Gene: AT3G42860

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G42860
  • Transcript Identifier AT3G42860.1
  • Gene Type Coding gene
  • Location Chr3 : 14946458-14948097 : negative

Gene Family Information

Gene Duplication Information

Labels

Identifiers

  • tid AT3G42860.1
  • uniprot Q9M1L9

Descriptions

  • Description zinc knuckle (CCHC-type) family protein
  • Computational description zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878), Zinc finger, GRF-type (InterPro:IPR010666), Zinc finger, CCHC retroviral-type (InterPro:IPR013084); BEST Arabidopsis thaliana protein match is: cold shock domain protein 1 (TAIR:AT4G36020.1); Has 49068 Blast hits to 18471 proteins in 427 species: Archae - 0; Bacteria - 1; Metazoa - 1577; Fungi - 900; Plants - 1276; Viruses - 44658; Other Eukaryotes - 656 (source: NCBI BLink).
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Functional Annotation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
Gene Ontologynucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0008270
IEA
Gene Ontologyzinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0046872
IEA
GOA Databasemetal ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM
Gene Ontologynucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR010666 Zinc finger, GRF-type
IPR036875 Zinc finger, CCHC-type superfamily
IPR001878 Zinc finger, CCHC-type
Mapman id Description
35.1 not assigned.annotated