Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G3234 Papaver somniferum HOM05D007742 ORTHO05D004072 2.7e-241 838.2 388 100.0
PSO357G0543 Papaver somniferum HOM05D007742 ORTHO05D004072 3.6e-217 758.1 389 91.8
TAR374G0633 Trochodendron aralioides HOM05D007742 ORTHO05D004072 2.6e-42 177.2 427 31.6
Nn4g22099 Nelumbo nucifera HOM05D007742 ORTHO05D004072 9.5e-37 158.7 232 37.9
EL10As2g23272 Beta vulgaris HOM05D007742 ORTHO05D004072 2.2e-33 147.5 151 44.4
CiPaw.15G155500 Carya illinoinensis HOM05D007742 ORTHO05D004072 8.3e-33 145.6 147 45.6
Aqoxy5G03036 Aquilegia oxysepala HOM05D007742 ORTHO05D004072 3.5e-31 140.2 218 34.9
Ah.03g136430 Amaranthus hybridus HOM05D007742 ORTHO05D004072 4.3e-29 133.3 146 42.5
QL02p069032 Quercus lobata HOM05D007742 ORTHO05D004072 7.3e-29 132.5 153 40.5
Sc16g0003130 Simmondsia chinensis HOM05D007742 ORTHO05D004072 6.2e-28 129.4 143 41.3
Manes.04G094400 Manihot esculenta HOM05D007742 ORTHO05D004072 1.8e-27 127.9 156 42.3
BraA09t37545Z Brassica rapa HOM05D009880 ORTHO05D004072 8.9e-27 125.6 141 45.4
Thhalv10013728m.g Eutrema salsugineum HOM05D009880 ORTHO05D004072 1.5e-26 124.8 141 42.6
BcaB07g31107 Brassica carinata HOM05D009880 ORTHO05D004072 2.6e-26 124.0 265 34.0
C09p24280 Brassica napus HOM05D009880 ORTHO05D004072 4.4e-26 123.2 141 45.4
BolC9t55345H Brassica oleracea HOM05D009880 ORTHO05D004072 4.4e-26 123.2 141 45.4
Atru.chr6.2712 Acer truncatum HOM05D007742 ORTHO05D004072 7.6e-26 122.5 161 37.3
Cfa007153 Carpinus fangiana HOM05D007742 ORTHO05D004072 9.9e-26 122.1 198 33.3
BraA03t09959Z Brassica rapa HOM05D009880 ORTHO05D004072 1.3e-25 121.7 150 39.3
A09p19280 Brassica napus HOM05D009880 ORTHO05D004072 1.7e-25 121.3 180 38.9
A03p06280 Brassica napus HOM05D009880 ORTHO05D004072 2.9e-25 120.6 150 39.3
Dinv33270 Davidia involucrata HOM05D007742 ORTHO05D004072 2.9e-25 120.6 136 44.1
Carub.0006s1211 Capsella rubella HOM05D009880 ORTHO05D004072 6.4e-25 119.4 137 42.3
BcaB01g05328 Brassica carinata HOM05D009880 ORTHO05D004072 1.1e-24 118.6 150 38.7
C03p07260 Brassica napus HOM05D009880 ORTHO05D004072 1.1e-24 118.6 150 38.7
CARHR284540 Cardamine hirsuta HOM05D009880 ORTHO05D004072 1.4e-24 118.2 141 41.8
Aa31LG2G11760 Aethionema arabicum HOM05D009880 ORTHO05D004072 2.4e-24 117.5 145 42.8
Lj1g0016784 Lotus japonicus HOM05D007742 ORTHO05D001134 4.2e-24 116.7 172 33.1
Lj2g0008812 Lotus japonicus HOM05D007742 ORTHO05D004072 4.2e-24 116.7 172 33.1
