Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G4222 Papaver somniferum HOM05D001514 ORTHO05D005209 1.5e-121 439.5 219 100.0
PSO386G0176 Papaver somniferum HOM05D001514 ORTHO05D005209 2.9e-120 435.3 219 98.6
Nn8g38685 Nelumbo nucifera HOM05D001514 ORTHO05D005209 9.6e-92 340.5 219 74.4
Potri.006G143400 Populus trichocarpa HOM05D001514 ORTHO05D005209 5.8e-89 331.3 215 72.6
Thecc.09G079100 Theobroma cacao HOM05D001514 ORTHO05D005209 2.9e-88 328.9 217 71.4
TAR383G0900 Trochodendron aralioides HOM05D001514 ORTHO05D005209 2.9e-88 328.9 219 68.5
TAR626G0523 Trochodendron aralioides HOM05D001514 ORTHO05D005209 6.4e-88 327.8 219 69.9
TAR626G1304 Trochodendron aralioides HOM05D001514 ORTHO05D005209 6.4e-88 327.8 219 69.9
COL.COLO4_18112 Corchorus olitorius HOM05D001514 ORTHO05D005209 3.2e-87 325.5 217 71.0
MBI13_g11335_MAGBIO Magnolia biondii HOM05D001514 ORTHO05D005209 3.2e-87 325.5 219 69.4
Haze_10270 Corylus avellana HOM05D001514 ORTHO05D005209 9.3e-87 323.9 217 69.1
TWI60G0494 Tripterygium wilfordii HOM05D001514 ORTHO05D005209 1.2e-86 323.6 217 69.1
Manes.03G199800 Manihot esculenta HOM05D001514 ORTHO05D005209 2.7e-86 322.4 215 69.3
Eucgr.C00825 Eucalyptus grandis HOM05D001514 ORTHO05D005209 3.0e-85 318.9 225 66.7
CiPaw.03G207800 Carya illinoinensis HOM05D001514 ORTHO05D005209 3.9e-85 318.5 217 67.7
Prupe.7G201200 Prunus persica HOM05D001514 ORTHO05D005209 3.9e-85 318.5 217 66.8
ATR0598G338 Amborella trichopoda HOM05D001514 ORTHO05D005209 1.1e-84 317.0 219 68.9
Gohir.A13G191300 Gossypium hirsutum HOM05D001514 ORTHO05D005209 3.3e-84 315.5 217 66.8
CSS0005970 Camellia sinensis var. sinensis HOM05D001514 ORTHO05D005209 5.6e-84 314.7 215 67.0
QL11p000460 Quercus lobata HOM05D001514 ORTHO05D005209 7.3e-84 314.3 217 67.7
Atru.chr7.1692 Acer truncatum HOM05D001514 ORTHO05D005209 9.6e-84 313.9 219 66.7
GSVIVG01015097001 Vitis vinifera HOM05D001514 ORTHO05D005209 9.6e-84 313.9 218 67.0
EL10Ac8g19111 Beta vulgaris HOM05D001514 ORTHO05D005209 2.8e-83 312.4 218 65.6
Dinv42376 Davidia involucrata HOM05D001514 ORTHO05D005209 2.8e-83 312.4 218 66.1
Ciclev10012695m.g Citrus clementina HOM05D001514 ORTHO05D005209 6.2e-83 311.2 218 65.6
Cc06_g12020 Coffea canephora HOM05D001514 ORTHO05D005209 1.4e-82 310.1 218 66.1
Duzib168G1760 Durio zibethinus HOM05D001514 ORTHO05D005209 1.4e-82 310.1 217 67.3
Hma1.2p1_0928F.1_g237710 Hydrangea macrophylla HOM05D001514 ORTHO05D005209 2.4e-82 309.3 213 67.6
AUR62025186 Chenopodium quinoa HOM05D001514 ORTHO05D005209 3.1e-82 308.9 217 65.0
PGSC0003DMG400000323 Solanum tuberosum HOM05D001514 ORTHO05D005209 5.3e-82 308.1 219 65.8
Gohir.D13G196700 Gossypium hirsutum HOM05D001514 ORTHO05D005209 1.2e-81 307.0 217 65.9
Cpa.g.sc280.6 Carica papaya HOM05D001514 ORTHO05D005209 1.5e-81 306.6 217 65.9
