Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO013G0112 Papaver somniferum HOM05D005334 ORTHO05D006560 3.4e-189 664.8 338 100.0
PSO700G0130 Papaver somniferum HOM05D005334 ORTHO05D006560 1.3e-172 609.8 317 96.5
PSO832G1169 Papaver somniferum HOM05D005334 ORTHO05D006560 7.2e-171 604.0 317 97.2
PSO761G0425 Papaver somniferum HOM05D005334 ORTHO05D006560 4.3e-168 594.7 318 94.7
Hma1.2p1_0964F.1_g242010 Hydrangea macrophylla HOM05D005334 ORTHO05D006560 8.3e-135 484.2 322 76.1
Thecc.10G018300 Theobroma cacao HOM05D005334 ORTHO05D006560 2.4e-134 482.6 320 77.5
TAR625G0036 Trochodendron aralioides HOM05D005334 ORTHO05D006560 1.6e-133 479.9 302 79.1
Cfa006855 Carpinus fangiana HOM05D005334 ORTHO05D006560 3.5e-133 478.8 320 75.9
Nn5g29815 Nelumbo nucifera HOM05D005334 ORTHO05D006560 1.0e-132 477.2 320 75.6
GSVIVG01003946001 Vitis vinifera HOM05D005334 ORTHO05D006560 1.3e-132 476.9 321 76.0
Rhsim04G0113300 Rhododendron simsii HOM05D005334 ORTHO05D006560 1.5e-131 473.4 320 75.3
Gohir.D12G076300 Gossypium hirsutum HOM05D005334 ORTHO05D006560 3.2e-131 472.2 318 75.5
Actinidia05483 Actinidia chinensis HOM05D005334 ORTHO05D006560 7.2e-131 471.1 320 74.7
Haze_03908 Corylus avellana HOM05D005334 ORTHO05D006560 2.1e-130 469.5 313 76.0
MD01G1042400 Malus domestica HOM05D005334 ORTHO05D006560 4.7e-130 468.4 318 74.5
QL06p036434 Quercus lobata HOM05D005334 ORTHO05D006560 4.7e-130 468.4 319 73.7
Duzib128G0185 Durio zibethinus HOM05D005334 ORTHO05D006560 1.4e-129 466.8 329 74.2
Gorai.008G084700 Gossypium raimondii HOM05D005334 ORTHO05D006560 1.8e-129 466.5 318 75.2
CANSAT01G0836 Cannabis sativa HOM05D005334 ORTHO05D006560 2.3e-129 466.1 320 74.7
Potri.010G189500 Populus trichocarpa HOM05D005334 ORTHO05D006560 3.0e-129 465.7 320 73.1
RcHm_v2.0_Chr6g0270401 Rosa chinensis HOM05D005334 ORTHO05D006560 5.2e-129 464.9 319 74.6
vmacro09003 Vaccinium macrocarpon HOM05D005334 ORTHO05D006560 5.2e-129 464.9 320 74.4
RcHm_v2.0_Chr6g0270301 Rosa chinensis HOM05D005334 ORTHO05D006560 8.8e-129 464.2 319 74.6
Ciclev10008278m.g Citrus clementina HOM05D005334 ORTHO05D006560 1.5e-128 463.4 320 73.8
FAN26G1496 Fragaria x ananassa HOM05D005334 ORTHO05D006560 2.0e-128 463.0 319 74.3
CsaV3_6G044840 Cucumis sativus L. HOM05D005334 ORTHO05D006560 2.6e-128 462.6 319 73.4
FvH4_1g19290 Fragaria vesca HOM05D005334 ORTHO05D006560 3.4e-128 462.2 319 75.2
ClCG01G018260 Citrullus lanatus HOM05D005334 ORTHO05D006560 4.4e-128 461.8 318 73.3
Eucgr.A00094 Eucalyptus grandis HOM05D005334 ORTHO05D006560 9.8e-128 460.7 320 73.1
MELO3C007703.2 Cucumis melo HOM05D005334 ORTHO05D006560 1.3e-127 460.3 323 73.1
COL.COLO4_25710 Corchorus olitorius HOM05D005334 ORTHO05D006560 2.2e-127 459.5 308 75.6
Prupe.1G076500 Prunus persica HOM05D005334 ORTHO05D006560 2.8e-127 459.1 319 73.0
Ciclev10008715m.g Citrus clementina HOM05D005334 ORTHO05D006560 1.1e-126 457.2 320 73.1
