Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G3048 Papaver somniferum HOM05D003639 ORTHO05D004246 5.6e-179 631.7 370 100.0
PSO832G3057 Papaver somniferum HOM05D003639 ORTHO05D004246 4.3e-171 605.5 370 91.4
Aqoxy3G00063 Aquilegia oxysepala HOM05D003639 ORTHO05D004246 1.3e-98 364.8 256 74.6
TAR369G0628 Trochodendron aralioides HOM05D003639 ORTHO05D004246 1.7e-98 364.4 255 76.1
Nn7g37752 Nelumbo nucifera HOM05D003639 ORTHO05D004246 3.6e-93 346.7 378 61.1
Hma1.2p1_2162F.1_g315680 Hydrangea macrophylla HOM05D003639 ORTHO05D004246 1.0e-92 345.1 257 70.8
MBI13_g04793_MAGBIO Magnolia biondii HOM05D003639 ORTHO05D004246 1.0e-92 345.1 254 72.8
Thecc.02G139000 Theobroma cacao HOM05D003639 ORTHO05D004246 5.7e-91 339.3 380 59.2
Actinidia39194 Actinidia chinensis HOM05D003639 ORTHO05D004246 2.8e-90 337.0 254 70.5
CDE04G0356 Ceratophyllum demersum HOM05D003639 ORTHO05D004246 3.7e-90 336.7 253 71.5
PGSC0003DMG400012703 Solanum tuberosum HOM05D003639 ORTHO05D004246 3.7e-90 336.7 256 71.5
Rhsim03G0032000 Rhododendron simsii HOM05D003639 ORTHO05D004246 8.2e-90 335.5 253 70.4
Solyc04g016510.3 Solanum lycopersicum HOM05D003639 ORTHO05D004246 1.1e-89 335.1 256 71.1
Sopen04g008580 Solanum pennellii HOM05D003639 ORTHO05D004246 1.1e-89 335.1 256 71.5
Nitab4.5_0001618g0260 Nicotiana tabacum HOM05D003639 ORTHO05D004246 3.1e-89 333.6 254 71.7
CSS0048368 Camellia sinensis var. sinensis HOM05D003639 ORTHO05D004246 5.3e-89 332.8 253 70.4
Prupe.7G050300 Prunus persica HOM05D003639 ORTHO05D004246 9.1e-89 332.0 249 71.5
Duzib132G0222 Durio zibethinus HOM05D003639 ORTHO05D004246 4.5e-88 329.7 381 58.3
CAN.G1237.4 Capsicum annuum HOM05D003639 ORTHO05D004246 5.9e-88 329.3 256 69.9
Haze_19749 Corylus avellana HOM05D003639 ORTHO05D004246 5.9e-88 329.3 253 69.2
Peaxi162Scf00130g00929 Petunia axillaris HOM05D003639 ORTHO05D004246 7.7e-88 328.9 256 70.7
Manes.09G015900 Manihot esculenta HOM05D003639 ORTHO05D004246 1.0e-87 328.6 252 70.6
Nitab4.5_0000826g0140 Nicotiana tabacum HOM05D003639 ORTHO05D004246 1.0e-87 328.6 265 69.1
TWI74G0834 Tripterygium wilfordii HOM05D003639 ORTHO05D004246 1.0e-87 328.6 255 70.6
MD12G1086300 Malus domestica HOM05D003639 ORTHO05D004246 3.8e-87 326.6 249 71.1
VMungo0720G2842 Vigna mungo HOM05D003639 ORTHO05D004246 8.5e-87 325.5 253 70.0
Duzib248G1450 Durio zibethinus HOM05D003639 ORTHO05D004246 1.5e-86 324.7 253 70.4
Oeu023136.1 Olea europaea HOM05D003639 ORTHO05D004246 3.2e-86 323.6 256 69.9
ClCG08G008940 Citrullus lanatus HOM05D003639 ORTHO05D004246 7.2e-86 322.4 253 70.0
Psat6g009840 Pisum sativum HOM05D003639 ORTHO05D004246 7.2e-86 322.4 253 69.6
Lalb_Chr21g0305241 Lupinus albus HOM05D003639 ORTHO05D004246 9.4e-86 322.0 373 56.8
DCAR_014011 Daucus carota HOM05D003639 ORTHO05D004246 1.2e-85 321.6 253 68.0
TPR.G10246 Trifolium pratense HOM05D003639 ORTHO05D004246 1.2e-85 321.6 253 67.2
Glyma.10G000800 Glycine max HOM05D003639 ORTHO05D004246 1.6e-85 321.2 246 70.3