Nitab4.5_0011363g0010 Nicotiana tabacum HOM05D001514 ORTHO05D005209 1.5e-81 306.6 218 65.1
Solyc12g009090.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.5e-81 306.6 219 65.3
Sopen12g004040 Solanum pennellii HOM05D001514 ORTHO05D005209 3.4e-81 305.4 219 65.3
Gorai.013G225400 Gossypium raimondii HOM05D001514 ORTHO05D005209 5.8e-81 304.7 217 65.4
CsaV3_2G001190 Cucumis sativus L. HOM05D001514 ORTHO05D005209 7.6e-81 304.3 218 65.6
ECA233G5402 Erigeron canadensis HOM05D001514 ORTHO05D005209 9.9e-81 303.9 218 63.3
Hund08725 Selenicereus undatus HOM05D001514 ORTHO05D005209 9.9e-81 303.9 214 64.0
Haze_25985 Corylus avellana HOM05D001514 ORTHO05D005209 2.9e-80 302.4 254 58.3
Haze_25993 Corylus avellana HOM05D001514 ORTHO05D005209 2.9e-80 302.4 254 58.3
MD15G1215700 Malus domestica HOM05D001514 ORTHO05D005209 3.8e-80 302.0 213 63.8
Sabra06G0113700 Salix brachista HOM05D001514 ORTHO05D005209 3.8e-80 302.0 243 63.0
HanXRQChr09g0237811 Helianthus annuus HOM05D001514 ORTHO05D005209 6.4e-80 301.2 217 64.1
MD15G1215800 Malus domestica HOM05D001514 ORTHO05D005209 1.1e-79 300.4 217 62.7
PGR142G1966 Punica granatum HOM05D001514 ORTHO05D005209 4.2e-79 298.5 218 64.2
Aqoxy7G01056 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 5.4e-79 298.1 221 64.3
Lsat_1_v5_gn_7_35041 Lactuca sativa HOM05D001514 ORTHO05D005209 5.4e-79 298.1 218 63.3
SGA_v2.0_scaffold97G29140 Striga asiatica HOM05D001514 ORTHO05D005209 9.3e-79 297.4 215 65.1
ClCG11G001470 Citrullus lanatus HOM05D001514 ORTHO05D005209 2.7e-78 295.8 236 61.0
Sed0009954 Sechium edule HOM05D001514 ORTHO05D005209 2.7e-78 295.8 218 65.1
THA.LOC104808891 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 3.5e-78 295.4 217 62.2
CDE05G2440 Ceratophyllum demersum HOM05D001514 ORTHO05D005209 7.9e-78 294.3 219 61.6
FvH4_1g08420 Fragaria vesca HOM05D001514 ORTHO05D005209 1.0e-77 293.9 217 60.8
Aa31sc437G10 Aethionema arabicum HOM05D001514 ORTHO05D005209 1.7e-77 293.1 217 62.7
MSTRG.6002 Avicennia marina HOM05D001514 ORTHO05D005209 3.0e-77 292.4 215 64.2
Thhalv10002659m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 1.1e-76 290.4 217 62.2
Migut.J00937 Erythranthe guttata HOM05D001514 ORTHO05D005209 3.3e-76 288.9 215 63.3
SalBow6G1458 Salvia bowleyana HOM05D001514 ORTHO05D005209 3.3e-76 288.9 215 62.3
AL4G21890 Arabidopsis lyrata HOM05D001514 ORTHO05D005209 1.3e-75 287.0 217 60.4
Nitab4.5_0000073g0250 Nicotiana tabacum HOM05D001514 ORTHO05D005209 1.3e-75 287.0 220 62.3
Sp4g11040 Schrenkiella parvula HOM05D001514 ORTHO05D005209 1.3e-75 287.0 217 61.3
Carub.0004s0911 Capsella rubella HOM05D001514 ORTHO05D005209 2.8e-75 285.8 217 60.8
RcHm_v2.0_Chr2g0094521 Rosa chinensis HOM05D001514 ORTHO05D005209 4.8e-75 285.0 217 61.3
Lj4g0013364 Lotus japonicus HOM05D001514 ORTHO05D005209 1.1e-74 283.9 221 61.1
