Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G0624 Papaver somniferum HOM05D004152 ORTHO05D004878 3.3e-139 498.4 265 100.0
PSO210G4930 Papaver somniferum HOM05D004152 ORTHO05D004878 7.2e-126 454.1 266 92.9
Aqoxy7G00694 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 1.1e-89 334.0 263 68.8
Aqoxy7G00850 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 4.5e-88 328.6 263 69.6
DCAR_002274 Daucus carota HOM05D004152 ORTHO05D004878 6.6e-87 324.7 256 68.8
DCAR_008502 Daucus carota HOM05D004152 ORTHO05D004878 1.9e-86 323.2 258 69.4
CSS0047405 Camellia sinensis var. sinensis HOM05D004152 ORTHO05D004878 7.3e-86 321.2 183 84.7
Rhsim07G0110300 Rhododendron simsii HOM05D004152 ORTHO05D004878 2.0e-83 313.2 256 66.8
CANSAT21G2552 Cannabis sativa HOM05D004152 ORTHO05D004878 2.6e-83 312.8 255 69.0
Haze_18794 Corylus avellana HOM05D004152 ORTHO05D004878 7.5e-83 311.2 206 77.2
Nitab4.5_0000618g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 7.5e-83 311.2 239 69.0
MELO3C005518.2 Cucumis melo HOM05D004152 ORTHO05D004878 9.8e-83 310.8 251 68.1
Lj2C222T2 Lonicera japonica HOM05D004152 ORTHO05D004878 9.8e-83 310.8 262 67.2
ECA240G2077 Erigeron canadensis HOM05D004152 ORTHO05D004878 1.3e-82 310.5 230 69.6
ClCG01G004210 Citrullus lanatus HOM05D004152 ORTHO05D004878 3.7e-82 308.9 253 67.2
QL12p011587 Quercus lobata HOM05D004152 ORTHO05D004878 4.9e-82 308.5 259 67.6
PGSC0003DMG400024154 Solanum tuberosum HOM05D004152 ORTHO05D004878 6.4e-82 308.1 256 65.6
TWI81G0703 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 6.4e-82 308.1 178 83.7
AUR62007107 Chenopodium quinoa HOM05D004152 ORTHO05D004878 1.4e-81 307.0 254 66.1
Medtr4g011180 Medicago truncatula HOM05D004152 ORTHO05D004878 1.4e-81 307.0 256 66.8
Nitab4.5_0002881g0050 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.4e-81 307.0 259 65.6
Psat7g255640 Pisum sativum HOM05D004152 ORTHO05D004878 2.4e-81 306.2 260 65.4
Glyma.08G210500 Glycine max HOM05D004152 ORTHO05D004878 3.2e-81 305.8 216 73.6
Solyc06g060790.1 Solanum lycopersicum HOM05D004152 ORTHO05D004878 3.2e-81 305.8 259 65.6
Sopen06g020930 Solanum pennellii HOM05D004152 ORTHO05D004878 3.2e-81 305.8 258 65.9
TAR629G1833 Trochodendron aralioides HOM05D004152 ORTHO05D004878 3.2e-81 305.8 250 66.8
Migut.A01125 Erythranthe guttata HOM05D004152 ORTHO05D004878 4.1e-81 305.4 180 85.0
Gohir.A04G110300 Gossypium hirsutum HOM05D004152 ORTHO05D004878 5.4e-81 305.1 251 66.1
Gorai.012G137200 Gossypium raimondii HOM05D004152 ORTHO05D004878 5.4e-81 305.1 251 66.5
Sed0004379 Sechium edule HOM05D004152 ORTHO05D004878 5.4e-81 305.1 258 67.1
SalBow6G1227 Salvia bowleyana HOM05D004152 ORTHO05D004878 7.0e-81 304.7 182 81.3
Ca_20428_v3 Cicer arietinum L. HOM05D004152 ORTHO05D004878 1.2e-80 303.9 256 65.2
CsaV3_5G004400 Cucumis sativus L. HOM05D004152 ORTHO05D004878 1.2e-80 303.9 257 65.8
Glyma.07G032200 Glycine max HOM05D004152 ORTHO05D004878 1.2e-80 303.9 212 73.1
