Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G3571 Papaver somniferum HOM05D001988 ORTHO05D004985 0.0e+00 1261.5 620 100.0
PSO063G4641 Papaver somniferum HOM05D001988 ORTHO05D004985 0.0e+00 1101.3 613 89.6
Nn4g23157 Nelumbo nucifera HOM05D001988 ORTHO05D004985 3.5e-131 473.0 703 41.1
Aqoxy1G01101 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 8.6e-130 468.4 698 40.3
Cfa008981 Carpinus fangiana HOM05D001988 ORTHO05D004985 3.6e-128 463.0 710 40.3
THA.LOC104805159 Tarenaya hassleriana HOM05D001988 ORTHO05D004985 1.8e-127 460.7 679 40.8
GSVIVG01019982001 Vitis vinifera HOM05D001988 ORTHO05D004985 4.0e-127 459.5 634 42.4
Eucgr.B03445 Eucalyptus grandis HOM05D001988 ORTHO05D004985 1.2e-126 458.0 688 40.0
QL03p064038 Quercus lobata HOM05D001988 ORTHO05D004985 1.5e-126 457.6 718 39.1
Cpa.g.sc128.24 Carica papaya HOM05D001988 ORTHO05D004985 2.0e-126 457.2 704 39.3
QL03p063402 Quercus lobata HOM05D001988 ORTHO05D004985 4.4e-126 456.1 718 39.0
PGR102G2417 Punica granatum HOM05D001988 ORTHO05D004985 8.3e-125 451.8 683 40.6
vmacro01260 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 2.1e-123 447.2 703 40.3
Actinidia19875 Actinidia chinensis HOM05D001988 ORTHO05D004985 4.6e-123 446.0 686 40.8
Manes.01G185700 Manihot esculenta HOM05D001988 ORTHO05D004985 7.8e-123 445.3 708 38.4
Rhsim12G0063800 Rhododendron simsii HOM05D001988 ORTHO05D004985 8.6e-122 441.8 712 39.0
HanXRQChr09g0255131 Helianthus annuus HOM05D001988 ORTHO05D004985 1.1e-121 441.4 630 41.7
TWI53G0339 Tripterygium wilfordii HOM05D001988 ORTHO05D004985 3.3e-121 439.9 668 39.8
Lj8A318G47 Lonicera japonica HOM05D001988 ORTHO05D004985 5.6e-121 439.1 666 40.7
HanXRQChr05g0145521 Helianthus annuus HOM05D001988 ORTHO05D004985 2.8e-120 436.8 643 41.1
CANSAT54G1389 Cannabis sativa HOM05D001988 ORTHO05D004985 2.3e-119 433.7 714 37.8
Lsat_1_v5_gn_5_156781 Lactuca sativa HOM05D001988 ORTHO05D004985 6.8e-119 432.2 635 40.8
Psat7g139200 Pisum sativum HOM05D001988 ORTHO05D004985 1.5e-118 431.0 671 39.2
Sabra10G0129300 Salix brachista HOM05D001988 ORTHO05D004985 1.5e-118 431.0 678 38.9
Lsat_1_v5_gn_8_100701 Lactuca sativa HOM05D001988 ORTHO05D004985 2.0e-118 430.6 624 40.4
MD04G1025400 Malus domestica HOM05D001988 ORTHO05D004985 2.6e-118 430.3 673 38.3
Ciclev10030768m.g Citrus clementina HOM05D001988 ORTHO05D004985 2.9e-117 426.8 724 37.8
Sed0003814 Sechium edule HOM05D001988 ORTHO05D004985 3.7e-117 426.4 700 37.7
Prupe.1G174900 Prunus persica HOM05D001988 ORTHO05D004985 6.4e-117 425.6 682 38.3
ClCG11G010950 Citrullus lanatus HOM05D001988 ORTHO05D004985 8.4e-117 425.2 695 38.6
Glyma.11G111300 Glycine max HOM05D001988 ORTHO05D004985 8.4e-117 425.2 703 36.7
