Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G5970 Papaver somniferum HOM05D005584 ORTHO05D006809 1.0e-128 463.4 230 100.0
PSO478G2901 Papaver somniferum HOM05D005584 ORTHO05D006809 8.4e-123 443.7 230 97.0
TAR374G1289 Trochodendron aralioides HOM05D005584 ORTHO05D006809 1.4e-85 320.1 231 70.6
GSVIVG01013774001 Vitis vinifera HOM05D005584 ORTHO05D006809 3.3e-79 298.9 231 67.1
Aqoxy3G01083 Aquilegia oxysepala HOM05D005584 ORTHO05D006809 3.7e-78 295.4 231 64.5
Dinv15274 Davidia involucrata HOM05D001482 ORTHO05D001499 5.3e-77 291.6 231 65.4
Hma1.2p1_0587F.1_g184080 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 7.0e-77 291.2 231 67.1
RcHm_v2.0_Chr5g0041131 Rosa chinensis HOM05D005584 ORTHO05D006809 5.9e-76 288.1 231 66.2
Cpa.g.sc69.68 Carica papaya HOM05D005584 ORTHO05D006809 5.0e-75 285.0 231 64.5
FAN16G0047 Fragaria x ananassa HOM05D005584 ORTHO05D006809 5.0e-75 285.0 231 64.9
MBI10_g28000_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 5.0e-75 285.0 238 64.3
Sopen08g021760 Solanum pennellii HOM05D005584 ORTHO05D006809 1.9e-74 283.1 233 63.9
TWI18G1102 Tripterygium wilfordii HOM05D005584 ORTHO05D006809 1.9e-74 283.1 233 64.8
PGSC0003DMG400033619 Solanum tuberosum HOM05D005584 ORTHO05D006809 2.5e-74 282.7 233 63.5
arahy.Tifrunner.gnm1.ann1.0L0HR0 Arachis hypogaea HOM05D005584 ORTHO05D006809 3.2e-74 282.3 232 62.9
arahy.Tifrunner.gnm1.ann1.5FW2L6 Arachis hypogaea HOM05D005584 ORTHO05D006809 3.2e-74 282.3 232 62.9
Duzib251G0376 Durio zibethinus HOM05D005584 ORTHO05D006809 3.2e-74 282.3 230 61.7
MD11G1211500 Malus domestica HOM05D005584 ORTHO05D006809 5.5e-74 281.6 231 62.3
CANSAT56G2850 Cannabis sativa HOM05D005584 ORTHO05D006809 7.2e-74 281.2 230 63.5
COL.COLO4_24203 Corchorus olitorius HOM05D005584 ORTHO05D006809 9.4e-74 280.8 230 61.3
FvH4_3g23340 Fragaria vesca HOM05D005584 ORTHO05D006809 9.4e-74 280.8 231 64.9
FAN21G3548 Fragaria x ananassa HOM05D005584 ORTHO05D006809 9.4e-74 280.8 231 64.9
FAN25G2737 Fragaria x ananassa HOM05D005584 ORTHO05D006809 2.7e-73 279.3 231 64.5
Solyc08g067820.3 Solanum lycopersicum HOM05D005584 ORTHO05D006809 2.7e-73 279.3 233 63.1
Prupe.4G221000 Prunus persica HOM05D005584 ORTHO05D006809 4.7e-73 278.5 237 62.0
Potri.009G167600 Populus trichocarpa HOM05D005584 ORTHO05D006809 6.1e-73 278.1 235 62.1
Thecc.02G253500 Theobroma cacao HOM05D005584 ORTHO05D006809 6.1e-73 278.1 230 61.7
Gohir.A01G162200 Gossypium hirsutum HOM05D005584 ORTHO05D006809 2.3e-72 276.2 230 61.3
Ca_28318_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 4.0e-72 275.4 230 63.5
Nn4g22723 Nelumbo nucifera HOM05D005584 ORTHO05D006809 6.8e-72 274.6 233 63.9
Lalb_Chr12g0210051 Lupinus albus HOM05D005584 ORTHO05D006809 8.8e-72 274.2 231 62.3
Nn2g14080 Nelumbo nucifera HOM05D005584 ORTHO05D006809 8.8e-72 274.2 233 63.9
CSS0030415 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 1.5e-71 273.5 231 62.8
Sabra09G0130200 Salix brachista HOM05D005584 ORTHO05D006809 5.7e-71 271.6 235 60.9