Thecc.02G150400 Theobroma cacao HOM05D004152 ORTHO05D004878 1.2e-80 303.9 219 72.1
VMungo0331G1163 Vigna mungo HOM05D004152 ORTHO05D004878 1.6e-80 303.5 259 63.7
AUR62019969 Chenopodium quinoa HOM05D004152 ORTHO05D004878 2.0e-80 303.1 261 63.6
HanXRQChr13g0417841 Helianthus annuus HOM05D004152 ORTHO05D004878 2.0e-80 303.1 243 68.3
Lj3g0007947 Lotus japonicus HOM05D004152 ORTHO05D004878 2.0e-80 303.1 256 66.4
Nn6g33894 Nelumbo nucifera HOM05D004152 ORTHO05D004878 2.0e-80 303.1 264 63.6
PGR031G2826 Punica granatum HOM05D004152 ORTHO05D004878 2.0e-80 303.1 190 77.4
HanXRQChr03g0088791 Helianthus annuus HOM05D004152 ORTHO05D004878 4.6e-80 302.0 254 65.4
Ah.12g054170 Amaranthus hybridus HOM05D004152 ORTHO05D004878 1.0e-79 300.8 249 67.1
Gohir.D04G150500 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.0e-79 300.8 251 65.7
Gohir.D04G150600 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.0e-79 300.8 251 65.7
CiPaw.16G091100 Carya illinoinensis HOM05D004152 ORTHO05D004878 1.7e-79 300.1 256 64.5
COL.COLO4_08312 Corchorus olitorius HOM05D004152 ORTHO05D004878 1.7e-79 300.1 261 65.9
MD04G1062100 Malus domestica HOM05D004152 ORTHO05D004878 3.0e-79 299.3 256 65.2
Manes.01G082700 Manihot esculenta HOM05D004152 ORTHO05D004878 3.0e-79 299.3 252 65.9
Sc10g0005540 Simmondsia chinensis HOM05D004152 ORTHO05D004878 3.0e-79 299.3 254 65.7
Lalb_Chr25g0279491 Lupinus albus HOM05D004152 ORTHO05D004878 3.9e-79 298.9 221 69.2
MD06G1055800 Malus domestica HOM05D004152 ORTHO05D004878 3.9e-79 298.9 255 64.7
arahy.Tifrunner.gnm1.ann1.Y2K32V Arachis hypogaea HOM05D004152 ORTHO05D004878 5.0e-79 298.5 182 79.7
SGA_v2.0_scaffold104G30172 Striga asiatica HOM05D004152 ORTHO05D004878 5.0e-79 298.5 236 69.1
THA.LOC104824129 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 5.0e-79 298.5 191 77.5
CAN.G62.23 Capsicum annuum HOM05D004152 ORTHO05D004878 6.6e-79 298.1 180 81.1
TWI60G0584 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 1.5e-78 297.0 206 73.8
AT2G43090 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 1.9e-78 296.6 215 71.2
Atru.chr9.1286 Acer truncatum HOM05D004152 ORTHO05D004878 3.3e-78 295.8 260 62.3
arahy.Tifrunner.gnm1.ann1.HAI1EF Arachis hypogaea HOM05D004152 ORTHO05D004878 4.3e-78 295.4 240 66.7
Cfa019694 Carpinus fangiana HOM05D004152 ORTHO05D004878 4.3e-78 295.4 258 65.1
Duzib052G0353 Durio zibethinus HOM05D004152 ORTHO05D004878 4.3e-78 295.4 263 63.1
Phvul.010G153800 Phaseolus vulgaris HOM05D004152 ORTHO05D004878 4.3e-78 295.4 259 62.9
Prupe.5G066300 Prunus persica HOM05D004152 ORTHO05D004878 4.3e-78 295.4 254 64.2
Sabra03G0074600 Salix brachista HOM05D004152 ORTHO05D004878 4.3e-78 295.4 262 62.6
AL4G41740 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 9.5e-78 294.3 215 70.7
MSTRG.12117 Avicennia marina HOM05D004152 ORTHO05D004878 9.5e-78 294.3 260 64.2
FAN13G0727 Fragaria x ananassa HOM05D004152 ORTHO05D004878 9.5e-78 294.3 259 63.7
BraA03t11610Z Brassica rapa HOM05D004152 ORTHO05D004878 2.1e-77 293.1 258 63.2