SHI13475 Sapria himalayana HOM05D001988 ORTHO05D004985 1.1e-116 424.9 647 38.9
Aa31LG2G7390 Aethionema arabicum HOM05D001988 ORTHO05D004985 3.2e-116 423.3 670 39.7
Ca_20931_v3 Cicer arietinum L. HOM05D001988 ORTHO05D004985 2.1e-115 420.6 698 39.3
Phvul.011G039300 Phaseolus vulgaris HOM05D001988 ORTHO05D004985 2.1e-115 420.6 709 36.8
PGSC0003DMG401018705 Solanum tuberosum HOM05D001988 ORTHO05D004985 2.7e-115 420.2 631 41.5
ECA248G0899 Erigeron canadensis HOM05D001988 ORTHO05D004985 4.6e-115 419.5 635 39.5
Solyc11g071540.2 Solanum lycopersicum HOM05D001988 ORTHO05D004985 1.3e-114 417.9 631 41.5
Duzib251G0871 Durio zibethinus HOM05D001988 ORTHO05D004985 2.3e-114 417.2 708 37.0
Thecc.02G346500 Theobroma cacao HOM05D001988 ORTHO05D004985 6.6e-114 415.6 700 37.9
AUR62005788 Chenopodium quinoa HOM05D001988 ORTHO05D004985 8.6e-114 415.2 713 36.6
Sopen11g029230 Solanum pennellii HOM05D001988 ORTHO05D004985 8.6e-114 415.2 631 41.8
vmacro01166 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 8.6e-114 415.2 716 37.3
VMungo1127G0715 Vigna mungo HOM05D001988 ORTHO05D004985 1.5e-113 414.5 692 37.4
CAN.G439.30 Capsicum annuum HOM05D001988 ORTHO05D004985 2.5e-113 413.7 618 41.6
Gorai.009G324500 Gossypium raimondii HOM05D001988 ORTHO05D004985 2.5e-113 413.7 696 36.9
MELO3C008752.2 Cucumis melo HOM05D001988 ORTHO05D004985 7.3e-113 412.1 723 36.7
Gohir.D05G304800 Gossypium hirsutum HOM05D001988 ORTHO05D004985 1.2e-112 411.4 696 37.1
Lalb_Chr14g0368981 Lupinus albus HOM05D001988 ORTHO05D004985 1.2e-112 411.4 704 36.6
Medtr4g057650 Medicago truncatula HOM05D001988 ORTHO05D004985 2.4e-111 407.1 647 40.0
Lj3g0010541 Lotus japonicus HOM05D001988 ORTHO05D004985 3.1e-111 406.8 688 38.4
ECA234G0637 Erigeron canadensis HOM05D001988 ORTHO05D004985 4.0e-111 406.4 631 38.5
EL10Ac6g13205 Beta vulgaris HOM05D001988 ORTHO05D004985 8.9e-111 405.2 687 37.4
AT2G02955 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 2.0e-110 404.1 660 38.6
CSS0030030 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D004985 2.0e-110 404.1 716 37.2
SalBow1G3615 Salvia bowleyana HOM05D001988 ORTHO05D004985 7.6e-110 402.1 644 38.5
FAN21G2649 Fragaria x ananassa HOM05D001988 ORTHO05D004985 1.7e-109 401.0 688 36.6
Haze_12013 Corylus avellana HOM05D001988 ORTHO05D004985 2.2e-109 400.6 831 33.6
Hund05880 Selenicereus undatus HOM05D001988 ORTHO05D004985 2.2e-109 400.6 718 35.7
Peaxi162Scf00217g00713 Petunia axillaris HOM05D001988 ORTHO05D004985 4.9e-109 399.4 671 37.7
BolC8t52776H Brassica oleracea HOM05D001988 ORTHO05D004985 8.4e-109 398.7 671 38.5
Nitab4.5_0007649g0010 Nicotiana tabacum HOM05D001988 ORTHO05D004985 8.4e-109 398.7 683 38.7
