Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G4641 Papaver somniferum HOM05D001988 ORTHO05D004985 0.0e+00 1300.8 642 100.0
PSO017G3571 Papaver somniferum HOM05D001988 ORTHO05D004985 0.0e+00 1100.9 613 89.6
Nn4g23157 Nelumbo nucifera HOM05D001988 ORTHO05D004985 2.1e-131 473.8 701 41.1
THA.LOC104805159 Tarenaya hassleriana HOM05D001988 ORTHO05D004985 7.1e-127 458.8 670 40.9
Aqoxy1G01101 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.2e-126 458.0 734 39.1
vmacro01260 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 1.0e-125 454.9 723 39.4
GSVIVG01019982001 Vitis vinifera HOM05D001988 ORTHO05D004985 3.0e-125 453.4 652 41.9
HanXRQChr09g0255131 Helianthus annuus HOM05D001988 ORTHO05D004985 8.1e-123 445.3 626 42.3
QL03p063402 Quercus lobata HOM05D001988 ORTHO05D004985 4.0e-122 443.0 683 39.7
QL03p064038 Quercus lobata HOM05D001988 ORTHO05D004985 4.0e-122 443.0 683 39.7
Cfa008981 Carpinus fangiana HOM05D001988 ORTHO05D004985 5.2e-122 442.6 701 38.7
Cpa.g.sc128.24 Carica papaya HOM05D001988 ORTHO05D004985 1.2e-121 441.4 685 38.5
Manes.01G185700 Manihot esculenta HOM05D001988 ORTHO05D004985 9.9e-121 438.3 701 37.8
Rhsim12G0063800 Rhododendron simsii HOM05D001988 ORTHO05D004985 9.9e-121 438.3 724 38.8
Actinidia19875 Actinidia chinensis HOM05D001988 ORTHO05D004985 6.4e-120 435.6 730 38.9
PGR102G2417 Punica granatum HOM05D001988 ORTHO05D004985 6.4e-120 435.6 703 39.5
Eucgr.B03445 Eucalyptus grandis HOM05D001988 ORTHO05D004985 8.4e-120 435.3 687 38.7
HanXRQChr05g0145521 Helianthus annuus HOM05D001988 ORTHO05D004985 1.4e-119 434.5 637 41.3
MD04G1025400 Malus domestica HOM05D001988 ORTHO05D004985 3.2e-119 433.3 670 39.4
TWI53G0339 Tripterygium wilfordii HOM05D001988 ORTHO05D004985 3.2e-119 433.3 675 39.3
Lj8A318G47 Lonicera japonica HOM05D001988 ORTHO05D004985 1.2e-118 431.4 656 39.6
Lsat_1_v5_gn_5_156781 Lactuca sativa HOM05D001988 ORTHO05D004985 3.5e-118 429.9 674 38.9
Lsat_1_v5_gn_8_100701 Lactuca sativa HOM05D001988 ORTHO05D004985 4.6e-118 429.5 637 39.9
CANSAT54G1389 Cannabis sativa HOM05D001988 ORTHO05D004985 2.3e-117 427.2 709 37.0
ECA248G0899 Erigeron canadensis HOM05D001988 ORTHO05D004985 1.1e-116 424.9 648 39.5
Ciclev10030768m.g Citrus clementina HOM05D001988 ORTHO05D004985 3.3e-116 423.3 775 36.9
PGSC0003DMG401018705 Solanum tuberosum HOM05D001988 ORTHO05D004985 3.6e-115 419.9 634 41.6
Sabra10G0129300 Salix brachista HOM05D001988 ORTHO05D004985 6.2e-115 419.1 722 37.0
Sed0003814 Sechium edule HOM05D001988 ORTHO05D004985 3.1e-114 416.8 690 37.4
Solyc11g071540.2 Solanum lycopersicum HOM05D001988 ORTHO05D004985 6.9e-114 415.6 630 41.1
Prupe.1G174900 Prunus persica HOM05D001988 ORTHO05D004985 9.0e-114 415.2 681 37.4