arahy.Tifrunner.gnm1.ann1.Y8CJQK Arachis hypogaea HOM05D003639 ORTHO05D004246 3.6e-85 320.1 253 69.6
COL.COLO4_24957 Corchorus olitorius HOM05D003639 ORTHO05D004246 6.1e-85 319.3 381 57.0
Medtr3g045130 Medicago truncatula HOM05D003639 ORTHO05D004246 6.1e-85 319.3 359 55.7
arahy.Tifrunner.gnm1.ann1.6W6BYV Arachis hypogaea HOM05D003639 ORTHO05D004246 1.0e-84 318.5 253 69.2
TPR.G1512 Trifolium pratense HOM05D003639 ORTHO05D004246 1.8e-84 317.8 253 67.2
Lj5g0008946 Lotus japonicus HOM05D003639 ORTHO05D004246 2.3e-84 317.4 372 53.5
SalBow6G0945 Salvia bowleyana HOM05D003639 ORTHO05D004246 4.0e-84 316.6 382 55.8
FAN14G4828 Fragaria x ananassa HOM05D003639 ORTHO05D004246 5.2e-84 316.2 251 66.5
Ca_25791_v3 Cicer arietinum L. HOM05D003639 ORTHO05D004246 1.2e-83 315.1 371 55.3
FvH4_6g24750 Fragaria vesca HOM05D003639 ORTHO05D004246 1.5e-83 314.7 251 66.5
FAN09G0054 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.5e-83 314.7 254 65.4
Gohir.A12G015000 Gossypium hirsutum HOM05D003639 ORTHO05D004246 1.5e-83 314.7 228 74.1
Gohir.D12G015400 Gossypium hirsutum HOM05D003639 ORTHO05D004246 1.5e-83 314.7 228 74.1
Gorai.008G015500 Gossypium raimondii HOM05D003639 ORTHO05D004246 1.5e-83 314.7 228 74.1
CsaV3_6G036200 Cucumis sativus L. HOM05D003639 ORTHO05D004246 2.6e-83 313.9 253 68.4
SEGI_17823 Sequoiadendron giganteum HOM05D003639 ORTHO05D004246 2.6e-83 313.9 258 65.5
MELO3C026433.2 Cucumis melo HOM05D003639 ORTHO05D004246 3.3e-83 313.5 253 68.4
Glyma.02G190600 Glycine max HOM05D003639 ORTHO05D004246 3.3e-83 313.5 363 54.0
Hund19126 Selenicereus undatus HOM05D003639 ORTHO05D004246 3.3e-83 313.5 255 67.8
MSTRG.6401 Avicennia marina HOM05D003639 ORTHO05D004246 4.4e-83 313.2 372 53.2
AUR62026120 Chenopodium quinoa HOM05D003639 ORTHO05D004246 4.4e-83 313.2 255 67.1
EL10Ac3g07157 Beta vulgaris HOM05D003639 ORTHO05D004246 5.7e-83 312.8 254 67.7
FAN02G3905 Fragaria x ananassa HOM05D003639 ORTHO05D004246 7.5e-83 312.4 251 66.1
Phvul.007G249600 Phaseolus vulgaris HOM05D003639 ORTHO05D004246 8.2e-82 308.9 372 55.6
FAN05G0107 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.4e-81 308.1 248 65.7
Peaxi162Scf00177g10117 Petunia axillaris HOM05D003639 ORTHO05D004246 4.1e-81 306.6 256 66.4
Ah.13g076790 Amaranthus hybridus HOM05D003639 ORTHO05D004246 5.3e-81 306.2 383 51.2
Sc19g0008460 Simmondsia chinensis HOM05D003639 ORTHO05D004246 5.3e-81 306.2 384 55.5
SGA_v2.0_scaffold296G47577 Striga asiatica HOM05D003639 ORTHO05D004246 7.0e-81 305.8 255 64.7
AUR62024528 Chenopodium quinoa HOM05D003639 ORTHO05D004246 1.2e-80 305.1 377 54.9
CSS0037940 Camellia sinensis var. sinensis HOM05D003639 ORTHO05D004246 1.6e-80 304.7 242 68.2
Carub.0004s0611 Capsella rubella HOM05D003639 ORTHO05D004246 5.9e-80 302.8 252 65.5
Ciclev10006458m.g Citrus clementina HOM05D003639 ORTHO05D004246 7.7e-80 302.4 254 65.7