TWI34G1275 Tripterygium wilfordii HOM05D005334 ORTHO05D006560 1.4e-126 456.8 318 73.0
Aqoxy6G01573 Aquilegia oxysepala HOM05D005334 ORTHO05D006560 3.1e-126 455.7 320 73.8
Sed0026061 Sechium edule HOM05D005334 ORTHO05D006560 3.1e-126 455.7 320 72.8
FvH4_7g07230 Fragaria vesca HOM05D005334 ORTHO05D006560 5.4e-126 454.9 319 72.7
FAN23G0357 Fragaria x ananassa HOM05D005334 ORTHO05D006560 2.0e-125 453.0 319 73.4
FAN23G0783 Fragaria x ananassa HOM05D005334 ORTHO05D006560 2.0e-125 453.0 319 73.4
Sabra10G0146100 Salix brachista HOM05D005334 ORTHO05D006560 1.0e-124 450.7 341 68.3
CiPaw.07G045200 Carya illinoinensis HOM05D005334 ORTHO05D006560 2.3e-124 449.5 321 71.7
Peaxi162Scf00085g00115 Petunia axillaris HOM05D005334 ORTHO05D006560 2.9e-124 449.1 318 70.1
Manes.10G013400 Manihot esculenta HOM05D005334 ORTHO05D006560 1.9e-123 446.4 320 71.6
CAN.G1813.2 Capsicum annuum HOM05D005334 ORTHO05D006560 2.5e-123 446.0 318 70.1
Lj3g0001207 Lotus japonicus HOM05D005334 ORTHO05D006560 3.3e-123 445.7 320 71.2
Solyc11g010950.2 Solanum lycopersicum HOM05D005334 ORTHO05D006560 4.3e-123 445.3 317 69.1
CiPaw.07G045000 Carya illinoinensis HOM05D005334 ORTHO05D006560 7.3e-123 444.5 321 71.7
Ca_14799_v3 Cicer arietinum L. HOM05D005334 ORTHO05D006560 7.3e-123 444.5 321 70.4
Sopen11g005690 Solanum pennellii HOM05D005334 ORTHO05D006560 1.6e-122 443.4 318 69.2
arahy.Tifrunner.gnm1.ann1.DY9T0P Arachis hypogaea HOM05D005334 ORTHO05D006560 2.1e-122 443.0 320 71.9
ECA233G4415 Erigeron canadensis HOM05D005334 ORTHO05D006560 3.6e-122 442.2 320 70.6
PGSC0003DMG400016186 Solanum tuberosum HOM05D005334 ORTHO05D006560 3.6e-122 442.2 318 68.9
arahy.Tifrunner.gnm1.ann1.D5QNLH Arachis hypogaea HOM05D005334 ORTHO05D006560 4.7e-122 441.8 320 71.9
Lalb_Chr12g0210501 Lupinus albus HOM05D005334 ORTHO05D006560 4.7e-122 441.8 320 71.6
Medtr8g007340 Medicago truncatula HOM05D005334 ORTHO05D006560 8.0e-122 441.0 320 69.7
Nitab4.5_0000402g0140 Nicotiana tabacum HOM05D005334 ORTHO05D006560 1.8e-121 439.9 318 68.2
SalBow5G4670 Salvia bowleyana HOM05D005334 ORTHO05D006560 4.0e-121 438.7 312 70.5
SalBow5G3116 Salvia bowleyana HOM05D005334 ORTHO05D006560 5.2e-121 438.3 312 70.5
SGA_v2.0_scaffold45G17221 Striga asiatica HOM05D005334 ORTHO05D006560 1.2e-120 437.2 318 69.2
Psat4g223080 Pisum sativum HOM05D005334 ORTHO05D006560 1.5e-120 436.8 321 69.5
Sc03g0000510 Simmondsia chinensis HOM05D005334 ORTHO05D006560 2.6e-120 436.0 319 69.9
MSTRG.3723 Avicennia marina HOM05D005334 ORTHO05D006560 3.4e-120 435.6 318 68.9
Phvul.010G046100 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 1.3e-119 433.7 320 69.1
Glyma.13G008300 Glycine max HOM05D005334 ORTHO05D006560 8.3e-119 431.0 320 69.1
Phvul.010G045900 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 8.3e-119 431.0 320 69.1
CSS0002721 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 1.4e-118 430.3 293 73.4