BcaB02g10157 Brassica carinata HOM05D001514 ORTHO05D005209 4.0e-74 282.0 217 60.4
Aqoxy7G01057 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 9.0e-74 280.8 221 59.7
AT2G28230 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 9.0e-74 280.8 217 59.4
vmacro06328 Vaccinium macrocarpon HOM05D001514 ORTHO05D005209 9.0e-74 280.8 244 57.8
Ca_21314_v3 Cicer arietinum L. HOM05D001514 ORTHO05D005209 1.5e-73 280.0 217 59.0
BcaC02g10956 Brassica carinata HOM05D001514 ORTHO05D005209 4.5e-73 278.5 217 59.9
C04p23290 Brassica napus HOM05D001514 ORTHO05D005209 4.5e-73 278.5 217 59.9
MELO3C004649.2 Cucumis melo HOM05D001514 ORTHO05D005209 5.8e-73 278.1 217 61.8
Solyc05g041170.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.8e-73 278.1 215 59.1
Carub.0004s0910 Capsella rubella HOM05D001514 ORTHO05D005209 1.3e-72 276.9 217 57.6
Lj7A685T53 Lonicera japonica HOM05D001514 ORTHO05D005209 2.9e-72 275.8 260 53.1
SalBow3G1655 Salvia bowleyana HOM05D001514 ORTHO05D005209 2.9e-72 275.8 210 61.4
A07p18760 Brassica napus HOM05D001514 ORTHO05D005209 4.9e-72 275.0 217 59.4
Psat4g016720 Pisum sativum HOM05D001514 ORTHO05D005209 4.9e-72 275.0 218 58.3
THA.LOC104826585 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 1.1e-71 273.9 237 55.3
HPP92_009229 Vanilla planifolia HOM05D001514 ORTHO05D005209 2.4e-71 272.7 217 59.9
AUR62028988 Chenopodium quinoa HOM05D001514 ORTHO05D005209 9.3e-71 270.8 196 63.3
Glyma.17G050300 Glycine max HOM05D001514 ORTHO05D005209 2.7e-70 269.2 221 58.4
Phvul.003G131900 Phaseolus vulgaris HOM05D001514 ORTHO05D005209 4.6e-70 268.5 221 58.8
Nitab4.5_0001866g0080 Nicotiana tabacum HOM05D001514 ORTHO05D005209 6.0e-70 268.1 210 61.4
Glyma.13G109300 Glycine max HOM05D001514 ORTHO05D005209 1.3e-69 266.9 221 57.9
Lalb_Chr07g0181101 Lupinus albus HOM05D001514 ORTHO05D005209 1.3e-69 266.9 218 55.0
Medtr4g125510 Medicago truncatula HOM05D001514 ORTHO05D005209 1.8e-69 266.5 217 57.1
BolC4t23831H Brassica oleracea HOM05D001514 ORTHO05D005209 3.9e-69 265.4 212 58.5
arahy.Tifrunner.gnm1.ann1.0DN5L0 Arachis hypogaea HOM05D001514 ORTHO05D005209 6.7e-69 264.6 215 55.8
arahy.Tifrunner.gnm1.ann1.0TW07M Arachis hypogaea HOM05D001514 ORTHO05D005209 6.7e-69 264.6 215 55.8
arahy.Tifrunner.gnm1.ann1.I7BKR8 Arachis hypogaea HOM05D001514 ORTHO05D005209 6.7e-69 264.6 215 55.8
TPR.G9427 Trifolium pratense HOM05D001514 ORTHO05D005209 1.1e-68 263.8 219 55.7
AT4G09070 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 1.5e-68 263.5 217 55.8
BraA07t29585Z Brassica rapa HOM05D001514 ORTHO05D005209 1.5e-68 263.5 212 59.0
Os09g0443500 Oryza sativa ssp. japonica HOM05D001514 ORTHO05D005209 7.4e-68 261.2 227 56.4
Medtr2g063927 Medicago truncatula HOM05D001514 ORTHO05D005209 8.1e-67 257.7 217 55.3
Solyc10g054950.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.4e-66 256.1 214 55.6