Sopen11g029230 Solanum pennellii HOM05D001988 ORTHO05D004985 9.0e-114 415.2 630 41.6
ClCG11G010950 Citrullus lanatus HOM05D001988 ORTHO05D004985 3.4e-113 413.3 724 36.9
Psat7g139200 Pisum sativum HOM05D001988 ORTHO05D004985 3.4e-113 413.3 656 39.3
Phvul.011G039300 Phaseolus vulgaris HOM05D001988 ORTHO05D004985 7.6e-113 412.1 690 37.7
CAN.G439.30 Capsicum annuum HOM05D001988 ORTHO05D004985 1.3e-112 411.4 616 41.6
Aa31LG2G7390 Aethionema arabicum HOM05D001988 ORTHO05D004985 2.9e-112 410.2 680 37.9
ECA234G0637 Erigeron canadensis HOM05D001988 ORTHO05D004985 2.9e-112 410.2 629 38.6
Gorai.009G324500 Gossypium raimondii HOM05D001988 ORTHO05D004985 6.4e-112 409.1 677 37.4
Thecc.02G346500 Theobroma cacao HOM05D001988 ORTHO05D004985 6.4e-112 409.1 705 37.6
Glyma.11G111300 Glycine max HOM05D001988 ORTHO05D004985 8.4e-112 408.7 683 36.5
MELO3C008752.2 Cucumis melo HOM05D001988 ORTHO05D004985 1.4e-111 407.9 749 36.4
Ca_20931_v3 Cicer arietinum L. HOM05D001988 ORTHO05D004985 1.9e-111 407.5 690 38.3
AUR62005788 Chenopodium quinoa HOM05D001988 ORTHO05D004985 3.2e-111 406.8 687 37.3
Gohir.D05G304800 Gossypium hirsutum HOM05D001988 ORTHO05D004985 7.1e-111 405.6 677 37.1
Lalb_Chr14g0368981 Lupinus albus HOM05D001988 ORTHO05D004985 6.0e-110 402.5 684 37.4
vmacro01166 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 7.8e-110 402.1 740 36.5
Duzib251G0871 Durio zibethinus HOM05D001988 ORTHO05D004985 1.0e-109 401.7 688 36.6
SHI13475 Sapria himalayana HOM05D001988 ORTHO05D004985 1.3e-109 401.4 658 37.1
Lj3g0010541 Lotus japonicus HOM05D001988 ORTHO05D004985 3.0e-109 400.2 668 38.2
Nitab4.5_0007649g0010 Nicotiana tabacum HOM05D001988 ORTHO05D004985 6.6e-109 399.1 682 38.7
Migut.F02100 Erythranthe guttata HOM05D001988 ORTHO05D004985 8.7e-109 398.7 653 39.1
VMungo1127G0715 Vigna mungo HOM05D001988 ORTHO05D004985 1.1e-108 398.3 692 36.3
Hund05880 Selenicereus undatus HOM05D001988 ORTHO05D004985 1.5e-108 397.9 705 35.0
SalBow1G3615 Salvia bowleyana HOM05D001988 ORTHO05D004985 2.5e-108 397.1 634 39.6
Medtr4g057650 Medicago truncatula HOM05D001988 ORTHO05D004985 4.3e-108 396.4 634 39.4
FAN21G2649 Fragaria x ananassa HOM05D001988 ORTHO05D004985 7.3e-108 395.6 686 36.2
EL10Ac6g13205 Beta vulgaris HOM05D001988 ORTHO05D004985 1.3e-107 394.8 664 36.9
Sp7g05500 Schrenkiella parvula HOM05D001988 ORTHO05D004985 1.3e-107 394.8 685 37.2
CSS0030030 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D004985 2.8e-107 393.7 692 37.3
Peaxi162Scf00217g00713 Petunia axillaris HOM05D001988 ORTHO05D004985 4.8e-107 392.9 669 36.6
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 6.2e-107 392.5 686 36.0
