Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G4344 Papaver somniferum HOM05D005626 ORTHO05D007372 2.7e-223 778.9 571 100.0
PSO063G0511 Papaver somniferum HOM05D005626 ORTHO05D007372 6.6e-209 731.1 516 96.7
MBI07_g24765_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 3.2e-115 419.9 554 54.7
Manes.06G012351 Manihot esculenta HOM05D005626 ORTHO05D007372 1.2e-106 391.3 573 52.4
Dinv29256 Davidia involucrata HOM05D005626 ORTHO05D007372 3.6e-106 389.8 580 61.6
Atru.chr12.2245_Atru.chr12.2244 Acer truncatum HOM05D005626 ORTHO05D007372 1.0e-105 388.3 531 56.7
TAR375G0360 Trochodendron aralioides HOM05D005626 ORTHO05D007372 7.7e-101 372.1 579 54.4
Nn1g00302 Nelumbo nucifera HOM05D005626 ORTHO05D007372 4.2e-99 366.3 545 59.4
EL10Ac3g05260 Beta vulgaris HOM05D005626 ORTHO05D007372 7.5e-96 355.5 545 58.2
Potri.015G010800 Populus trichocarpa HOM05D005626 ORTHO05D007372 1.7e-95 354.4 539 61.2
Sabra15G0008900 Salix brachista HOM05D005626 ORTHO05D007372 5.9e-93 345.9 487 66.3
Migut.F00199 Erythranthe guttata HOM05D005626 ORTHO05D007372 1.9e-91 340.9 536 51.5
Oeu010695.1 Olea europaea HOM05D005626 ORTHO05D007372 5.6e-91 339.3 476 52.9
Eucgr.A01448 Eucalyptus grandis HOM05D005626 ORTHO05D007372 6.1e-90 335.9 479 59.9
CDE02G3804 Ceratophyllum demersum HOM05D005626 ORTHO05D007372 8.0e-90 335.5 467 55.9
Cc02_g01370 Coffea canephora HOM05D005626 ORTHO05D007372 4.0e-89 333.2 473 47.1
Actinidia18659 Actinidia chinensis HOM05D005626 ORTHO05D007372 3.4e-88 330.1 578 49.7
Nitab4.5_0005491g0050 Nicotiana tabacum HOM05D005626 ORTHO05D007372 1.3e-87 328.2 492 54.9
FAN10G2571 Fragaria x ananassa HOM05D005626 ORTHO05D007372 2.2e-87 327.4 542 61.6
Peaxi162Scf00740g00226 Petunia axillaris HOM05D005626 ORTHO05D007372 3.7e-87 326.6 472 57.6
Sopen03g022800 Solanum pennellii HOM05D005626 ORTHO05D007372 8.3e-87 325.5 514 52.1
CsaV3_5G000430 Cucumis sativus L. HOM05D005626 ORTHO05D007372 2.4e-86 323.9 547 62.0
Lj8A623T21 Lonicera japonica HOM05D005626 ORTHO05D007372 2.4e-86 323.9 417 67.4
CANSAT21G0821 Cannabis sativa HOM05D005626 ORTHO05D007372 3.2e-86 323.6 519 48.0
Solyc03g082990.3 Solanum lycopersicum HOM05D005626 ORTHO05D007372 3.2e-86 323.6 514 51.9
ClCG01G000360 Citrullus lanatus HOM05D005626 ORTHO05D007372 9.2e-86 322.0 553 61.7
Manes.06G011400 Manihot esculenta HOM05D005626 ORTHO05D007372 5.0e-84 316.2 455 55.2
MELO3C005892.2 Cucumis melo HOM05D005626 ORTHO05D007372 6.6e-84 315.8 474 68.1
GSVIVG01038569001 Vitis vinifera HOM05D005626 ORTHO05D007372 8.6e-84 315.5 535 49.0
Aqoxy5G04311 Aquilegia oxysepala HOM05D005626 ORTHO05D007372 1.1e-83 315.1 577 53.2
CAN.G481.28 Capsicum annuum HOM05D005626 ORTHO05D007372 2.5e-83 313.9 511 50.5
CSS0044766 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 1.2e-82 311.6 543 53.6