BcaC04g22033 Brassica carinata HOM05D009880 ORTHO05D004072 7.1e-24 115.9 141 44.0
AT5G13920 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 1.2e-23 115.2 145 40.0
Sp6g30080 Schrenkiella parvula HOM05D009880 ORTHO05D004072 3.5e-23 113.6 146 37.7
Ciclev10014788m.g Citrus clementina HOM05D007742 ORTHO05D004072 6.0e-23 112.8 149 37.6
Potri.009G112676 Populus trichocarpa HOM05D007742 ORTHO05D004072 7.8e-23 112.5 151 41.1
Potri.T125604 Populus trichocarpa HOM05D007742 ORTHO05D004072 7.8e-23 112.5 151 41.1
HPP92_017732 Vanilla planifolia HOM05D008124 ORTHO05D004072 7.8e-23 112.5 155 38.1
QL02p068827 Quercus lobata HOM05D007742 ORTHO05D004072 1.0e-22 112.1 155 37.4
Lj1g0006134 Lotus japonicus HOM05D007742 ORTHO05D004072 1.7e-22 111.3 164 34.1
Potri.T125504 Populus trichocarpa HOM05D007742 ORTHO05D004072 1.7e-22 111.3 184 36.4
Ciclev10014656m.g Citrus clementina HOM05D007742 ORTHO05D004072 2.3e-22 110.9 155 36.1
MD17G1125500 Malus domestica HOM05D008124 ORTHO05D004072 5.1e-22 109.8 201 34.8
Mapoly0141s0028 Marchantia polymorpha HOM05D008124 ORTHO05D004072 6.6e-22 109.4 244 31.1
Os03g0786500 Oryza sativa ssp. japonica HOM05D008124 ORTHO05D004072 6.6e-22 109.4 166 31.9
CAN.G134.65 Capsicum annuum HOM05D008124 ORTHO05D004072 8.7e-22 109.0 184 35.3
VMungo0464G0864 Vigna mungo HOM05D007742 ORTHO05D004072 1.5e-21 108.2 146 36.3
CANSAT64G0620 Cannabis sativa HOM05D008124 ORTHO05D004072 2.5e-21 107.5 159 35.2
TAR627G0754 Trochodendron aralioides HOM05D008124 ORTHO05D004072 2.5e-21 107.5 167 35.3
Cfa000684 Carpinus fangiana HOM05D008124 ORTHO05D004072 3.3e-21 107.1 158 35.4
Sabra09G0086100 Salix brachista HOM05D007742 ORTHO05D004072 4.3e-21 106.7 182 35.7
PGSC0003DMG400027518 Solanum tuberosum HOM05D008124 ORTHO05D004072 1.2e-20 105.1 184 34.8
Zm00001eb059980 Zea mays HOM05D008124 ORTHO05D004072 2.8e-20 104.0 163 35.6
RcHm_v2.0_Chr2g0154211 Rosa chinensis HOM05D008124 ORTHO05D004072 1.1e-19 102.1 215 29.8
Sabra09G0086000 Salix brachista HOM05D007742 ORTHO05D004072 1.1e-19 102.1 178 36.5
Carub.0002s0844 Capsella rubella HOM05D009880 ORTHO05D004072 1.4e-19 101.7 136 41.2
VMungo1383G1777 Vigna mungo HOM05D007742 ORTHO05D004072 1.4e-19 101.7 151 34.4
Ca_08225_v3 Cicer arietinum L. HOM05D007742 ORTHO05D004072 1.8e-19 101.3 133 39.1
Glyma.19G105500 Glycine max HOM05D007742 ORTHO05D004072 5.3e-19 99.8 144 36.8
EL10As2g23251 Beta vulgaris HOM05D007742 ORTHO05D004072 6.9e-19 99.4 102 41.2
Rhsim07G0073400 Rhododendron simsii HOM05D008124 ORTHO05D004072 6.9e-19 99.4 182 34.6