SGA_v2.0_scaffold69G23129 Striga asiatica HOM05D003639 ORTHO05D004246 1.0e-79 302.0 257 63.4
CiPaw.09G042100 Carya illinoinensis HOM05D003639 ORTHO05D004246 2.9e-79 300.4 253 65.2
Potri.006G045800 Populus trichocarpa HOM05D003639 ORTHO05D004246 2.9e-79 300.4 253 65.2
PGR004G0521 Punica granatum HOM05D003639 ORTHO05D004246 8.5e-79 298.9 374 54.0
Aa31LG1G23520 Aethionema arabicum HOM05D003639 ORTHO05D004246 1.9e-78 297.7 252 64.7
Cpa.g.sc120.6 Carica papaya HOM05D003639 ORTHO05D004246 1.9e-78 297.7 369 50.7
ECA234G2577 Erigeron canadensis HOM05D003639 ORTHO05D004246 1.9e-78 297.7 256 61.7
C04p69090 Brassica napus HOM05D003639 ORTHO05D004246 2.5e-78 297.4 252 64.3
BolC4t28406H Brassica oleracea HOM05D003639 ORTHO05D004246 2.5e-78 297.4 252 64.3
Dinv30299 Davidia involucrata HOM05D003639 ORTHO05D004246 2.5e-78 297.4 356 57.6
Lsat_1_v5_gn_4_41600 Lactuca sativa HOM05D003639 ORTHO05D004246 2.5e-78 297.4 375 54.4
THA.LOC104824426 Tarenaya hassleriana HOM05D003639 ORTHO05D004246 2.5e-78 297.4 250 65.6
Eucgr.A02297 Eucalyptus grandis HOM05D003639 ORTHO05D004246 4.2e-78 296.6 256 66.4
A04p31660 Brassica napus HOM05D003639 ORTHO05D004246 7.2e-78 295.8 252 63.9
BraA04t18624Z Brassica rapa HOM05D003639 ORTHO05D004246 7.2e-78 295.8 252 63.9
QL07p005224 Quercus lobata HOM05D003639 ORTHO05D004246 7.2e-78 295.8 377 52.5
Migut.J01707 Erythranthe guttata HOM05D003639 ORTHO05D004246 1.6e-77 294.7 377 49.9
unitig_44.g31550 Utricularia gibba HOM05D003639 ORTHO05D004246 1.6e-77 294.7 255 63.9
unitig_578.g16292 Utricularia gibba HOM05D003639 ORTHO05D004246 1.6e-77 294.7 255 63.9
Medtr5g022690 Medicago truncatula HOM05D003639 ORTHO05D004246 4.7e-77 293.1 241 66.8
AL4G39590 Arabidopsis lyrata HOM05D003639 ORTHO05D004246 1.0e-76 292.0 252 62.7
Thhalv10016457m.g Eutrema salsugineum HOM05D003639 ORTHO05D004246 1.4e-76 291.6 252 62.7
Hma1.2p1_0338F.1_g129500 Hydrangea macrophylla HOM05D003639 ORTHO05D004246 2.3e-76 290.8 243 65.8
Sp4g23770 Schrenkiella parvula HOM05D003639 ORTHO05D004246 4.0e-76 290.0 344 56.4
AT2G41500 Arabidopsis thaliana HOM05D003639 ORTHO05D004246 6.8e-76 289.3 251 62.5
Hma1.2p1_1333F.1_g276240 Hydrangea macrophylla HOM05D003639 ORTHO05D004246 6.8e-76 289.3 243 65.0
ATR0665G145 Amborella trichopoda HOM05D003639 ORTHO05D004246 8.8e-76 288.9 255 61.6
Thhalv10000860m.g Eutrema salsugineum HOM05D003639 ORTHO05D004246 8.8e-76 288.9 248 62.9
A05p02320 Brassica napus HOM05D003639 ORTHO05D004246 1.3e-74 285.0 252 63.1
C04p02760 Brassica napus HOM05D003639 ORTHO05D004246 1.3e-74 285.0 252 63.1
CANSAT80G2101 Cannabis sativa HOM05D003639 ORTHO05D004246 1.3e-74 285.0 225 68.0
HPP92_010210 Vanilla planifolia HOM05D000527 ORTHO05D000559 1.7e-74 284.6 253 64.4
HPP92_010189 Vanilla planifolia HOM05D003639 ORTHO05D004246 4.8e-74 283.1 253 64.4
BolC4t21916H Brassica oleracea HOM05D003639 ORTHO05D004246 8.3e-74 282.3 248 63.3
BraA05t19227Z Brassica rapa HOM05D003639 ORTHO05D004246 3.1e-73 280.4 252 61.9