QL09p007984 Quercus lobata HOM05D005626 ORTHO05D007372 3.6e-82 310.1 537 55.3
HPP92_005288 Vanilla planifolia HOM05D005626 ORTHO05D007372 1.9e-78 297.7 398 54.3
Thecc.03G201200 Theobroma cacao HOM05D005626 ORTHO05D007372 1.2e-77 295.0 582 49.0
Hma1.2p1_2307F.1_g319430 Hydrangea macrophylla HOM05D005626 ORTHO05D007372 2.7e-77 293.9 573 53.9
FAN06G4319 Fragaria x ananassa HOM05D005626 ORTHO05D007372 8.6e-76 288.9 542 54.2
FvH4_7g31990 Fragaria vesca HOM05D005626 ORTHO05D007372 1.9e-75 287.7 542 54.1
Ciclev10020013m.g Citrus clementina HOM05D005626 ORTHO05D007372 3.3e-75 287.0 472 57.4
Cfa016215 Carpinus fangiana HOM05D005626 ORTHO05D007372 2.1e-74 284.3 533 44.7
Prupe.2G313200 Prunus persica HOM05D005626 ORTHO05D007372 4.0e-73 280.0 520 46.2
MD01G1222800 Malus domestica HOM05D005626 ORTHO05D007372 5.2e-73 279.6 580 46.0
Sed0007830 Sechium edule HOM05D005626 ORTHO05D007372 5.2e-73 279.6 561 58.1
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 6.8e-73 279.3 535 38.7
PGR042G1168 Punica granatum HOM05D005626 ORTHO05D007372 8.9e-73 278.9 546 50.7
CiPaw.06G045100 Carya illinoinensis HOM05D005626 ORTHO05D007372 1.2e-72 278.5 535 51.8
Ah.07g205460 Amaranthus hybridus HOM05D005626 ORTHO05D007372 4.4e-72 276.6 585 49.2
TWI39G0896 Tripterygium wilfordii HOM05D005626 ORTHO05D007372 4.4e-72 276.6 534 54.3
CSS0003989 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 5.8e-72 276.2 609 39.2
AT5G53080 Arabidopsis thaliana HOM05D005626 ORTHO05D007372 1.7e-71 274.6 533 51.8
VMungo1309G2515 Vigna mungo HOM05D005626 ORTHO05D007372 1.7e-71 274.6 470 56.2
Phvul.009G051300 Phaseolus vulgaris HOM05D005626 ORTHO05D007372 2.2e-71 274.2 530 58.5
Hma1.2p1_0591F.1_g185250 Hydrangea macrophylla HOM05D005626 ORTHO05D007372 1.1e-70 271.9 555 53.3
RcHm_v2.0_Chr1g0381501 Rosa chinensis HOM05D005626 ORTHO05D007372 1.9e-70 271.2 516 52.9
AUR62006074 Chenopodium quinoa HOM05D005626 ORTHO05D007372 3.2e-70 270.4 508 43.7
THA.LOC104799967 Tarenaya hassleriana HOM05D005626 ORTHO05D007372 3.2e-70 270.4 533 42.4
Ca_16720_v3 Cicer arietinum L. HOM05D005626 ORTHO05D007372 7.1e-70 269.2 529 54.8
HanXRQChr15g0485681 Helianthus annuus HOM05D005626 ORTHO05D007372 4.6e-69 266.5 533 57.4
Lalb_Chr08g0240121 Lupinus albus HOM05D005626 ORTHO05D007372 4.6e-69 266.5 491 54.0
COL.COLO4_16792 Corchorus olitorius HOM05D005626 ORTHO05D007032 6.0e-69 266.2 518 53.3
Glyma.04G234300 Glycine max HOM05D005626 ORTHO05D007372 5.1e-68 263.1 531 56.3
Medtr3g091780 Medicago truncatula HOM05D005626 ORTHO05D007372 8.6e-68 262.3 525 57.0
CARHR266100 Cardamine hirsuta HOM05D005626 ORTHO05D007372 3.3e-67 260.4 530 52.1
unitig_92.g28249 Utricularia gibba HOM05D005626 ORTHO05D007372 4.3e-67 260.0 483 46.4
AL8G27710 Arabidopsis lyrata HOM05D005626 ORTHO05D007372 7.3e-67 259.2 535 50.3