FAN14G4038 Fragaria x ananassa HOM05D000027 ORTHO05D004072 9.0e-19 99.0 221 29.0
PSO541G0277 Papaver somniferum HOM05D008124 ORTHO05D004072 1.2e-18 98.6 187 29.9
Lalb_Chr22g0359781 Lupinus albus HOM05D007742 ORTHO05D004072 1.5e-18 98.2 171 34.5
C09p47180 Brassica napus HOM05D008124 ORTHO05D004072 2.0e-18 97.8 147 36.1
BolC9t57572H Brassica oleracea HOM05D008124 ORTHO05D004072 2.0e-18 97.8 147 36.1
PGR142G3827 Punica granatum HOM05D007742 ORTHO05D004072 2.6e-18 97.4 154 35.1
Thhalv10013799m.g Eutrema salsugineum HOM05D008124 ORTHO05D004072 3.4e-18 97.1 130 37.7
Nn4g26556 Nelumbo nucifera HOM05D008124 ORTHO05D004072 3.4e-18 97.1 188 31.9
Sp6g17920 Schrenkiella parvula HOM05D008124 ORTHO05D004072 3.4e-18 97.1 113 41.6
Eucgr.K01332 Eucalyptus grandis HOM05D008124 ORTHO05D004072 4.4e-18 96.7 205 30.7
Prupe.3G190200 Prunus persica HOM05D008124 ORTHO05D004072 4.4e-18 96.7 193 31.1
Sopen01g040750 Solanum pennellii HOM05D008124 ORTHO05D004072 4.4e-18 96.7 210 30.0
QL02p069084 Quercus lobata HOM05D007742 ORTHO05D004072 5.8e-18 96.3 139 36.7
AT3G42860 Arabidopsis thaliana HOM05D008124 ORTHO05D004072 7.6e-18 95.9 117 38.5
AL5G21140 Arabidopsis lyrata HOM05D008124 ORTHO05D004072 9.9e-18 95.5 114 41.2
Carub.0005s0890 Capsella rubella HOM05D008124 ORTHO05D004072 9.9e-18 95.5 109 43.1
GSVIVG01018616001 Vitis vinifera HOM05D008124 ORTHO05D004072 9.9e-18 95.5 168 35.1
Haze_06124 Corylus avellana HOM05D008124 ORTHO05D004072 1.3e-17 95.1 141 35.5
CSS0026315 Camellia sinensis var. sinensis HOM05D007742 ORTHO05D004072 1.7e-17 94.7 149 39.6
Psat3g092040 Pisum sativum HOM05D007742 ORTHO05D004072 3.8e-17 93.6 135 34.8
Sed0023600 Sechium edule HOM05D008124 ORTHO05D004072 3.8e-17 93.6 168 31.5
PGR004G0249 Punica granatum HOM05D008124 ORTHO05D004072 4.9e-17 93.2 142 35.2
Cc07_g01390 Coffea canephora HOM05D007742 ORTHO05D004072 6.4e-17 92.8 101 40.6
Cc07_g01400 Coffea canephora HOM05D007742 ORTHO05D004072 6.4e-17 92.8 101 40.6
Prupe.3G314400 Prunus persica HOM05D007742 ORTHO05D004072 8.4e-17 92.4 157 33.1
AT1G54930 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 1.1e-16 92.0 189 30.7
DCAR_008617 Daucus carota HOM05D007742 ORTHO05D004072 1.1e-16 92.0 145 35.2
FvH4_6g39844 Fragaria vesca HOM05D008124 ORTHO05D004072 1.4e-16 91.7 235 27.7
arahy.Tifrunner.gnm1.ann1.T3P4RE Arachis hypogaea HOM05D007742 ORTHO05D004072 1.9e-16 91.3 139 33.8
A10p13280 Brassica napus HOM05D008124 ORTHO05D004072 1.9e-16 91.3 114 38.6
