Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G0894 Papaver somniferum HOM05D007027 ORTHO05D008765 2.7e-206 721.8 387 100.0
PSO170G1275 Papaver somniferum HOM05D007027 ORTHO05D008765 2.0e-201 705.7 387 97.2
Dinv07482 Davidia involucrata HOM05D007027 ORTHO05D008765 2.5e-127 459.5 330 68.5
MBI03_g18680_MAGBIO Magnolia biondii HOM05D007027 ORTHO05D008765 1.2e-126 457.2 347 65.7
CSS0028981 Camellia sinensis var. sinensis HOM05D007027 ORTHO05D008765 2.8e-126 456.1 331 67.7
GSVIVG01023249001 Vitis vinifera HOM05D007027 ORTHO05D008765 2.8e-126 456.1 330 69.4
TAR381G1092 Trochodendron aralioides HOM05D007027 ORTHO05D008765 1.0e-125 454.1 332 68.1
QL02p100436 Quercus lobata HOM05D007027 ORTHO05D008765 1.5e-124 450.3 328 69.8
Aqoxy3G00475 Aquilegia oxysepala HOM05D007027 ORTHO05D008765 7.5e-124 448.0 385 62.6
CiPaw.05G004800 Carya illinoinensis HOM05D007027 ORTHO05D008765 2.2e-123 446.4 327 69.1
Cfa004487 Carpinus fangiana HOM05D007027 ORTHO05D008765 5.4e-122 441.8 379 61.7
Manes.07G024000 Manihot esculenta HOM05D007027 ORTHO05D008765 5.4e-122 441.8 328 68.3
Duzib132G0056 Durio zibethinus HOM05D007027 ORTHO05D008765 2.7e-121 439.5 330 67.0
Gohir.D01G174800 Gossypium hirsutum HOM05D007027 ORTHO05D008765 3.5e-121 439.1 331 66.8
CiPaw.06G173600 Carya illinoinensis HOM05D007027 ORTHO05D008765 1.3e-120 437.2 323 68.1
Gorai.002G216900 Gossypium raimondii HOM05D007027 ORTHO05D008765 2.3e-120 436.4 331 66.8
THA.LOC104816809 Tarenaya hassleriana HOM05D007027 ORTHO05D008765 3.9e-120 435.6 332 66.3
Actinidia00176 Actinidia chinensis HOM05D007027 ORTHO05D008765 6.6e-120 434.9 322 68.0
Cpa.g.sc113.45 Carica papaya HOM05D007027 ORTHO05D008765 6.6e-120 434.9 330 67.0
Nn5g27423 Nelumbo nucifera HOM05D007027 ORTHO05D008765 1.1e-119 434.1 380 58.9
BcaC05g24848 Brassica carinata HOM05D007027 ORTHO05D008765 1.9e-119 433.3 335 64.5
Gohir.A01G183800 Gossypium hirsutum HOM05D007027 ORTHO05D008765 9.5e-119 431.0 331 65.9
MD08G1241400 Malus domestica HOM05D007027 ORTHO05D008765 1.2e-118 430.6 387 58.9
Sp1g08410 Schrenkiella parvula HOM05D007027 ORTHO05D008765 1.2e-118 430.6 324 66.0
CANSAT54G3047 Cannabis sativa HOM05D007027 ORTHO05D008765 1.6e-118 430.3 335 64.2
Thhalv10007981m.g Eutrema salsugineum HOM05D007027 ORTHO05D008765 1.6e-118 430.3 330 64.8
CAN.G855.3 Capsicum annuum HOM05D007027 ORTHO05D008765 2.1e-118 429.9 331 62.8
MD15G1435400 Malus domestica HOM05D007027 ORTHO05D008765 3.6e-118 429.1 387 58.9
PGSC0003DMG400024892 Solanum tuberosum HOM05D007027 ORTHO05D008765 3.6e-118 429.1 331 63.1