TPR.G27077 Trifolium pratense HOM05D001988 ORTHO05D004985 8.4e-109 398.7 640 38.6
Migut.F02100 Erythranthe guttata HOM05D001988 ORTHO05D004985 1.1e-108 398.3 630 39.0
FvH4_3g26291 Fragaria vesca HOM05D001988 ORTHO05D004985 1.4e-108 397.9 688 36.5
AL5G12570 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 1.9e-108 397.5 676 37.6
C08p52490 Brassica napus HOM05D001988 ORTHO05D004985 1.9e-108 397.5 671 38.0
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 2.4e-108 397.1 688 36.6
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 5.4e-108 396.0 688 36.3
CiPaw.05G135300 Carya illinoinensis HOM05D001988 ORTHO05D004985 2.1e-107 394.0 567 40.7
A09p68050 Brassica napus HOM05D001988 ORTHO05D004985 4.6e-107 392.9 669 37.4
BraA09t42140Z Brassica rapa HOM05D001988 ORTHO05D004985 1.0e-106 391.7 671 37.6
Nitab4.5_0000428g0180 Nicotiana tabacum HOM05D001988 ORTHO05D004985 1.0e-106 391.7 676 38.8
Sp7g05500 Schrenkiella parvula HOM05D001988 ORTHO05D004985 3.0e-106 390.2 671 37.3
arahy.Tifrunner.gnm1.ann1.41IR6N Arachis hypogaea HOM05D001988 ORTHO05D004985 3.9e-106 389.8 720 35.6
BcaC07g42212 Brassica carinata HOM05D001988 ORTHO05D004985 3.9e-106 389.8 633 38.2
arahy.Tifrunner.gnm1.ann1.8UN484 Arachis hypogaea HOM05D001988 ORTHO05D004985 5.1e-106 389.4 720 35.6
arahy.Tifrunner.gnm1.ann1.AY0VQT Arachis hypogaea HOM05D001988 ORTHO05D004985 1.1e-105 388.3 721 35.4
Gohir.A05G183600 Gossypium hirsutum HOM05D001988 ORTHO05D004985 1.1e-105 388.3 697 36.3
Lsat_1_v5_gn_4_55321 Lactuca sativa HOM05D001988 ORTHO05D004985 1.1e-105 388.3 613 38.5
CsaV3_2G009530 Cucumis sativus L. HOM05D001988 ORTHO05D004985 2.5e-105 387.1 595 38.2
Carub.0005s0183 Capsella rubella HOM05D001988 ORTHO05D004985 3.3e-105 386.7 686 36.2
Cc09_g03970 Coffea canephora HOM05D001988 ORTHO05D004985 3.3e-105 386.7 663 37.3
EL10Ac9g22126 Beta vulgaris HOM05D001988 ORTHO05D004985 9.6e-105 385.2 731 34.1
Medtr4g071660 Medicago truncatula HOM05D001988 ORTHO05D004985 4.8e-104 382.9 632 39.2
Sc11g0001930 Simmondsia chinensis HOM05D001988 ORTHO05D004985 4.8e-104 382.9 660 37.7
Ah.05g179340 Amaranthus hybridus HOM05D001988 ORTHO05D004985 1.1e-103 381.7 700 34.4
TPR.G16225 Trifolium pratense HOM05D001988 ORTHO05D004985 1.1e-103 381.7 632 39.2
SGA_v2.0_scaffold58G20462 Striga asiatica HOM05D001988 ORTHO05D004985 1.4e-103 381.3 621 38.5
MSTRG.27418 Avicennia marina HOM05D001988 ORTHO05D004985 1.8e-103 380.9 690 35.2
Thhalv10027666m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 1.8e-103 380.9 653 38.6
FAN25G3456 Fragaria x ananassa HOM05D001988 ORTHO05D004985 9.9e-102 375.2 661 36.6
Sopen09g001990 Solanum pennellii HOM05D001988 ORTHO05D004985 1.3e-101 374.8 629 37.8