Gohir.D09G179900 Gossypium hirsutum HOM05D005626 ORTHO05D007372 2.1e-66 257.7 533 45.2
Lj1g0019302 Lotus japonicus HOM05D005626 ORTHO05D007372 4.7e-66 256.5 528 48.3
Carub.0008s1328 Capsella rubella HOM05D005626 ORTHO05D007372 8.1e-66 255.8 533 50.8
Hund11648 Selenicereus undatus HOM05D005626 ORTHO05D007372 1.1e-65 255.4 582 41.1
TPR.G33639 Trifolium pratense HOM05D005626 ORTHO05D007372 1.4e-65 255.0 526 47.5
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 1.8e-65 254.6 528 50.6
AUR62035551 Chenopodium quinoa HOM05D005626 ORTHO05D007372 5.2e-65 253.1 591 37.6
Duzib084G0104 Durio zibethinus HOM05D005626 ORTHO05D007372 5.2e-65 253.1 582 48.1
Gorai.006G201900 Gossypium raimondii HOM05D005626 ORTHO05D007372 5.2e-65 253.1 613 42.9
arahy.Tifrunner.gnm1.ann1.ULB6CG Arachis hypogaea HOM05D005626 ORTHO05D007372 8.9e-65 252.3 572 39.5
Thhalv10013148m.g Eutrema salsugineum HOM05D005626 ORTHO05D007372 8.9e-65 252.3 469 55.0
Psat5g076080 Pisum sativum HOM05D005626 ORTHO05D007372 8.9e-65 252.3 527 51.4
SalBow4G1489 Salvia bowleyana HOM05D005626 ORTHO05D007372 8.9e-65 252.3 542 41.0
MBI07_g43862_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 2.6e-64 250.8 432 39.4
MSTRG.27018 Avicennia marina HOM05D005626 ORTHO05D007372 3.4e-64 250.4 455 52.1
Sp6g15250 Schrenkiella parvula HOM05D005626 ORTHO05D007372 4.4e-64 250.0 533 50.8
QL09p008055 Quercus lobata HOM05D005626 ORTHO05D007372 1.7e-63 248.1 493 36.7
arahy.Tifrunner.gnm1.ann1.CHU3M4 Arachis hypogaea HOM05D005626 ORTHO05D007372 2.4e-62 244.2 525 45.0
BolC2t08014H Brassica oleracea HOM05D005626 ORTHO05D007372 2.4e-62 244.2 519 53.0
C02p18690 Brassica napus HOM05D005626 ORTHO05D007372 4.1e-62 243.4 518 52.5
Cpa.g.sc3.101 Carica papaya HOM05D005626 ORTHO05D007372 4.1e-62 243.4 545 48.6
Haze_00226 Corylus avellana HOM05D005626 ORTHO05D007372 7.1e-62 242.7 417 50.6
Lsat_1_v5_gn_9_49841 Lactuca sativa HOM05D005626 ORTHO05D007372 1.6e-61 241.5 529 47.6
BraA02t06193Z Brassica rapa HOM05D005626 ORTHO05D007372 2.3e-60 237.7 471 54.4
A02p11310 Brassica napus HOM05D005626 ORTHO05D007372 4.3e-59 233.4 471 53.9
BcaC03g14458 Brassica carinata HOM05D005626 ORTHO05D007372 3.6e-58 230.3 474 54.9
DCAR_010593 Daucus carota HOM05D005626 ORTHO05D007372 1.1e-57 228.8 178 65.2
ATR0730G125 Amborella trichopoda HOM05D005626 ORTHO05D007372 1.4e-57 228.4 344 60.8
arahy.Tifrunner.gnm1.ann1.DCMH6Q Arachis hypogaea HOM05D005626 ORTHO05D007372 1.2e-56 225.3 452 44.7
Sc25g0000940 Simmondsia chinensis HOM05D005626 ORTHO05D007372 1.2e-56 225.3 425 48.7
arahy.Tifrunner.gnm1.ann1.1DU7LF Arachis hypogaea HOM05D005626 ORTHO05D007372 4.2e-54 216.9 535 37.2
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 4.2e-54 216.9 433 52.2
ECA232G0910 Erigeron canadensis HOM05D005626 ORTHO05D007372 1.6e-53 214.9 531 48.6