Glyma.12G167000 Glycine max HOM05D007027 ORTHO05D008765 8.0e-118 427.9 331 65.9
AT1G09800 Arabidopsis thaliana HOM05D007027 ORTHO05D008765 1.1e-117 427.6 327 64.2
CARHR009790 Cardamine hirsuta HOM05D007027 ORTHO05D008765 1.1e-117 427.6 327 65.4
Carub.0001s0916 Capsella rubella HOM05D007027 ORTHO05D008765 1.8e-117 426.8 327 65.4
FvH4_3g33250 Fragaria vesca HOM05D007027 ORTHO05D008765 1.8e-117 426.8 379 60.4
Ca_00043_v3 Cicer arietinum L. HOM05D007027 ORTHO05D008765 3.1e-117 426.0 330 64.8
Nitab4.5_0000787g0210 Nicotiana tabacum HOM05D007027 ORTHO05D008765 4.0e-117 425.6 329 64.1
A06p06480 Brassica napus HOM05D007027 ORTHO05D008765 8.9e-117 424.5 317 66.6
Nitab4.5_0004106g0030 Nicotiana tabacum HOM05D007027 ORTHO05D008765 8.9e-117 424.5 329 64.1
Migut.B00775 Erythranthe guttata HOM05D007027 ORTHO05D008765 1.2e-116 424.1 326 65.6
Solyc01g103560.3 Solanum lycopersicum HOM05D007027 ORTHO05D008765 1.5e-116 423.7 331 62.5
BolC5t29540H Brassica oleracea HOM05D007027 ORTHO05D008765 2.0e-116 423.3 320 65.9
FAN25G1584 Fragaria x ananassa HOM05D007027 ORTHO05D008765 2.0e-116 423.3 379 60.2
Lalb_Chr20g0123691 Lupinus albus HOM05D007027 ORTHO05D008765 2.0e-116 423.3 327 66.1
Sopen01g045910 Solanum pennellii HOM05D007027 ORTHO05D008765 4.4e-116 422.2 339 61.4
Cc02_g23170 Coffea canephora HOM05D007027 ORTHO05D008765 5.8e-116 421.8 328 64.3
BraA06t23859Z Brassica rapa HOM05D007027 ORTHO05D008765 9.8e-116 421.0 317 66.6
RcHm_v2.0_Chr5g0060601 Rosa chinensis HOM05D007027 ORTHO05D008765 1.3e-115 420.6 379 59.1
A09p65310 Brassica napus HOM05D007027 ORTHO05D008765 4.9e-115 418.7 328 63.4
SalBow7G1849 Salvia bowleyana HOM05D007027 ORTHO05D008765 6.4e-115 418.3 337 63.2
C08p49260 Brassica napus HOM05D007027 ORTHO05D008765 8.3e-115 417.9 328 63.1
TPR.G2122 Trifolium pratense HOM05D007027 ORTHO05D008765 8.3e-115 417.9 388 56.2
Medtr2g005830 Medicago truncatula HOM05D007027 ORTHO05D008765 1.1e-114 417.5 328 63.4
Rhsim11G0122600 Rhododendron simsii HOM05D007027 ORTHO05D008765 1.1e-114 417.5 349 62.5
VMungo0540G1081 Vigna mungo HOM05D007027 ORTHO05D008765 1.1e-114 417.5 331 63.4
FAN16G3401 Fragaria x ananassa HOM05D007027 ORTHO05D008765 1.4e-114 417.2 379 60.2
C05p07890 Brassica napus HOM05D007027 ORTHO05D008765 1.9e-114 416.8 316 65.8
BolC8t52461H Brassica oleracea HOM05D007027 ORTHO05D008765 1.9e-114 416.8 328 62.8
Atru.chr6.497 Acer truncatum HOM05D007027 ORTHO05D008765 2.4e-114 416.4 379 58.3
SGA_v2.0_scaffold304G47919 Striga asiatica HOM05D007027 ORTHO05D008765 3.2e-114 416.0 337 60.8
