 3.6e-27 127.9 121 64.5
GSVIVG01015714001 Vitis vinifera HOM05D004364 ORTHO05D019261 6.8e-26 123.6 88 71.6
CBR_g76006 Chara braunii HOM05D004364 ORTHO05D006299 3.7e-24 117.9 117 49.6
Medtr4g077475 Medicago truncatula HOM05D004364 ORTHO05D006299 6.3e-24 117.1 260 32.3
GSVIVG01014462001 Vitis vinifera HOM05D004364 ORTHO05D019261 1.4e-23 115.9 80 70.0
Lj8A161G44 Lonicera japonica HOM05D004364 ORTHO05D006299 3.5e-22 111.3 171 42.1
Sabra16G0271600 Salix brachista HOM05D004364 ORTHO05D006299 1.5e-20 105.9 69 76.8
TAR624G0891 Trochodendron aralioides HOM05D000008 ORTHO05D000005 3.3e-20 104.8 97 59.8
SHI10079 Sapria himalayana HOM05D004364 ORTHO05D006299 1.2e-19 102.8 109 53.2
GSVIVG01015716001 Vitis vinifera HOM05D004364 ORTHO05D439286 1.2e-17 96.3 59 78.0
GSVIVG01014463001 Vitis vinifera HOM05D004364 ORTHO05D441130 2.0e-17 95.5 68 70.6
TAR011G0002 Trochodendron aralioides HOM05D004364 ORTHO05D019261 5.8e-17 94.0 149 46.3
Nn6g32117 Nelumbo nucifera HOM05D004364 ORTHO05D006299 2.9e-16 91.7 43 93.0
Nn8g40041 Nelumbo nucifera HOM05D004364 ORTHO05D006299 7.0e-15 87.0 50 82.0
Sed0011564 Sechium edule HOM05D000344 ORTHO05D003478 6.6e-13 80.5 439 23.0
Nn6g32116 Nelumbo nucifera HOM05D004364 ORTHO05D014012 4.7e-11 74.3 57 64.9
Lj1g0025632 Lotus japonicus HOM05D004364 ORTHO05D006299 1.1e-10 73.2 144 34.7
MD15G1178000 Malus domestica HOM05D004364 ORTHO05D006299 4.0e-10 71.2 59 50.8
Lj8A161T45 Lonicera japonica HOM05D004364 ORTHO05D019261 2.0e-09 68.9 68 61.8
CsaV3_4G036430 Cucumis sativus L. HOM05D000344 ORTHO05D003478 7.5e-09 67.0 440 22.0
Oeu019155.3 Olea europaea HOM05D003775 ORTHO05D004314 1.3e-08 66.2 274 25.9
PGR044G0522 Punica granatum HOM05D000344 ORTHO05D003478 6.4e-08 63.9 466 21.0
MELO3C016949.2 Cucumis melo HOM05D000344 ORTHO05D003478 1.9e-07 62.4 484 21.1
DCAR_000731 Daucus carota HOM05D000344 ORTHO05D003478 6.0e-06 57.4 408 20.8
Sabra16G0200100 Salix brachista HOM05D002747 ORTHO05D003069 6.0e-06 57.4 134 31.3


User provided reference genes

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