BraA10t43425Z Brassica rapa HOM05D008124 ORTHO05D004072 1.9e-16 91.3 114 38.6
Nitab4.5_0002247g0100 Nicotiana tabacum HOM05D008124 ORTHO05D004072 1.9e-16 91.3 172 33.7
Nitab4.5_0005905g0010 Nicotiana tabacum HOM05D008124 ORTHO05D004072 3.2e-16 90.5 172 33.1
arahy.Tifrunner.gnm1.ann1.U642C8 Arachis hypogaea HOM05D007742 ORTHO05D004072 7.1e-16 89.4 139 32.4
CARHR152360 Cardamine hirsuta HOM05D008124 ORTHO05D004072 9.3e-16 89.0 146 35.6
AL1G65420 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 1.2e-15 88.6 138 34.1
THA.LOC104823128 Tarenaya hassleriana HOM05D009880 ORTHO05D004072 2.1e-15 87.8 119 41.2
Aa31LG4G13260 Aethionema arabicum HOM05D008124 ORTHO05D004072 2.7e-15 87.4 196 30.6
MBI02_g36352_MAGBIO Magnolia biondii HOM05D008124 ORTHO05D004072 3.5e-15 87.0 112 38.4
MSTRG.25687 Avicennia marina HOM05D007742 ORTHO05D004072 4.6e-15 86.7 126 41.3
Solyc01g097070.4 Solanum lycopersicum HOM05D008124 ORTHO05D004072 6.0e-15 86.3 156 33.3
Aa31LG2G11730 Aethionema arabicum HOM05D009880 ORTHO05D004072 1.0e-14 85.5 89 46.1
AagrBONN_evm.TU.Sc2ySwM_228.5614 Anthoceros agrestis HOM05D008124 ORTHO05D004072 1.0e-14 85.5 186 30.6
Gohir.A07G082400 Gossypium hirsutum HOM05D018961 ORTHO05D004072 1.3e-14 85.1 172 33.7
Dinv20269 Davidia involucrata HOM05D008124 ORTHO05D004072 1.7e-14 84.7 119 36.1
Duzib138G1433 Durio zibethinus HOM05D018961 ORTHO05D004072 1.7e-14 84.7 156 33.3
Manes.09G074700 Manihot esculenta HOM05D008124 ORTHO05D004072 1.7e-14 84.7 104 38.5
THA.LOC104810998 Tarenaya hassleriana HOM05D008124 ORTHO05D004072 3.9e-14 83.6 117 35.9
CDE06G0867 Ceratophyllum demersum HOM05D007742 ORTHO05D004072 5.1e-14 83.2 93 40.9
Gohir.D07G088900 Gossypium hirsutum HOM05D018961 ORTHO05D004072 5.1e-14 83.2 149 35.6
TWI60G0051 Tripterygium wilfordii HOM05D008124 ORTHO05D004072 8.7e-14 82.4 119 34.5
CDE02G3354 Ceratophyllum demersum HOM05D008124 ORTHO05D004072 1.5e-13 81.6 136 32.4
SGA_v2.0_scaffold305G47989 Striga asiatica HOM05D007742 ORTHO05D004072 1.5e-13 81.6 98 40.8
HPP92_017701 Vanilla planifolia HOM05D008124 ORTHO05D004072 2.5e-13 80.9 94 41.5
Haze_14967 Corylus avellana HOM05D007742 ORTHO05D004072 3.6e-12 77.0 198 25.8
Migut.A00628 Erythranthe guttata HOM05D007742 ORTHO05D004072 4.8e-12 76.6 100 41.0
CSS0000950 Camellia sinensis var. sinensis HOM05D007742 ORTHO05D004072 1.1e-11 75.5 137 35.8
Hund19588 Selenicereus undatus HOM05D007742 ORTHO05D004072 9.0e-11 72.4 72 43.1
Thecc.01G137400 Theobroma cacao HOM05D002182 ORTHO05D004671 5.8e-10 69.7 97 35.1