Glyma.16G003100 Glycine max HOM05D007027 ORTHO05D008765 4.1e-114 415.6 386 57.0
PGR142G1179 Punica granatum HOM05D007027 ORTHO05D008765 4.1e-114 415.6 330 64.2
Psat1g222360 Pisum sativum HOM05D007027 ORTHO05D008765 5.4e-114 415.2 333 62.5
CsaV3_5G029790 Cucumis sativus L. HOM05D007027 ORTHO05D008765 9.2e-114 414.5 334 62.3
HanXRQChr09g0249131 Helianthus annuus HOM05D007027 ORTHO05D008765 2.7e-113 412.9 333 63.4
Potri.003G008500 Populus trichocarpa HOM05D007027 ORTHO05D008765 6.0e-113 411.8 325 65.5
DCAR_006671 Daucus carota HOM05D007027 ORTHO05D008765 1.3e-112 410.6 387 54.8
Oeu064602.3 Olea europaea HOM05D007027 ORTHO05D008765 1.7e-112 410.2 368 58.2
AL1G20380 Arabidopsis lyrata HOM05D007027 ORTHO05D008765 2.3e-112 409.8 357 59.1
Os12g0194800 Oryza sativa ssp. japonica HOM05D007027 ORTHO05D008765 5.1e-112 408.7 326 62.9
FAN11G0675 Fragaria x ananassa HOM05D007027 ORTHO05D008765 8.6e-112 407.9 415 55.2
Lj5C266T4 Lonicera japonica HOM05D007027 ORTHO05D008765 2.5e-111 406.4 331 62.8
Zm00001eb138750 Zea mays HOM05D007027 ORTHO05D008765 3.3e-111 406.0 331 61.6
EL10Ac6g14111 Beta vulgaris HOM05D007027 ORTHO05D008765 7.3e-111 404.8 324 65.1
Sabra03G0004200 Salix brachista HOM05D007027 ORTHO05D008765 7.3e-111 404.8 405 55.1
MELO3C011820.2 Cucumis melo HOM05D007027 ORTHO05D008765 9.5e-111 404.4 351 59.8
Haze_10044 Corylus avellana HOM05D007027 ORTHO05D008765 2.8e-110 402.9 476 50.6
COL.COLO4_17723 Corchorus olitorius HOM05D007027 ORTHO05D008765 3.6e-110 402.5 329 64.1
ECA233G3768 Erigeron canadensis HOM05D007027 ORTHO05D008765 3.6e-110 402.5 325 62.8
arahy.Tifrunner.gnm1.ann1.BAUB6M Arachis hypogaea HOM05D007027 ORTHO05D008765 8.1e-110 401.4 328 62.8
arahy.Tifrunner.gnm1.ann1.3G44QY Arachis hypogaea HOM05D007027 ORTHO05D008765 4.0e-109 399.1 328 62.5
Ciclev10001491m.g Citrus clementina HOM05D007027 ORTHO05D008765 2.0e-108 396.7 331 63.4
Hund15459 Selenicereus undatus HOM05D007027 ORTHO05D008765 4.4e-108 395.6 335 62.7
ATR1136G089 Amborella trichopoda HOM05D007027 ORTHO05D008765 2.9e-107 392.9 326 62.6
Thecc.02G018500 Theobroma cacao HOM05D007027 ORTHO05D008765 6.4e-107 391.7 329 62.0
Prupe.1G579000 Prunus persica HOM05D007027 ORTHO05D008765 4.1e-106 389.0 385 58.2
BcaC07g41859 Brassica carinata HOM05D007027 ORTHO05D008765 9.2e-106 387.9 331 60.4
Lj6g0019688 Lotus japonicus HOM05D007027 ORTHO05D008765 1.2e-105 387.5 329 59.9
Lj6g0023928 Lotus japonicus HOM05D007027 ORTHO05D008765 1.2e-105 387.5 329 59.9