Nitab4.5_0000428g0180 Nicotiana tabacum HOM05D001988 ORTHO05D004985 8.1e-107 392.1 675 38.7
FvH4_3g26291 Fragaria vesca HOM05D001988 ORTHO05D004985 1.1e-106 391.7 686 35.7
Cc09_g03970 Coffea canephora HOM05D001988 ORTHO05D004985 4.0e-106 389.8 668 37.3
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 4.0e-106 389.8 686 35.6
TPR.G27077 Trifolium pratense HOM05D001988 ORTHO05D004985 4.0e-106 389.8 644 38.8
AT2G02955 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 1.5e-105 387.9 652 38.2
BolC8t52776H Brassica oleracea HOM05D001988 ORTHO05D004985 2.0e-105 387.5 668 37.6
AL5G12570 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 2.6e-105 387.1 682 37.5
Lsat_1_v5_gn_4_55321 Lactuca sativa HOM05D001988 ORTHO05D004985 1.3e-104 384.8 652 37.3
C08p52490 Brassica napus HOM05D001988 ORTHO05D004985 2.9e-104 383.6 668 37.3
BraA09t42140Z Brassica rapa HOM05D001988 ORTHO05D004985 3.8e-104 383.3 666 37.1
SGA_v2.0_scaffold58G20462 Striga asiatica HOM05D001988 ORTHO05D004985 3.8e-104 383.3 656 37.5
Gohir.A05G183600 Gossypium hirsutum HOM05D001988 ORTHO05D004985 4.9e-104 382.9 679 35.9
Carub.0005s0183 Capsella rubella HOM05D001988 ORTHO05D004985 8.4e-104 382.1 679 36.1
Haze_12013 Corylus avellana HOM05D001988 ORTHO05D004985 2.4e-103 380.6 822 32.4
EL10Ac9g22126 Beta vulgaris HOM05D001988 ORTHO05D004985 5.4e-103 379.4 708 34.2
CiPaw.05G135300 Carya illinoinensis HOM05D001988 ORTHO05D004985 5.4e-103 379.4 567 39.7
CsaV3_2G009530 Cucumis sativus L. HOM05D001988 ORTHO05D004985 5.4e-103 379.4 592 38.2
A09p68050 Brassica napus HOM05D001988 ORTHO05D004985 9.3e-103 378.6 667 36.6
arahy.Tifrunner.gnm1.ann1.AY0VQT Arachis hypogaea HOM05D001988 ORTHO05D004985 2.7e-102 377.1 707 35.6
TPR.G16225 Trifolium pratense HOM05D001988 ORTHO05D004985 2.7e-102 377.1 604 40.1
arahy.Tifrunner.gnm1.ann1.41IR6N Arachis hypogaea HOM05D001988 ORTHO05D004985 4.6e-102 376.3 698 36.1
BcaC07g42212 Brassica carinata HOM05D001988 ORTHO05D004985 6.0e-102 375.9 630 37.3
Sopen09g001990 Solanum pennellii HOM05D001988 ORTHO05D004985 1.8e-101 374.4 622 38.4
arahy.Tifrunner.gnm1.ann1.8UN484 Arachis hypogaea HOM05D001988 ORTHO05D004985 2.3e-101 374.0 702 35.6
Thhalv10027666m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 6.7e-101 372.5 642 38.8
Medtr4g071660 Medicago truncatula HOM05D001988 ORTHO05D004985 1.1e-100 371.7 634 38.2
FAN25G3456 Fragaria x ananassa HOM05D001988 ORTHO05D004985 1.5e-100 371.3 659 36.0
Solyc09g007120.4 Solanum lycopersicum HOM05D001988 ORTHO05D004985 1.9e-100 370.9 519 41.6
MSTRG.27418 Avicennia marina HOM05D001988 ORTHO05D004985 1.3e-99 368.2 689 34.4
Dinv16646 Davidia involucrata HOM05D001988 ORTHO05D004985 1.3e-99 368.2 407 48.9