Gorai.007G066700 Gossypium raimondii HOM05D002182 ORTHO05D004671 7.6e-10 69.3 119 29.4
AUR62017629 Chenopodium quinoa HOM05D008124 ORTHO05D004072 1.3e-09 68.6 171 28.1
Gohir.A11G057700 Gossypium hirsutum HOM05D002182 ORTHO05D004671 1.7e-09 68.2 86 34.9
MBI07_g43314_MAGBIO Magnolia biondii HOM05D002182 ORTHO05D004671 1.7e-09 68.2 98 38.8
Ca_16979_v3 Cicer arietinum L. HOM05D002182 ORTHO05D004671 2.2e-09 67.8 85 36.5
Gohir.D11G061900 Gossypium hirsutum HOM05D002182 ORTHO05D004671 2.9e-09 67.4 117 29.9
BcaB07g29709 Brassica carinata HOM05D002182 ORTHO05D004671 6.4e-09 66.2 92 35.9
TPR.G33581 Trifolium pratense HOM05D002182 ORTHO05D004671 6.4e-09 66.2 85 37.6
COL.COLO4_35815 Corchorus olitorius HOM05D002182 ORTHO05D004671 8.4e-09 65.9 86 37.2
Rhsim08G0038200 Rhododendron simsii HOM05D000001 ORTHO05D000003 8.4e-09 65.9 196 29.1
RcHm_v2.0_Chr2g0122231 Rosa chinensis HOM05D002182 ORTHO05D004671 8.4e-09 65.9 97 36.1
AUR62015176 Chenopodium quinoa HOM05D008124 ORTHO05D004072 1.1e-08 65.5 177 27.7
Aa31LG1G17970 Aethionema arabicum HOM05D002182 ORTHO05D004671 1.4e-08 65.1 88 37.5
FvH4_1g24710 Fragaria vesca HOM05D002182 ORTHO05D004671 2.4e-08 64.3 97 35.1
C02p63020 Brassica napus HOM05D002182 ORTHO05D017531 3.2e-08 63.9 89 38.2
Oeu050090.2 Olea europaea HOM05D002182 ORTHO05D004671 3.2e-08 63.9 109 32.1
Lj4C830T7 Lonicera japonica HOM05D002182 ORTHO05D004671 4.2e-08 63.5 100 34.0
Lalb_Chr11g0068591 Lupinus albus HOM05D002182 ORTHO05D004671 4.2e-08 63.5 84 32.1
GSVIVG01026461001 Vitis vinifera HOM05D002182 ORTHO05D004671 4.2e-08 63.5 84 38.1
EL10Ac9g22884 Beta vulgaris HOM05D008124 ORTHO05D004072 5.4e-08 63.2 86 33.7
Lj1g0008046 Lotus japonicus HOM05D002182 ORTHO05D004671 5.4e-08 63.2 84 36.9
Sopen05g009910 Solanum pennellii HOM05D002182 ORTHO05D004671 5.4e-08 63.2 86 34.9
Duzib264G0915 Durio zibethinus HOM05D002182 ORTHO05D004671 9.3e-08 62.4 84 34.5
Solyc05g014720.4 Solanum lycopersicum HOM05D002182 ORTHO05D004671 9.3e-08 62.4 100 31.0
THA.LOC104818422 Tarenaya hassleriana HOM05D002182 ORTHO05D004671 9.3e-08 62.4 84 35.7
CAN.G163.2 Capsicum annuum HOM05D002182 ORTHO05D004671 1.2e-07 62.0 100 33.0
Manes.13G078050 Manihot esculenta HOM05D002182 ORTHO05D004671 1.2e-07 62.0 87 34.5
Nn5g28440 Nelumbo nucifera HOM05D002182 ORTHO05D004671 1.2e-07 62.0 99 38.4
Atru.chr4.980 Acer truncatum HOM05D002182 ORTHO05D004671 2.1e-07 61.2 85 35.3
A02p43050 Brassica napus HOM05D002182 ORTHO05D004671 2.1e-07 61.2 89 37.1