TWI23G0132 Tripterygium wilfordii HOM05D007027 ORTHO05D008765 3.5e-105 386.0 381 55.6
FAN21G1550 Fragaria x ananassa HOM05D007027 ORTHO05D008765 1.1e-101 374.4 379 55.1
vmacro01711 Vaccinium macrocarpon HOM05D007027 ORTHO05D008765 1.1e-101 374.4 421 51.3
unitig_699.g19848 Utricularia gibba HOM05D007027 ORTHO05D008765 1.4e-101 374.0 328 59.1
Eucgr.I02764 Eucalyptus grandis HOM05D007027 ORTHO05D008765 3.9e-96 355.9 278 62.9
AUR62043952 Chenopodium quinoa HOM05D007027 ORTHO05D008765 9.6e-95 351.3 322 57.1
Pp3c1_13020 Physcomitrium patens HOM05D007027 ORTHO05D008765 4.0e-93 345.9 322 54.3
Mapoly0016s0042 Marchantia polymorpha HOM05D007027 ORTHO05D008765 2.3e-88 330.1 327 54.1
Sed0027668 Sechium edule HOM05D007027 ORTHO05D008765 8.1e-86 321.6 333 53.8
HPP92_013442 Vanilla planifolia HOM05D007027 ORTHO05D008765 1.3e-83 314.3 271 60.9
Phvul.006G218900 Phaseolus vulgaris HOM05D007027 ORTHO05D008765 3.2e-82 309.7 219 65.3
SMO118G0354 Selaginella moellendorffii HOM05D007027 ORTHO05D008765 4.3e-79 299.3 324 49.4
ClCG11G013270 Citrullus lanatus HOM05D007027 ORTHO05D008765 4.9e-75 285.8 335 49.6
Sc07g0005100 Simmondsia chinensis HOM05D007027 ORTHO05D008765 3.2e-74 283.1 277 54.2
CBR_g30061 Chara braunii HOM05D007027 ORTHO05D008765 1.5e-68 264.2 452 38.1
HPP92_013441 Vanilla planifolia HOM05D007027 ORTHO05D008765 7.6e-68 261.9 189 65.1
Aa31LG1G5150 Aethionema arabicum HOM05D007027 ORTHO05D008765 1.9e-63 247.3 167 68.3
CDE05G2927 Ceratophyllum demersum HOM05D007027 ORTHO05D008765 9.4e-58 228.4 192 59.4
AUR62028254 Chenopodium quinoa HOM05D007027 ORTHO05D008765 1.5e-55 221.1 197 59.4
MCO02G420 Micromonas commoda HOM05D007027 ORTHO05D008765 2.0e-55 220.7 379 39.3
Lsat_1_v5_gn_9_120240 Lactuca sativa HOM05D007027 ORTHO05D008765 1.1e-45 188.3 131 68.7
Peaxi162Scf00011g01224 Petunia axillaris HOM05D007027 ORTHO05D008765 2.4e-45 187.2 234 47.9
Migut.B00774 Erythranthe guttata HOM05D007027 ORTHO05D008765 1.5e-34 151.4 97 71.1
CDE05G0566 Ceratophyllum demersum HOM05D007027 ORTHO05D008765 7.2e-34 149.1 141 56.0
RcHm_v2.0_Chr3g0481081 Rosa chinensis HOM05D007027 ORTHO05D008765 1.1e-26 125.2 76 78.9
Mapoly0209s0002 Marchantia polymorpha HOM05D006708 ORTHO05D008321 2.3e-16 90.9 325 25.5
AagrBONN_evm.TU.Sc2ySwM_228.1603 Anthoceros agrestis HOM05D006708 ORTHO05D008321 9.8e-15 85.5 327 25.7
SMO361G0559 Selaginella moellendorffii HOM05D006708 ORTHO05D008321 2.2e-14 84.3 214 28.0
Pp3c21_5420 Physcomitrium patens HOM05D006708 ORTHO05D008321 8.3e-14 82.4 212 26.4