Migut.I00421 Erythranthe guttata HOM05D001988 ORTHO05D004985 1.3e-99 368.2 608 37.2
Sc11g0001930 Simmondsia chinensis HOM05D001988 ORTHO05D004985 2.1e-99 367.5 644 37.0
AUR62028773 Chenopodium quinoa HOM05D001988 ORTHO05D004985 4.8e-99 366.3 643 36.4
Ah.05g179340 Amaranthus hybridus HOM05D001988 ORTHO05D004985 1.1e-98 365.2 688 34.3
AL6G52060 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 9.0e-98 362.1 615 37.4
TAR629G1399 Trochodendron aralioides HOM05D001988 ORTHO05D004985 2.0e-97 360.9 508 41.7
CDE07G0941 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 4.5e-97 359.8 577 37.8
unitig_60.g25620 Utricularia gibba HOM05D001988 ORTHO05D004985 5.5e-95 352.8 633 34.9
HPP92_021577 Vanilla planifolia HOM05D001988 ORTHO05D004985 1.8e-93 347.8 687 34.6
Zm00001eb284870 Zea mays HOM05D001988 ORTHO05D004985 1.3e-91 341.7 562 36.7
Hma1.2p1_0265F.1_g106750 Hydrangea macrophylla HOM05D001988 ORTHO05D004985 2.8e-91 340.5 380 46.6
RcHm_v2.0_Chr5g0048641 Rosa chinensis HOM05D001988 ORTHO05D004985 9.0e-90 335.5 517 38.1
RcHm_v2.0_Chr7g0220021 Rosa chinensis HOM05D001988 ORTHO05D004985 2.6e-89 334.0 524 37.6
Carub.0006s3640 Capsella rubella HOM05D001988 ORTHO05D004985 7.6e-89 332.4 636 35.5
PSO513G0179 Papaver somniferum HOM05D001988 ORTHO05D004985 1.4e-87 328.2 488 43.6
Medtr5g067430 Medicago truncatula HOM05D001988 ORTHO05D004985 5.1e-85 319.7 634 34.1
SEGI_17598 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 5.1e-85 319.7 695 32.9
DCAR_007151 Daucus carota HOM05D001988 ORTHO05D004985 1.5e-84 318.2 678 32.4
SEGI_28471 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 3.3e-84 317.0 697 32.1
MBI19_g09828_MAGBIO Magnolia biondii HOM05D001988 ORTHO05D004985 1.3e-83 315.1 567 36.9
AUR62008859 Chenopodium quinoa HOM05D001988 ORTHO05D004985 2.2e-83 314.3 399 44.1
Oeu037938.2 Olea europaea HOM05D001988 ORTHO05D004985 6.9e-82 309.3 468 38.9
Eucgr.B03444 Eucalyptus grandis HOM05D001988 ORTHO05D004985 4.8e-75 286.6 451 38.6
CARHR145370 Cardamine hirsuta HOM05D001988 ORTHO05D004985 3.4e-73 280.4 448 37.5
Thhalv10004418m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 3.4e-73 280.4 356 43.0
Pp3c9_8400 Physcomitrium patens HOM05D001988 ORTHO05D004985 6.1e-62 243.0 657 27.1
Potri.010G169500 Populus trichocarpa HOM05D001988 ORTHO05D004985 4.8e-59 233.4 406 38.4
Mapoly0075s0087 Marchantia polymorpha HOM05D001988 ORTHO05D004985 2.9e-56 224.2 497 29.6
Oeu007681.1 Olea europaea HOM05D001988 ORTHO05D004985 3.8e-56 223.8 294 41.5
Hund25598 Selenicereus undatus HOM05D001988 ORTHO05D004985 8.5e-56 222.6 488 30.9
arahy.Tifrunner.gnm1.ann1.N3HM5N Arachis hypogaea HOM05D001988 ORTHO05D004985 1.0e-53 215.7 376 35.9