Cpa.g.sc29.188 Carica papaya HOM05D004152 ORTHO05D004878 2.1e-77 293.1 261 61.7
C03p28570 Brassica napus HOM05D004152 ORTHO05D004878 2.8e-77 292.7 258 63.6
FAN04G2897 Fragaria x ananassa HOM05D004152 ORTHO05D004878 2.8e-77 292.7 256 62.9
FAN18G1702 Fragaria x ananassa HOM05D004152 ORTHO05D004878 2.8e-77 292.7 261 63.2
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 2.8e-77 292.7 221 68.8
Potri.003G107800 Populus trichocarpa HOM05D004152 ORTHO05D004878 2.8e-77 292.7 260 61.9
unitig_899.g15440 Utricularia gibba HOM05D004152 ORTHO05D004878 2.8e-77 292.7 218 70.6
A03p23950 Brassica napus HOM05D004152 ORTHO05D004878 3.6e-77 292.4 247 65.6
Ciclev10021871m.g Citrus clementina HOM05D004152 ORTHO05D004878 3.6e-77 292.4 194 73.7
BolC3t15222H Brassica oleracea HOM05D004152 ORTHO05D004878 4.7e-77 292.0 248 64.5
FAN08G2273 Fragaria x ananassa HOM05D004152 ORTHO05D004878 4.7e-77 292.0 259 64.1
Oeu040710.1 Olea europaea HOM05D004152 ORTHO05D004878 1.8e-76 290.0 261 64.4
CARHR169370 Cardamine hirsuta HOM05D004152 ORTHO05D004878 2.3e-76 289.7 241 66.4
FvH4_5g19250 Fragaria vesca HOM05D004152 ORTHO05D004878 2.3e-76 289.7 261 62.8
Carub.0004s2557 Capsella rubella HOM05D004152 ORTHO05D004878 3.1e-76 289.3 249 63.9
Gorai.005G214700 Gossypium raimondii HOM05D004152 ORTHO05D004878 6.8e-76 288.1 258 62.0
Sp4g25220 Schrenkiella parvula HOM05D004152 ORTHO05D004878 6.8e-76 288.1 215 68.8
BraA05t19344Z Brassica rapa HOM05D004152 ORTHO05D004878 1.5e-75 287.0 263 60.8
AT3G58990 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 2.6e-75 286.2 234 68.4
CARHR138160 Cardamine hirsuta HOM05D004152 ORTHO05D004878 2.6e-75 286.2 264 62.1
Aa31LG10G13480 Aethionema arabicum HOM05D004152 ORTHO05D004878 3.4e-75 285.8 240 66.2
EL10Ac5g12362 Beta vulgaris HOM05D004152 ORTHO05D004878 3.4e-75 285.8 256 62.5
SEGI_19785 Sequoiadendron giganteum HOM05D004152 ORTHO05D004878 5.8e-75 285.0 225 67.6
Thhalv10017142m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 9.8e-75 284.3 264 61.4
BolC4t22054H Brassica oleracea HOM05D004152 ORTHO05D004878 1.7e-74 283.5 266 60.5
Lj8A264G55 Lonicera japonica HOM05D004152 ORTHO05D004878 1.7e-74 283.5 172 82.6
Carub.0005s2573 Capsella rubella HOM05D004152 ORTHO05D004878 2.2e-74 283.1 190 75.3
Carub.0002s0595 Capsella rubella HOM05D004152 ORTHO05D004878 3.7e-74 282.3 197 73.6
Gohir.D02G191900 Gossypium hirsutum HOM05D004152 ORTHO05D004878 4.9e-74 282.0 255 61.6
AL5G40810 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 8.3e-74 281.2 250 63.2
BcaC02g12415 Brassica carinata HOM05D004152 ORTHO05D004878 8.3e-74 281.2 258 62.0
Hund14573 Selenicereus undatus HOM05D004152 ORTHO05D004878 1.1e-73 280.8 195 74.4
CARHR169410 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.2e-72 277.3 263 62.0
BcaNung03538 Brassica carinata HOM05D004152 ORTHO05D004878 2.7e-72 276.2 262 58.8
THA.LOC104803472 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 1.0e-71 274.2 241 64.3