Solyc10g049510.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.0e-66 255.4 215 54.0
VMungo1215G3125 Vigna mungo HOM05D001514 ORTHO05D005209 6.9e-66 254.6 204 58.3
Thhalv10017586m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 2.0e-65 253.1 217 56.2
Peaxi162Scf00928g00034 Petunia axillaris HOM05D001514 ORTHO05D005209 2.5e-63 246.1 213 56.3
Zm00001eb314270 Zea mays HOM05D001514 ORTHO05D005209 3.2e-63 245.7 221 53.8
Actinidia29922 Actinidia chinensis HOM05D001514 ORTHO05D005209 9.3e-63 244.2 182 62.6
Sabra06G0112300 Salix brachista HOM05D001514 ORTHO05D005209 2.7e-62 242.7 161 72.7
Mapoly0097s0017 Marchantia polymorpha HOM05D001514 ORTHO05D005209 1.0e-61 240.7 221 52.5
Carub.0006s2765 Capsella rubella HOM05D001514 ORTHO05D005209 1.2e-57 227.3 216 46.8
Solyc10g055100.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.0e-57 226.5 214 50.9
SMO141G0192 Selaginella moellendorffii HOM05D001514 ORTHO05D005209 2.6e-57 226.1 209 52.2
CANSAT11G2059 Cannabis sativa HOM05D001514 ORTHO05D005209 2.2e-56 223.0 158 63.3
Sc08g0008840 Simmondsia chinensis HOM05D001514 ORTHO05D005209 3.8e-56 222.2 159 66.0
Sc08g0009330 Simmondsia chinensis HOM05D001514 ORTHO05D005209 3.8e-56 222.2 159 66.0
Solyc10g055160.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 6.5e-56 221.5 187 54.5
CARHR121150 Cardamine hirsuta HOM05D001514 ORTHO05D005209 1.1e-55 220.7 217 50.2
FAN26G1993 Fragaria x ananassa HOM05D001514 ORTHO05D005209 3.2e-55 219.2 164 61.0
Rhsim03G0229200 Rhododendron simsii HOM05D001514 ORTHO05D005209 4.2e-55 218.8 162 63.0
DCAR_024739 Daucus carota HOM05D001514 ORTHO05D005209 2.1e-54 216.5 143 69.9
Solyc10g054980.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.3e-53 213.0 216 47.7
Actinidia38471 Actinidia chinensis HOM05D001514 ORTHO05D005209 4.3e-52 208.8 168 58.9
PGSC0003DMG400027872 Solanum tuberosum HOM05D001514 ORTHO05D005209 5.7e-52 208.4 180 52.2
Solyc10g055020.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 7.4e-52 208.0 221 46.6
FAN26G0729 Fragaria x ananassa HOM05D001514 ORTHO05D005209 1.3e-51 207.2 184 54.3
CAN.G1963.7 Capsicum annuum HOM05D001514 ORTHO05D005209 6.3e-51 204.9 168 57.1
Pp3c7_2780 Physcomitrium patens HOM05D001514 ORTHO05D005209 1.1e-50 204.1 219 46.6
Nitab4.5_0000073g0220 Nicotiana tabacum HOM05D001514 ORTHO05D005209 3.1e-50 202.6 143 67.1
DCAR_026438 Daucus carota HOM05D001514 ORTHO05D005209 6.9e-50 201.4 144 65.3
AagrBONN_evm.TU.Sc2ySwM_344.5098 Anthoceros agrestis HOM05D001514 ORTHO05D005209 7.7e-49 198.0 193 50.8
Psat0s2317g0240 Pisum sativum HOM05D001514 ORTHO05D005209 1.7e-48 196.8 213 45.1
PGSC0003DMG400024425 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.4e-45 187.2 171 52.0
Psat0s4474g0080 Pisum sativum HOM05D001514 ORTHO05D005209 6.7e-45 184.9 213 43.7