Ciclev10032655m.g Citrus clementina HOM05D005584 ORTHO05D006809 7.5e-71 271.2 231 60.6
Lj1g0002439 Lotus japonicus HOM05D005584 ORTHO05D006809 9.8e-71 270.8 230 63.0
vmacro01156 Vaccinium macrocarpon HOM05D005584 ORTHO05D006809 9.8e-71 270.8 232 62.5
Manes.12G026800 Manihot esculenta HOM05D005584 ORTHO05D006809 2.2e-70 269.6 232 62.1
Gohir.D08G021700 Gossypium hirsutum HOM05D005584 ORTHO05D006809 2.8e-70 269.2 230 60.0
Actinidia08155 Actinidia chinensis HOM05D005584 ORTHO05D006809 3.7e-70 268.9 232 62.9
Lj3g0022996 Lotus japonicus HOM05D005584 ORTHO05D006809 1.4e-69 266.9 230 62.6
Gohir.D05G347832 Gossypium hirsutum HOM05D005584 ORTHO05D006809 3.1e-69 265.8 230 59.1
Medtr5g077780 Medicago truncatula HOM05D005584 ORTHO05D006809 4.1e-69 265.4 230 61.3
Gohir.D01G149500 Gossypium hirsutum HOM05D005584 ORTHO05D006809 5.4e-69 265.0 230 59.6
Atru.chr11.2060 Acer truncatum HOM05D005584 ORTHO05D006809 7.0e-69 264.6 231 59.7
CSS0021029 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 9.1e-69 264.2 230 60.9
Psat2g045680 Pisum sativum HOM05D005584 ORTHO05D006809 1.2e-68 263.8 238 60.9
QL03p059496 Quercus lobata HOM05D005584 ORTHO05D006809 2.0e-68 263.1 230 60.9
PGR142G0158 Punica granatum HOM05D005584 ORTHO05D006809 3.5e-68 262.3 232 62.9
Migut.E00177 Erythranthe guttata HOM05D005584 ORTHO05D006809 4.5e-68 261.9 234 62.0
Haze_12208 Corylus avellana HOM05D005584 ORTHO05D006809 1.3e-67 260.4 230 61.3
CiPaw.05G185800 Carya illinoinensis HOM05D005584 ORTHO05D006809 1.7e-67 260.0 232 61.6
AUR62014068 Chenopodium quinoa HOM05D005584 ORTHO05D006809 3.8e-67 258.8 231 58.4
Phvul.011G052800 Phaseolus vulgaris HOM05D005584 ORTHO05D006809 5.0e-67 258.5 230 60.0
Oeu056410.1 Olea europaea HOM05D005584 ORTHO05D006809 6.6e-67 258.1 230 60.9
MSTRG.2403 Avicennia marina HOM05D005584 ORTHO05D006809 8.6e-67 257.7 230 57.4
Lsat_1_v5_gn_9_120260 Lactuca sativa HOM05D005584 ORTHO05D006809 8.6e-67 257.7 235 59.1
Eucgr.K03598 Eucalyptus grandis HOM05D005584 ORTHO05D006809 1.1e-66 257.3 233 59.7
FAN11G0752 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.6e-65 253.4 205 64.4
Peaxi162Scf00105g01417 Petunia axillaris HOM05D005584 ORTHO05D006809 1.6e-65 253.4 218 59.2
ECA233G2638 Erigeron canadensis HOM05D005584 ORTHO05D006809 8.0e-65 251.1 233 57.9
Thhalv10017205m.g Eutrema salsugineum HOM05D005584 ORTHO05D006809 1.0e-64 250.8 239 54.8
Carub.0004s0855 Capsella rubella HOM05D005584 ORTHO05D006809 8.9e-64 247.7 236 55.9
Cc08_g15830 Coffea canephora HOM05D005584 ORTHO05D006809 8.9e-64 247.7 231 58.9
CsaV3_2G024710 Cucumis sativus L. HOM05D005584 ORTHO05D006809 8.9e-64 247.7 230 57.8
AL4G22490 Arabidopsis lyrata HOM05D005584 ORTHO05D006809 1.2e-63 247.3 236 55.5
Sed0009924 Sechium edule HOM05D005584 ORTHO05D006809 1.2e-63 247.3 237 57.4
Cfa009174 Carpinus fangiana HOM05D005584 ORTHO05D006809 4.4e-63 245.4 208 62.5
A07p18380 Brassica napus HOM05D005584 ORTHO05D006809 7.5e-63 244.6 239 54.8
BraA07t29554Z Brassica rapa HOM05D005584 ORTHO05D006809 9.8e-63 244.2 239 54.4