BraA02t09226Z Brassica rapa HOM05D002182 ORTHO05D004671 2.1e-07 61.2 89 37.1
MD15G1134700 Malus domestica HOM05D002182 ORTHO05D004671 2.1e-07 61.2 84 36.9
Sc16g0009510 Simmondsia chinensis HOM05D002182 ORTHO05D004671 2.1e-07 61.2 85 37.6
MBI11_g02483_MAGBIO Magnolia biondii HOM05D056835 ORTHO05D004072 2.7e-07 60.8 123 30.9
FAN02G4088 Fragaria x ananassa HOM05D008124 ORTHO05D004072 3.5e-07 60.5 56 41.1
CANSAT64G0751 Cannabis sativa HOM05D007742 ORTHO05D004072 4.6e-07 60.1 38 63.2
Cfa002178 Carpinus fangiana HOM05D002182 ORTHO05D004671 4.6e-07 60.1 109 32.1
Dinv35485 Davidia involucrata HOM05D002182 ORTHO05D004671 4.6e-07 60.1 85 36.5
TWI79G1433 Tripterygium wilfordii HOM05D002182 ORTHO05D004671 4.6e-07 60.1 88 35.2
CANSAT01G2275 Cannabis sativa HOM05D002182 ORTHO05D004671 6.0e-07 59.7 84 36.9
Sed0004202 Sechium edule HOM05D008124 ORTHO05D004072 6.0e-07 59.7 58 43.1
Aqoxy5G02289 Aquilegia oxysepala HOM05D002182 ORTHO05D004671 7.9e-07 59.3 114 30.7
AL8G41160 Arabidopsis lyrata HOM05D002182 ORTHO05D004671 7.9e-07 59.3 87 34.5
Nitab4.5_0001277g0010 Nicotiana tabacum HOM05D002182 ORTHO05D004671 1.0e-06 58.9 85 35.3
Dinv42202 Davidia involucrata HOM05D002655 ORTHO05D002558 1.3e-06 58.5 91 36.3
AT5G63920 Arabidopsis thaliana HOM05D002182 ORTHO05D004671 1.8e-06 58.2 89 36.0
Carub.0008s2470 Capsella rubella HOM05D002182 ORTHO05D004671 1.8e-06 58.2 88 34.1
CsaV3_3G039390 Cucumis sativus L. HOM05D002182 ORTHO05D004671 1.8e-06 58.2 85 32.9
CSS0006654 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 2.3e-06 57.8 72 38.9
CSS0017436 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 2.3e-06 57.8 72 38.9
ClCG07G010840 Citrullus lanatus HOM05D008124 ORTHO05D004072 2.3e-06 57.8 97 33.0
vmacro12745 Vaccinium macrocarpon HOM05D002182 ORTHO05D004671 3.9e-06 57.0 110 34.5
EL10Ac4g09621 Beta vulgaris HOM05D002182 ORTHO05D004671 5.1e-06 56.6 85 36.5
CiPaw.04G079900 Carya illinoinensis HOM05D002182 ORTHO05D004671 5.1e-06 56.6 85 35.3
Sed0010212 Sechium edule HOM05D002182 ORTHO05D004671 5.1e-06 56.6 85 35.3
Potri.005G067100 Populus trichocarpa HOM05D002182 ORTHO05D004671 6.7e-06 56.2 85 34.1
Actinidia20028 Actinidia chinensis HOM05D002182 ORTHO05D004671 8.7e-06 55.8 84 34.5
Phvul.009G154850 Phaseolus vulgaris HOM05D002182 ORTHO05D004671 8.7e-06 55.8 84 32.1
Hund21801 Selenicereus undatus HOM05D002182 ORTHO05D004671 8.7e-06 55.8 104 34.6


User provided reference genes

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