AagrBONN_evm.TU.Sc2ySwM_362.1334 Anthoceros agrestis HOM05D001988 ORTHO05D004985 1.1e-50 205.7 399 31.3
PGSC0003DMG400002020 Solanum tuberosum HOM05D001988 ORTHO05D004985 1.9e-47 194.9 163 55.8
ATR0782G208 Amborella trichopoda HOM05D001988 ORTHO05D004985 5.7e-44 183.3 352 36.1
Aqoxy5G02833 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 6.6e-40 169.9 224 41.1
Atru.chr11.1785 Acer truncatum HOM05D001988 ORTHO05D004985 3.6e-38 164.1 353 34.0
COL.COLO4_23013 Corchorus olitorius HOM05D001988 ORTHO05D004985 8.0e-38 162.9 635 27.2
Aqoxy5G02832 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 2.4e-34 151.4 223 41.7
Hund25529 Selenicereus undatus HOM05D001988 ORTHO05D004985 4.1e-34 150.6 254 35.0
Atru.chr11.1786 Acer truncatum HOM05D001988 ORTHO05D004985 1.0e-32 146.0 141 48.2
AagrBONN_evm.TU.Sc2ySwM_362.1335 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.9e-31 141.7 558 24.0
Peaxi162Scf00342g00711 Petunia axillaris HOM05D001988 ORTHO05D004985 2.6e-28 131.3 397 29.5
Medtr4g071850 Medicago truncatula HOM05D001988 ORTHO05D004985 3.9e-24 117.5 184 40.8
SMO239G0039 Selaginella moellendorffii HOM05D001988 ORTHO05D004985 8.6e-24 116.3 147 40.8
Actinidia31897 Actinidia chinensis HOM05D001988 ORTHO05D004985 1.5e-20 105.5 220 35.5
Aqoxy5G02834 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.1e-18 99.4 144 41.7
AagrBONN_evm.TU.Sc2ySwM_117.2968 Anthoceros agrestis HOM05D001988 ORTHO05D004985 3.2e-18 97.8 199 29.6
CARHR145380 Cardamine hirsuta HOM05D001988 ORTHO05D004985 9.2e-18 96.3 198 35.9
CARHR212720 Cardamine hirsuta HOM05D001988 ORTHO05D004985 9.2e-18 96.3 255 31.8
AagrBONN_evm.TU.Sc2ySwM_369.75 Anthoceros agrestis HOM05D001988 ORTHO05D004985 5.2e-13 80.5 205 27.3
RcHm_v2.0_Chr7g0220011 Rosa chinensis HOM05D001988 ORTHO05D004985 5.2e-13 80.5 87 48.3
RcHm_v2.0_Chr5g0048631 Rosa chinensis HOM05D001988 ORTHO05D004985 8.9e-13 79.7 120 39.2
CDE06G2098 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 2.0e-12 78.6 100 42.0
AT1G42615 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 2.9e-11 74.7 142 35.9
AL7G47160 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 3.2e-10 71.2 67 47.8
EL10As5g23508 Beta vulgaris HOM05D001988 ORTHO05D004985 1.6e-09 68.9 55 54.5
CARHR289080 Cardamine hirsuta HOM05D001988 ORTHO05D004985 3.3e-07 61.2 63 47.6
Os05g0352700 Oryza sativa ssp. japonica HOM05D001988 ORTHO05D004985 7.3e-07 60.1 163 29.4
Peaxi162Scf00342g00712 Petunia axillaris HOM05D001988 ORTHO05D004985 7.3e-07 60.1 147 29.9
MCO03G550 Micromonas commoda HOM05D001988 ORTHO05D004985 2.1e-06 58.5 125 31.2


User provided reference genes

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