Sp4g10620 Schrenkiella parvula HOM05D005584 ORTHO05D006809 2.2e-62 243.0 239 56.1
CARHR120490 Cardamine hirsuta HOM05D005584 ORTHO05D006809 4.9e-62 241.9 236 55.5
Rhsim12G0043700 Rhododendron simsii HOM05D005584 ORTHO05D006809 1.1e-61 240.7 239 56.1
BcaC02g10906 Brassica carinata HOM05D005584 ORTHO05D006809 3.1e-61 239.2 239 54.0
Hund25366 Selenicereus undatus HOM05D005584 ORTHO05D003410 5.4e-61 238.4 277 49.8
C04p23810 Brassica napus HOM05D005584 ORTHO05D006809 9.2e-61 237.7 239 53.6
HanXRQChr12g0371541 Helianthus annuus HOM05D005584 ORTHO05D006809 1.2e-60 237.3 209 59.8
BolC4t23879H Brassica oleracea HOM05D005584 ORTHO05D006809 4.5e-60 235.3 239 53.1
VMungo1127G1231 Vigna mungo HOM05D005584 ORTHO05D006809 4.5e-60 235.3 210 60.5
Zm00001eb209860 Zea mays HOM05D005584 ORTHO05D006809 1.7e-59 233.4 267 51.7
BcaB02g10116 Brassica carinata HOM05D005584 ORTHO05D006809 6.6e-59 231.5 209 56.5
SalBow8G4058 Salvia bowleyana HOM05D005584 ORTHO05D006809 8.6e-59 231.1 224 57.1
Nitab4.5_0006579g0040 Nicotiana tabacum HOM05D005584 ORTHO05D006809 7.3e-58 228.0 188 61.2
SGA_v2.0_scaffold57G20112 Striga asiatica HOM05D005584 ORTHO05D006809 7.3e-58 228.0 203 59.6
unitig_62.g23668 Utricularia gibba HOM05D005584 ORTHO05D006809 2.1e-57 226.5 232 55.2
HPP92_004538 Vanilla planifolia HOM05D005584 ORTHO05D006809 3.6e-57 225.7 218 56.4
ClCG08G017930 Citrullus lanatus HOM05D005584 ORTHO05D006809 8.9e-56 221.1 213 56.8
Glyma.12G050500 Glycine max HOM05D005584 ORTHO05D006809 1.5e-55 220.3 186 62.9
Nitab4.5_0000125g0200 Nicotiana tabacum HOM05D005584 ORTHO05D006809 2.6e-55 219.5 155 67.7
ATR1091G072 Amborella trichopoda HOM05D005584 ORTHO05D006809 2.2e-54 216.5 212 58.5
Lj6A807T86 Lonicera japonica HOM05D005584 ORTHO05D006809 2.4e-53 213.0 233 53.6
Aa31LG5G8210 Aethionema arabicum HOM05D005584 ORTHO05D006809 4.1e-53 212.2 267 46.8
Gorai.009G374800 Gossypium raimondii HOM05D005584 ORTHO05D006809 4.1e-53 212.2 230 52.2
CDE06G1284 Ceratophyllum demersum HOM05D005584 ORTHO05D006809 7.0e-53 211.5 232 53.0
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 1.6e-52 210.3 229 54.6
AT5G27300 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 3.5e-52 209.1 222 52.7
EL10Ac6g13701 Beta vulgaris HOM05D005584 ORTHO05D006809 1.0e-51 207.6 231 51.5
AUR62005408 Chenopodium quinoa HOM05D005584 ORTHO05D006809 8.6e-51 204.5 231 50.6
Lsat_1_v5_gn_8_155560 Lactuca sativa HOM05D005584 ORTHO05D006809 7.3e-50 201.4 209 55.0
SGA_v2.0_scaffold74G24685 Striga asiatica HOM05D005584 ORTHO05D006809 3.6e-49 199.1 200 56.0
Hma1.2p1_0223F.1_g094390 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 3.1e-48 196.1 179 62.0
SEGI_24248 Sequoiadendron giganteum HOM05D005584 ORTHO05D006809 6.8e-48 194.9 258 47.3
Dinv24830 Davidia involucrata HOM05D005584 ORTHO05D006809 3.4e-47 192.6 179 59.8
Gorai.002G185600 Gossypium raimondii HOM05D005584 ORTHO05D006809 6.4e-46 188.3 231 48.5
Mapoly0029s0094 Marchantia polymorpha HOM05D005584 ORTHO05D006809 1.4e-45 187.2 264 45.1