CARHR136620 Cardamine hirsuta HOM05D003639 ORTHO05D004246 4.1e-73 280.0 337 58.2
Sed0002463 Sechium edule HOM05D003639 ORTHO05D004246 7.0e-73 279.3 210 71.9
CANSAT80G0359 Cannabis sativa HOM05D003639 ORTHO05D004246 5.9e-72 276.2 225 67.1
RcHm_v2.0_Chr3g0484331 Rosa chinensis HOM05D003639 ORTHO05D004246 2.3e-71 274.2 226 64.2
Os03g0355200 Oryza sativa ssp. japonica HOM05D003639 ORTHO05D004246 1.1e-70 271.9 252 59.5
Os03g0355400 Oryza sativa ssp. japonica HOM05D003639 ORTHO05D004246 1.1e-70 271.9 252 59.5
BcaNung06794 Brassica carinata HOM05D003639 ORTHO05D004246 6.8e-68 262.7 252 60.3
Lj4C34T1 Lonicera japonica HOM05D003639 ORTHO05D004246 9.8e-67 258.8 326 51.2
BcaC02g12784 Brassica carinata HOM05D003639 ORTHO05D004246 4.1e-65 253.4 251 57.8
TAR065G0005 Trochodendron aralioides HOM05D003639 ORTHO05D004246 4.1e-65 253.4 186 72.0
Atru.chr1.1191 Acer truncatum HOM05D003639 ORTHO05D004246 7.8e-64 249.2 182 74.7
Pp3c9_11970 Physcomitrium patens HOM05D003639 ORTHO05D004246 1.0e-63 248.8 262 55.7
AagrBONN_evm.TU.Sc2ySwM_117.1154 Anthoceros agrestis HOM05D003639 ORTHO05D004246 7.3e-62 242.7 267 52.8
CBR_g723 Chara braunii HOM05D003639 ORTHO05D004246 8.0e-61 239.2 254 53.5
Mapoly0061s0123 Marchantia polymorpha HOM05D003639 ORTHO05D004246 1.4e-60 238.4 271 52.0
Cc06_g18350 Coffea canephora HOM05D003639 ORTHO05D004246 9.8e-59 232.3 173 70.5
Zm00001eb017050 Zea mays HOM05D003639 ORTHO05D004246 3.5e-56 223.8 191 61.8
GSVIVG01033551001 Vitis vinifera HOM05D003639 ORTHO05D004246 3.0e-55 220.7 171 67.3
Potri.016G042250 Populus trichocarpa HOM05D003639 ORTHO05D004246 8.0e-53 212.6 288 49.0
MD14G1080500 Malus domestica HOM05D003639 ORTHO05D004246 6.8e-52 209.5 193 61.1
Mapoly0014s0154 Marchantia polymorpha HOM05D003639 ORTHO05D004246 8.9e-52 209.1 263 48.3
Sabra06G0031300 Salix brachista HOM05D003639 ORTHO05D004246 4.9e-50 203.4 253 51.4
SMO356G0612 Selaginella moellendorffii HOM05D003639 ORTHO05D004246 6.4e-50 203.0 225 50.7
Psat6g118240 Pisum sativum HOM05D003639 ORTHO05D004246 9.2e-49 199.1 214 54.2
FAN19G1783 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.9e-46 191.4 162 63.6
FAN14G5922 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.5e-46 191.0 162 63.6
FAN17G3014 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.5e-46 191.0 162 63.6
BcaB06g29187 Brassica carinata HOM05D003639 ORTHO05D004246 4.3e-46 190.3 144 64.6
FAN28G1931 Fragaria x ananassa HOM05D003639 ORTHO05D004246 5.6e-46 189.9 162 63.0
VMungo0540G1675 Vigna mungo HOM05D003639 ORTHO05D004246 5.6e-46 189.9 185 55.7
FAN03G0195 Fragaria x ananassa HOM05D003639 ORTHO05D004246 7.3e-46 189.5 162 63.0
FAN07G1748 Fragaria x ananassa HOM05D003639 ORTHO05D004246 7.3e-46 189.5 162 63.0
FAN10G2664 Fragaria x ananassa HOM05D003639 ORTHO05D004246 7.3e-46 189.5 162 63.0
FAN23G2202 Fragaria x ananassa HOM05D003639 ORTHO05D004246 7.3e-46 189.5 162 63.0