Os02g0655300 Oryza sativa ssp. japonica HOM05D004152 ORTHO05D004878 1.3e-71 273.9 182 73.1
CDE11G0751 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 1.7e-71 273.5 239 63.2
Sp4g25230 Schrenkiella parvula HOM05D004152 ORTHO05D004878 2.3e-71 273.1 261 61.7
Peaxi162Scf01022g00023 Petunia axillaris HOM05D004152 ORTHO05D004878 1.1e-70 270.8 251 61.4
BcaNung03539 Brassica carinata HOM05D004152 ORTHO05D004878 1.5e-70 270.4 261 60.2
Thhalv10017125m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 3.3e-70 269.2 260 60.8
BcaB01g01073 Brassica carinata HOM05D004152 ORTHO05D004878 4.3e-70 268.9 220 65.0
Zm00001eb249330 Zea mays HOM05D004152 ORTHO05D004878 5.6e-70 268.5 213 65.7
Lsat_1_v5_gn_6_92521 Lactuca sativa HOM05D004152 ORTHO05D004878 1.6e-69 266.9 265 60.0
Mapoly0001s0104 Marchantia polymorpha HOM05D004152 ORTHO05D004878 1.6e-69 266.9 196 66.3
Aa31LG1G24900 Aethionema arabicum HOM05D004152 ORTHO05D004878 2.1e-69 266.5 227 63.4
Actinidia10839 Actinidia chinensis HOM05D004152 ORTHO05D004878 2.8e-69 266.2 163 78.5
A05p03590 Brassica napus HOM05D004152 ORTHO05D004878 6.2e-69 265.0 254 59.8
BraA05t19345Z Brassica rapa HOM05D004152 ORTHO05D004878 6.2e-69 265.0 254 59.8
ATR0693G400 Amborella trichopoda HOM05D004152 ORTHO05D004878 1.4e-68 263.8 213 69.5
C04p04150 Brassica napus HOM05D004152 ORTHO05D004878 1.8e-68 263.5 259 60.6
BolC4t22055H Brassica oleracea HOM05D004152 ORTHO05D004878 1.8e-68 263.5 259 60.6
BcaC02g12414 Brassica carinata HOM05D004152 ORTHO05D004878 2.3e-68 263.1 259 60.6
AL4G41750 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 4.0e-68 262.3 242 61.2
CARHR138170 Cardamine hirsuta HOM05D004152 ORTHO05D004878 4.0e-68 262.3 240 61.7
Pp3c1_29090 Physcomitrium patens HOM05D004152 ORTHO05D004878 4.4e-67 258.8 179 68.7
AT2G43100 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 5.8e-67 258.5 259 58.3
Aa31LG1G24910 Aethionema arabicum HOM05D004152 ORTHO05D004878 1.3e-66 257.3 258 57.4
SMO274G0039 Selaginella moellendorffii HOM05D004152 ORTHO05D004878 1.3e-66 257.3 188 66.5
Pp3c14_19120 Physcomitrium patens HOM05D004152 ORTHO05D004878 2.2e-66 256.5 179 67.6
Dinv39162 Davidia involucrata HOM05D004152 ORTHO05D004878 2.7e-64 249.6 149 81.2
Cre06.g252650 Chlamydomonas reinhardtii HOM05D004152 ORTHO05D004878 3.5e-64 249.2 176 66.5
AagrBONN_evm.TU.Sc2ySwM_228.3330 Anthoceros agrestis HOM05D004152 ORTHO05D004878 4.6e-64 248.8 261 53.3
Carub.0004s2558 Capsella rubella HOM05D004152 ORTHO05D004878 1.7e-63 246.9 257 56.0
BcaC01g05264 Brassica carinata HOM05D004152 ORTHO05D004878 2.5e-62 243.0 246 57.7
CDE11G0227 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 1.8e-60 236.9 150 77.3
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.8e-60 236.9 202 61.9
Cc08_g12220 Coffea canephora HOM05D004152 ORTHO05D004878 5.6e-54 215.3 144 76.4
HPP92_020921 Vanilla planifolia HOM05D004152 ORTHO05D004878 8.1e-53 211.5 190 57.4
Gohir.A03G168700 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.8e-52 210.3 258 50.4