Sopen10g024920 Solanum pennellii HOM05D001514 ORTHO05D005209 1.5e-44 183.7 162 52.5
CAN.G2532.1 Capsicum annuum HOM05D001514 ORTHO05D005209 1.3e-43 180.6 160 51.9
CBR_g11153 Chara braunii HOM05D001514 ORTHO05D005209 1.7e-43 180.3 220 40.0
unitig_749.g14240 Utricularia gibba HOM05D001514 ORTHO05D005209 1.2e-41 174.1 145 59.3
Solyc10g055010.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.0e-41 173.3 145 55.2
CAN.G299.3 Capsicum annuum HOM05D001514 ORTHO05D005209 5.0e-40 168.7 118 67.8
Solyc10g055070.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 8.5e-40 167.9 170 47.1
PGSC0003DMG400040125 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.4e-39 167.2 201 41.3
CAN.G1774.14 Capsicum annuum HOM05D001514 ORTHO05D005209 1.3e-35 154.1 146 52.1
Manes.15G009400 Manihot esculenta HOM05D001514 ORTHO05D005209 6.3e-35 151.8 118 61.0
PGSC0003DMG400003348 Solanum tuberosum HOM05D001514 ORTHO05D005209 2.6e-33 146.4 122 55.7
Sopen10g024960 Solanum pennellii HOM05D001514 ORTHO05D005209 4.5e-33 145.6 122 55.7
Solyc10g055150.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 6.5e-32 141.7 135 51.1
Solyc10g049550.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.2e-31 139.0 131 49.6
MD02G1088400 Malus domestica HOM05D001514 ORTHO05D005209 7.2e-31 138.3 164 42.7
Solyc10g055130.2 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.7e-30 136.3 118 54.2
Sopen10g024890 Solanum pennellii HOM05D001514 ORTHO05D005209 3.5e-25 119.4 100 55.0
Sopen10g024880 Solanum pennellii HOM05D000004 ORTHO05D000002 6.3e-19 98.6 91 53.8
Potri.005G126902 Populus trichocarpa HOM05D001514 ORTHO05D005209 1.8e-18 97.1 73 67.1
Solyc10g055040.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 7.0e-18 95.1 145 37.9
DCAR_024738 Daucus carota HOM05D001514 ORTHO05D005209 2.9e-16 89.7 74 52.7
Rhsim03G0228900 Rhododendron simsii HOM05D001514 ORTHO05D005209 9.5e-15 84.7 53 69.8
CAN.G1963.4 Capsicum annuum HOM05D001514 ORTHO05D005209 6.1e-14 82.0 66 50.0
Sopen12g011120 Solanum pennellii HOM05D001514 ORTHO05D005209 1.0e-13 81.3 71 49.3
Oeu055661.2 Olea europaea HOM05D001514 ORTHO05D005209 2.3e-13 80.1 53 64.2
Cre11.g476900 Chlamydomonas reinhardtii HOM05D001514 ORTHO05D005209 7.0e-10 68.6 162 23.5
Solyc12g062270.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.5e-09 65.9 65 49.2
ECA233G2563 Erigeron canadensis HOM05D000517 ORTHO05D000751 1.7e-08 63.9 145 34.5
BcaC07g40291 Brassica carinata HOM05D001514 ORTHO05D005209 2.3e-08 63.5 55 56.4
C08p34050 Brassica napus HOM05D001514 ORTHO05D005209 2.3e-08 63.5 55 56.4
BolC8t51003H Brassica oleracea HOM05D001514 ORTHO05D005209 3.8e-08 62.8 54 57.4
AT2G28020 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 4.3e-07 59.3 66 40.9


User provided reference genes

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