AUR62028773 Chenopodium quinoa HOM05D001988 ORTHO05D004985 1.4e-100 371.3 610 37.5
Solyc09g007120.4 Solanum lycopersicum HOM05D001988 ORTHO05D004985 3.2e-100 370.2 624 37.8
Dinv16646 Davidia involucrata HOM05D001988 ORTHO05D004985 4.2e-100 369.8 399 49.9
TAR629G1399 Trochodendron aralioides HOM05D001988 ORTHO05D004985 1.6e-99 367.9 506 42.7
Migut.I00421 Erythranthe guttata HOM05D001988 ORTHO05D004985 1.7e-98 364.4 596 37.8
CDE07G0941 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 5.1e-98 362.8 572 38.3
AL6G52060 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 6.2e-96 355.9 625 37.3
unitig_60.g25620 Utricularia gibba HOM05D001988 ORTHO05D004985 9.9e-94 348.6 634 35.5
RcHm_v2.0_Chr7g0220021 Rosa chinensis HOM05D001988 ORTHO05D004985 3.8e-93 346.7 523 39.2
RcHm_v2.0_Chr5g0048641 Rosa chinensis HOM05D001988 ORTHO05D004985 4.2e-92 343.2 523 38.8
Hma1.2p1_0265F.1_g106750 Hydrangea macrophylla HOM05D001988 ORTHO05D004985 9.3e-92 342.0 384 47.7
Zm00001eb284870 Zea mays HOM05D001988 ORTHO05D004985 2.1e-91 340.9 528 37.9
Carub.0006s3640 Capsella rubella HOM05D001988 ORTHO05D004985 1.3e-90 338.2 649 36.2
HPP92_021577 Vanilla planifolia HOM05D001988 ORTHO05D004985 3.3e-89 333.6 691 34.2
Medtr5g067430 Medicago truncatula HOM05D001988 ORTHO05D004985 3.1e-87 327.0 641 34.2
DCAR_007151 Daucus carota HOM05D001988 ORTHO05D004985 9.0e-87 325.5 673 33.1
SEGI_17598 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 1.3e-85 321.6 706 32.6
AUR62008859 Chenopodium quinoa HOM05D001988 ORTHO05D004985 4.9e-85 319.7 406 43.6
MBI19_g09828_MAGBIO Magnolia biondii HOM05D001988 ORTHO05D004985 2.5e-84 317.4 509 38.3
SEGI_28471 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 3.2e-84 317.0 697 31.4
Oeu037938.2 Olea europaea HOM05D001988 ORTHO05D004985 7.9e-83 312.4 468 39.1
Eucgr.B03444 Eucalyptus grandis HOM05D001988 ORTHO05D004985 9.0e-79 298.9 452 39.8
CARHR145370 Cardamine hirsuta HOM05D001988 ORTHO05D004985 6.5e-77 292.7 448 38.6
PSO513G0179 Papaver somniferum HOM05D001988 ORTHO05D004985 5.5e-76 289.7 457 41.1
Thhalv10004418m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 7.9e-75 285.8 356 43.5
Pp3c9_8400 Physcomitrium patens HOM05D001988 ORTHO05D004985 9.4e-60 235.7 656 27.1
Potri.010G169500 Populus trichocarpa HOM05D001988 ORTHO05D004985 2.1e-59 234.6 377 38.5
Oeu007681.1 Olea europaea HOM05D001988 ORTHO05D004985 2.0e-57 228.0 294 42.5
Mapoly0075s0087 Marchantia polymorpha HOM05D001988 ORTHO05D004985 9.7e-57 225.7 499 30.7
Hund25598 Selenicereus undatus HOM05D001988 ORTHO05D004985 9.1e-55 219.2 491 31.0
arahy.Tifrunner.gnm1.ann1.N3HM5N Arachis hypogaea HOM05D001988 ORTHO05D004985 1.7e-53 214.9 377 35.3