SHI09309 Sapria himalayana HOM05D004152 ORTHO05D004878 4.0e-52 209.1 130 74.6
Dinv21650 Davidia involucrata HOM05D004152 ORTHO05D004878 9.0e-52 208.0 120 85.0
Nitab4.5_0002372g0010 Nicotiana tabacum HOM05D004152 ORTHO05D004878 2.1e-48 196.8 118 83.1
EL10Ac5g12363 Beta vulgaris HOM05D004152 ORTHO05D004878 3.3e-46 189.5 226 47.8
Lj8A267T12 Lonicera japonica HOM05D004152 ORTHO05D004878 3.3e-46 189.5 258 47.3
Actinidia31515 Actinidia chinensis HOM05D004152 ORTHO05D004878 1.4e-44 184.1 145 66.2
SalBow1G7183 Salvia bowleyana HOM05D004152 ORTHO05D004878 1.4e-44 184.1 204 52.5
Lj8A266T18 Lonicera japonica HOM05D004152 ORTHO05D004878 5.8e-43 178.7 258 46.5
Rhsim05G0121600 Rhododendron simsii HOM05D004152 ORTHO05D004878 6.4e-42 175.3 149 65.1
TPR.G10893 Trifolium pratense HOM05D004152 ORTHO05D004878 8.4e-42 174.9 125 74.4
Ah.12g054180 Amaranthus hybridus HOM05D004152 ORTHO05D004878 4.2e-41 172.6 205 47.3
Carub.0005s2576 Capsella rubella HOM05D004152 ORTHO05D004878 1.3e-39 167.5 217 49.3
Oeu047732.1 Olea europaea HOM05D004152 ORTHO05D004878 3.9e-39 166.0 262 46.2
Sed0021243 Sechium edule HOM05D004152 ORTHO05D004878 4.8e-37 159.1 166 56.6
BcaB05g25308 Brassica carinata HOM05D004152 ORTHO05D004878 3.5e-32 142.9 169 52.1
Lsat_1_v5_gn_7_1160 Lactuca sativa HOM05D004152 ORTHO05D004878 4.8e-29 132.5 75 82.7
A05p03570 Brassica napus HOM05D000373 ORTHO05D007048 2.4e-28 130.2 78 79.5
C04p04140 Brassica napus HOM05D000373 ORTHO05D007048 9.0e-28 128.3 78 78.2
AUR62007106 Chenopodium quinoa HOM05D004152 ORTHO05D004878 1.9e-25 120.6 114 57.0
SalBow1G0783 Salvia bowleyana HOM05D001430 ORTHO05D004878 3.9e-23 112.8 104 54.8
Lsat_1_v5_gn_5_55401 Lactuca sativa HOM05D004152 ORTHO05D004878 2.5e-22 110.2 104 59.6
Rhsim03G0103100 Rhododendron simsii HOM05D004152 ORTHO05D004878 7.4e-22 108.6 89 64.0
ATR0693G063 Amborella trichopoda HOM05D004152 ORTHO05D004878 1.3e-21 107.8 122 51.6
Ah.14g083550 Amaranthus hybridus HOM05D004152 ORTHO05D004878 6.3e-13 79.0 51 74.5
COL.COLO4_34273 Corchorus olitorius HOM05D004152 ORTHO05D004878 1.3e-10 71.2 167 34.1
PRCOL_00005264 Prasinoderma coloniale HOM05D003112 ORTHO05D003660 1.7e-10 70.9 156 31.4
Cfa024802 Carpinus fangiana HOM05D003112 ORTHO05D003660 6.5e-10 68.9 133 37.6
GSVIVG01007403001 Vitis vinifera HOM05D004152 ORTHO05D004878 6.5e-10 68.9 213 32.9
CsaV3_5G004360 Cucumis sativus L. HOM05D004152 ORTHO05D004878 1.1e-09 68.2 54 63.0
MCO01G562 Micromonas commoda HOM05D003112 ORTHO05D003660 1.1e-09 68.2 133 36.8
BcaB01g00650 Brassica carinata HOM05D004152 ORTHO05D004878 1.6e-08 64.3 54 55.6
A03p23960 Brassica napus HOM05D004152 ORTHO05D004878 1.0e-07 61.6 49 67.3
C03p28580 Brassica napus HOM05D004152 ORTHO05D004878 6.7e-07 58.9 64 45.3
Ca_28701_v3 Cicer arietinum L. HOM05D004152 ORTHO05D003660 2.6e-06 57.0 102 37.3
BcaC01g01539 Brassica carinata HOM05D004152 ORTHO05D004878 7.4e-06 55.5 60 48.3


User provided reference genes

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