FAN13G2401 Fragaria x ananassa HOM05D003639 ORTHO05D004246 9.5e-46 189.1 162 63.0
FAN24G0290 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.2e-45 188.7 162 63.0
FAN01G0512 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.1e-45 188.0 162 63.0
FAN06G0994 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.8e-45 187.6 162 62.3
FAN27G3180 Fragaria x ananassa HOM05D003639 ORTHO05D004246 6.2e-45 186.4 162 62.3
BcaNung04072 Brassica carinata HOM05D003639 ORTHO05D004246 1.8e-44 184.9 150 64.0
FAN22G1757 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.8e-44 184.9 162 61.7
FAN09G4382 Fragaria x ananassa HOM05D003639 ORTHO05D004246 4.4e-43 180.3 157 62.4
Sed0000547 Sechium edule HOM05D003639 ORTHO05D004246 1.3e-42 178.7 160 63.8
FAN16G0989 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.2e-42 177.9 162 61.1
FAN25G1774 Fragaria x ananassa HOM05D003639 ORTHO05D004246 3.8e-34 150.6 162 53.1
RcHm_v2.0_Chr3g0484501 Rosa chinensis HOM05D003639 ORTHO05D004246 4.1e-33 147.1 99 72.7
MELO3C019779.2 Cucumis melo HOM05D003639 ORTHO05D004246 1.6e-32 145.2 184 50.0
AT2G05720 Arabidopsis thaliana HOM05D003639 ORTHO05D004246 3.5e-32 144.1 141 51.8
RcHm_v2.0_Chr3g0484401 Rosa chinensis HOM05D003639 ORTHO05D004246 3.9e-31 140.6 100 71.0
FAN17G0086 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.5e-30 138.7 115 64.3
BolC5t34692H Brassica oleracea HOM05D003639 ORTHO05D004246 1.6e-29 135.2 144 56.9
vmacro21947 Vaccinium macrocarpon HOM05D003639 ORTHO05D004246 6.2e-29 133.3 252 40.1
MCO12G002 Micromonas commoda HOM05D003639 ORTHO05D004246 1.8e-28 131.7 247 38.1
Atru.chr6.1379 Acer truncatum HOM05D003639 ORTHO05D004246 3.4e-27 127.5 77 80.5
Medtr0012s0110 Medicago truncatula HOM05D003639 ORTHO05D004246 5.4e-25 120.2 219 40.6
AL3G43260 Arabidopsis lyrata HOM05D003639 ORTHO05D004246 1.4e-20 105.5 82 61.0
Cre16.g662800 Chlamydomonas reinhardtii HOM05D003639 ORTHO05D004246 5.3e-20 103.6 133 44.4
Atru.chr6.1378 Acer truncatum HOM05D003639 ORTHO05D004246 1.2e-19 102.4 77 72.7
Psat4g106880 Pisum sativum HOM05D003639 ORTHO05D004246 3.0e-15 87.8 120 47.5
Cfa024100 Carpinus fangiana HOM05D003639 ORTHO05D004246 5.1e-15 87.0 217 30.0
PRCOL_00003365 Prasinoderma coloniale HOM05D003639 ORTHO05D004246 1.6e-13 82.0 202 37.1
MELO3C019777.2 Cucumis melo HOM05D003639 ORTHO05D004246 9.3e-09 66.2 172 34.9
QL04p089213 Quercus lobata HOM05D003639 ORTHO05D004246 4.6e-08 63.9 115 40.0
Lj4A34T49 Lonicera japonica HOM05D003639 ORTHO05D004246 6.0e-08 63.5 51 66.7
Atru.chr1.1192 Acer truncatum HOM05D003639 ORTHO05D004246 3.0e-07 61.2 51 64.7
Atru.chr6.1380 Acer truncatum HOM05D003639 ORTHO05D004246 5.1e-07 60.5 51 64.7
QL05p082994 Quercus lobata HOM05D003639 ORTHO05D004246 1.1e-06 59.3 174 31.6
Zm00001eb344450 Zea mays HOM05D003639 ORTHO05D004246 2.5e-06 58.2 52 53.8


User provided reference genes

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