TPR.G25316 Trifolium pratense HOM05D005584 ORTHO05D006809 3.2e-45 186.0 122 73.0
Sc11g0001080 Simmondsia chinensis HOM05D005584 ORTHO05D006809 2.3e-43 179.9 179 55.9
DCAR_026533 Daucus carota HOM05D005584 ORTHO05D006809 4.3e-42 175.6 170 57.1
Pp3c16_13430 Physcomitrium patens HOM05D005584 ORTHO05D006809 3.6e-41 172.6 255 44.3
BcaB06g28170 Brassica carinata HOM05D005584 ORTHO05D006809 4.7e-41 172.2 168 51.8
Potri.006G221301 Populus trichocarpa HOM05D005584 ORTHO05D006809 2.6e-39 166.4 222 45.9
Ah.02g130030 Amaranthus hybridus HOM05D005584 ORTHO05D006809 4.9e-38 162.2 192 50.0
MELO3C010671.2 Cucumis melo HOM05D005584 ORTHO05D006809 8.3e-38 161.4 232 45.3
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 1.4e-37 160.6 112 67.9
Eucgr.D00612 Eucalyptus grandis HOM05D005584 ORTHO05D006809 9.2e-37 157.9 129 61.2
Gorai.001G098200 Gossypium raimondii HOM05D005584 ORTHO05D006809 6.6e-35 151.8 215 40.9
AT2G27790 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 9.5e-34 147.9 199 44.7
CAN.G21.11 Capsicum annuum HOM05D005584 ORTHO05D006809 9.9e-31 137.9 94 70.2
QL01p007518 Quercus lobata HOM05D005584 ORTHO05D006809 6.4e-22 108.6 177 40.7
SHI17678 Sapria himalayana HOM05D005584 ORTHO05D006809 3.2e-21 106.3 74 71.6
SMO361G0752 Selaginella moellendorffii HOM05D005584 ORTHO05D006809 6.6e-19 98.6 67 62.7
Hund18879 Selenicereus undatus HOM05D005584 ORTHO05D006809 8.7e-19 98.2 150 42.7
CBR_g19306 Chara braunii HOM05D005584 ORTHO05D006809 1.6e-17 94.0 99 48.5
COL.COLO4_24201 Corchorus olitorius HOM05D005584 ORTHO05D006809 8.1e-17 91.7 57 68.4
Ca_05838_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 1.3e-14 84.3 49 75.5
Os02g0105000 Oryza sativa ssp. japonica HOM05D005584 ORTHO05D006809 2.2e-14 83.6 48 85.4
BcaB05g23234 Brassica carinata HOM05D005584 ORTHO05D006809 2.9e-14 83.2 54 74.1
CAN.G414.8 Capsicum annuum HOM05D000928 ORTHO05D001186 2.9e-14 83.2 50 68.0
MBI12_g21981_MAGBIO Magnolia biondii HOM05D001465 ORTHO05D001434 3.5e-12 76.3 48 79.2
MBI02_g44783_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 7.9e-12 75.1 48 79.2
MBI02_g20871_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 1.0e-11 74.7 48 79.2
MBI14_g03623_MAGBIO Magnolia biondii HOM05D000013 ORTHO05D006809 1.0e-11 74.7 64 62.5
Gorai.004G016800 Gossypium raimondii HOM05D005584 ORTHO05D006809 1.8e-11 73.9 71 56.3
MBI02_g25373_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 2.3e-11 73.6 48 77.1
MBI19_g26621_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 9.6e-10 68.2 43 76.7
MBI14_g10639_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 2.1e-09 67.0 58 62.1
MBI03_g02127_MAGBIO Magnolia biondii HOM05D002786 ORTHO05D006809 1.2e-07 61.2 33 87.9
Glyma.11G125900 Glycine max HOM05D005584 ORTHO05D006809 1.0e-06 58.2 29 86.2
Gohir.D07G091700 Gossypium hirsutum HOM05D005584 ORTHO05D006809 2.2e-06 57.0 93 38.7


User provided reference genes

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