HanXRQChr10g0293331 Helianthus annuus HOM05D006708 ORTHO05D008321 1.2e-12 78.6 202 29.2
Cre09.g405150 Chlamydomonas reinhardtii HOM05D006708 ORTHO05D008321 1.6e-12 78.2 337 25.2
PGSC0003DMG400027203 Solanum tuberosum HOM05D006708 ORTHO05D008321 2.0e-12 77.8 198 28.8
SalBow2G2621 Salvia bowleyana HOM05D006708 ORTHO05D008321 4.5e-12 76.6 198 27.3
TPR.G12542 Trifolium pratense HOM05D006708 ORTHO05D008321 4.5e-12 76.6 211 27.0
CAN.G305.34 Capsicum annuum HOM05D006708 ORTHO05D008321 5.9e-12 76.3 210 28.6
CBR_g55386 Chara braunii HOM05D006708 ORTHO05D008321 7.8e-12 75.9 211 28.9
Solyc05g053190.3 Solanum lycopersicum HOM05D006708 ORTHO05D008321 1.0e-11 75.5 198 28.8
Medtr4g123970 Medicago truncatula HOM05D006708 ORTHO05D008321 2.9e-11 73.9 201 27.4
Sopen05g031700 Solanum pennellii HOM05D006708 ORTHO05D008321 2.9e-11 73.9 195 28.7
Ca_21374_v3 Cicer arietinum L. HOM05D006708 ORTHO05D008321 3.9e-11 73.6 208 26.4
VMungo1215G1693 Vigna mungo HOM05D006708 ORTHO05D008321 1.5e-10 71.6 201 25.9
Cre13.g591501 Chlamydomonas reinhardtii HOM05D006708 ORTHO05D008321 1.9e-10 71.2 198 27.8
Glyma.17G041000 Glycine max HOM05D006708 ORTHO05D008321 2.5e-10 70.9 201 27.4
Lj4g0015836 Lotus japonicus HOM05D006708 ORTHO05D008321 2.5e-10 70.9 201 26.4
CANSAT64G0974 Cannabis sativa HOM05D006708 ORTHO05D008321 3.3e-10 70.5 198 26.3
arahy.Tifrunner.gnm1.ann1.H7T0W5 Arachis hypogaea HOM05D006708 ORTHO05D008321 4.3e-10 70.1 198 26.3
arahy.Tifrunner.gnm1.ann1.YU479Z Arachis hypogaea HOM05D006708 ORTHO05D008321 4.3e-10 70.1 198 26.3
MSTRG.24854 Avicennia marina HOM05D006708 ORTHO05D008321 4.3e-10 70.1 203 26.1
Phvul.003G122200 Phaseolus vulgaris HOM05D006708 ORTHO05D008321 4.3e-10 70.1 201 25.9
Psat4g021160 Pisum sativum HOM05D006708 ORTHO05D008321 4.3e-10 70.1 209 25.4
Hma1.2p1_0013F.1_g007850 Hydrangea macrophylla HOM05D006708 ORTHO05D008321 7.3e-10 69.3 199 25.6
PRCOL_00002295 Prasinoderma coloniale HOM05D006708 ORTHO05D008321 7.3e-10 69.3 174 29.9
HPP92_001944 Vanilla planifolia HOM05D006708 ORTHO05D008321 9.5e-10 68.9 210 25.2
FAN12G1816 Fragaria x ananassa HOM05D006708 ORTHO05D008321 1.6e-09 68.2 177 27.7
Eucgr.B03960 Eucalyptus grandis HOM05D006708 ORTHO05D008321 3.6e-09 67.0 198 25.3
SEGI_30443 Sequoiadendron giganteum HOM05D007027 ORTHO05D008765 3.4e-07 60.5 50 58.0
SEGI_32206 Sequoiadendron giganteum HOM05D006708 ORTHO05D008321 3.7e-06 57.0 74 36.5
Zm00001eb018490 Zea mays HOM05D005655 ORTHO05D007386 4.9e-06 56.6 190 27.4


User provided reference genes

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