AagrBONN_evm.TU.Sc2ySwM_362.1334 Anthoceros agrestis HOM05D001988 ORTHO05D004985 3.0e-50 204.1 396 31.6
PGSC0003DMG400002020 Solanum tuberosum HOM05D001988 ORTHO05D004985 1.6e-46 191.8 163 56.4
ATR0782G208 Amborella trichopoda HOM05D001988 ORTHO05D004985 4.7e-43 180.3 350 34.9
COL.COLO4_23013 Corchorus olitorius HOM05D001988 ORTHO05D004985 4.4e-41 173.7 608 28.5
Aqoxy5G02833 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 9.8e-41 172.6 224 40.2
Atru.chr11.1785 Acer truncatum HOM05D001988 ORTHO05D004985 8.3e-40 169.5 353 33.7
Aqoxy5G02832 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 2.9e-37 161.0 244 41.4
Atru.chr11.1786 Acer truncatum HOM05D001988 ORTHO05D004985 4.0e-34 150.6 141 50.4
AagrBONN_evm.TU.Sc2ySwM_362.1335 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.4e-31 140.2 554 24.0
Hund25529 Selenicereus undatus HOM05D001988 ORTHO05D004985 5.4e-31 140.2 252 32.9
Peaxi162Scf00342g00711 Petunia axillaris HOM05D001988 ORTHO05D004985 7.8e-30 136.3 401 30.4
Medtr4g071850 Medicago truncatula HOM05D001988 ORTHO05D004985 1.0e-26 125.9 192 42.7
SMO239G0039 Selaginella moellendorffii HOM05D001988 ORTHO05D004985 9.8e-25 119.4 147 40.8
CARHR212720 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.5e-20 105.5 256 33.6
AagrBONN_evm.TU.Sc2ySwM_117.2968 Anthoceros agrestis HOM05D001988 ORTHO05D004985 1.9e-20 105.1 199 30.2
Actinidia31897 Actinidia chinensis HOM05D001988 ORTHO05D004985 1.6e-19 102.1 223 34.5
Aqoxy5G02834 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 8.0e-19 99.8 98 51.0
CARHR145380 Cardamine hirsuta HOM05D001988 ORTHO05D004985 4.0e-18 97.4 197 35.5
AagrBONN_evm.TU.Sc2ySwM_369.75 Anthoceros agrestis HOM05D001988 ORTHO05D004985 1.4e-15 89.0 199 30.7
RcHm_v2.0_Chr7g0220011 Rosa chinensis HOM05D001988 ORTHO05D004985 5.0e-13 80.5 87 48.3
CDE06G2098 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 1.1e-12 79.3 302 23.2
RcHm_v2.0_Chr5g0048631 Rosa chinensis HOM05D001988 ORTHO05D004985 1.1e-12 79.3 87 47.1
AT1G42615 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 3.3e-12 77.8 148 37.2
AL7G47160 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 4.0e-10 70.9 67 47.8
EL10As5g23508 Beta vulgaris HOM05D001988 ORTHO05D004985 7.5e-09 66.6 55 54.5
Os05g0352700 Oryza sativa ssp. japonica HOM05D001988 ORTHO05D004985 2.9e-08 64.7 167 28.7
CARHR289080 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.4e-07 62.4 63 49.2
MCO03G550 Micromonas commoda HOM05D001988 ORTHO05D004985 9.2e-07 59.7 125 30.4
CBR_g30180 Chara braunii HOM05D001988 ORTHO05D004985 7.8e-06 56.6 62 37.1


User provided reference genes

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