CSS0000100 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 1.0e-52 212.2 518 38.0
PGSC0003DMG400018528 Solanum tuberosum HOM05D005626 ORTHO05D007372 6.6e-52 209.5 211 64.0
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 3.1e-49 200.7 531 31.3
BcaB05g22007 Brassica carinata HOM05D005626 ORTHO05D007372 4.5e-48 196.8 549 40.8
Manes.06G012101 Manihot esculenta HOM05D005626 ORTHO05D007372 3.8e-47 193.7 194 54.1
Gohir.A09G185000 Gossypium hirsutum HOM05D005626 ORTHO05D007372 2.1e-45 188.0 296 58.1
FAN10G0040 Fragaria x ananassa HOM05D005626 ORTHO05D009683 1.9e-43 181.4 472 30.5
Lj1A1021T49 Lonicera japonica HOM05D005626 ORTHO05D007372 4.0e-41 173.7 143 60.8
MBI19_g14786_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 4.9e-39 166.8 129 67.4
Mapoly0045s0029 Marchantia polymorpha HOM05D005626 ORTHO05D007372 8.7e-36 156.0 332 50.0
Mapoly0001s0084 Marchantia polymorpha HOM05D005626 ORTHO05D007372 1.1e-30 139.0 414 32.1
Glyma.06G130267 Glycine max HOM05D005626 ORTHO05D007372 7.1e-30 136.3 105 65.7
MBI19_g14787_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 3.7e-26 124.0 82 69.5
Glyma.06G130333 Glycine max HOM05D005626 ORTHO05D007372 1.4e-25 122.1 117 52.1
Pp3c5_16230 Physcomitrium patens HOM05D005626 ORTHO05D007372 1.4e-25 122.1 344 31.4
BcaB01g04215 Brassica carinata HOM05D005626 ORTHO05D007372 1.8e-25 121.7 155 44.5
QL09p008133 Quercus lobata HOM05D005626 ORTHO05D007372 1.0e-20 105.9 78 67.9
Pp3c5_16240 Physcomitrium patens HOM05D005626 ORTHO05D007372 8.7e-20 102.8 321 49.8
Manes.06G011750 Manihot esculenta HOM05D005626 ORTHO05D007372 1.4e-17 95.5 70 61.4
CSS0006573 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 2.0e-16 91.7 85 58.8
AagrBONN_evm.TU.Sc2ySwM_369.443 Anthoceros agrestis HOM05D005626 ORTHO05D007372 5.9e-16 90.1 178 32.0
FAN10G4199 Fragaria x ananassa HOM05D005626 ORTHO05D007372 7.7e-16 89.7 120 69.2
Pp3c16_9300 Physcomitrium patens HOM05D005626 ORTHO05D007372 1.6e-13 82.0 386 22.8
Cfa019813 Carpinus fangiana HOM05D005626 ORTHO05D007372 1.4e-12 79.0 62 61.3
Pp3c23_14930 Physcomitrium patens HOM05D005626 ORTHO05D007372 3.0e-12 77.8 155 32.9
Pp3c8_12740 Physcomitrium patens HOM05D005626 ORTHO05D007372 3.9e-12 77.4 140 32.9
BcaB01g04214 Brassica carinata HOM05D005626 ORTHO05D007372 5.7e-11 73.6 156 35.3
QL09p008114 Quercus lobata HOM05D005626 ORTHO05D007372 2.2e-10 71.6 50 70.0
Actinidia06140 Actinidia chinensis HOM05D005626 ORTHO05D007372 3.1e-09 67.8 60 55.0
Lj1A1021T50 Lonicera japonica HOM05D005626 ORTHO05D007372 3.1e-09 67.8 161 31.7
MD07G1293500 Malus domestica HOM05D005626 ORTHO05D007372 3.1e-09 67.8 56 55.4
MD07G1293400 Malus domestica HOM05D005626 ORTHO05D007372 5.9e-08 63.5 122 38.5


User provided reference genes

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