Os06g0639600 Oryza sativa ssp. japonica HOM05D005334 ORTHO05D006560 2.4e-118 429.5 327 67.0
Cc07_g13790 Coffea canephora HOM05D005334 ORTHO05D006560 1.6e-117 426.8 319 68.3
MBI10_g34777_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 1.6e-117 426.8 340 66.2
VMungo0331G1245 Vigna mungo HOM05D005334 ORTHO05D006560 5.9e-117 424.9 320 67.5
HanXRQChr08g0226671 Helianthus annuus HOM05D005334 ORTHO05D006560 1.0e-116 424.1 319 68.3
PGR031G2068 Punica granatum HOM05D005334 ORTHO05D006560 2.3e-116 422.9 324 66.0
Atru.chr12.1050 Acer truncatum HOM05D005334 ORTHO05D006560 1.9e-115 419.9 334 67.4
FAN19G2596 Fragaria x ananassa HOM05D005334 ORTHO05D006560 2.6e-112 409.5 319 69.6
CDE04G2384 Ceratophyllum demersum HOM05D005334 ORTHO05D006560 5.8e-112 408.3 321 64.8
Zm00001eb387250 Zea mays HOM05D005334 ORTHO05D006560 7.0e-110 401.4 328 63.7
Carub.0003s1053 Capsella rubella HOM05D005334 ORTHO05D006560 4.6e-109 398.7 317 65.0
AUR62003692 Chenopodium quinoa HOM05D005334 ORTHO05D006560 4.6e-109 398.7 327 63.9
CARHR085780 Cardamine hirsuta HOM05D005334 ORTHO05D006560 5.0e-108 395.2 317 65.3
Migut.K00814 Erythranthe guttata HOM05D005334 ORTHO05D006560 5.0e-108 395.2 319 65.5
AUR62018003 Chenopodium quinoa HOM05D005334 ORTHO05D006560 1.5e-107 393.7 349 59.9
Thhalv10021017m.g Eutrema salsugineum HOM05D005334 ORTHO05D006560 1.5e-107 393.7 317 64.7
CiPaw.07G049700 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.9e-107 393.3 318 65.7
Lj2C525G9 Lonicera japonica HOM05D005334 ORTHO05D006560 2.5e-107 392.9 321 65.4
Cpa.g.sc19.179 Carica papaya HOM05D005334 ORTHO05D006560 6.2e-106 388.3 320 65.9
AT3G11220 Arabidopsis thaliana HOM05D005334 ORTHO05D006560 8.1e-106 387.9 317 64.4
Sp3g09500 Schrenkiella parvula HOM05D005334 ORTHO05D006560 8.1e-106 387.9 317 64.0
THA.LOC104816551 Tarenaya hassleriana HOM05D005334 ORTHO05D006560 8.1e-106 387.9 317 63.4
BcaC05g29390 Brassica carinata HOM05D005334 ORTHO05D006560 1.4e-105 387.1 317 64.4
Aa31LG3G4530 Aethionema arabicum HOM05D005334 ORTHO05D006560 4.0e-105 385.6 317 64.0
A05p38080 Brassica napus HOM05D005334 ORTHO05D006560 1.5e-104 383.6 318 64.2
C05p56870 Brassica napus HOM05D005334 ORTHO05D006560 3.4e-104 382.5 318 64.2
AL3G22740 Arabidopsis lyrata HOM05D005334 ORTHO05D006560 9.8e-104 380.9 324 63.6
BraA05t22600Z Brassica rapa HOM05D005334 ORTHO05D006560 1.3e-103 380.6 318 63.5
CiPaw.07G044700 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.1e-102 377.5 323 62.8
BolC5t34351H Brassica oleracea HOM05D005334 ORTHO05D006560 1.2e-101 374.0 343 59.5
unitig_0.g2648 Utricularia gibba HOM05D005334 ORTHO05D006560 5.1e-100 368.6 331 58.9
ATR1153G009 Amborella trichopoda HOM05D005334 ORTHO05D006560 8.6e-100 367.9 309 60.5
SEGI_17743 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 3.3e-99 365.9 345 54.5
Lsat_1_v5_gn_6_15620 Lactuca sativa HOM05D005334 ORTHO05D006560 2.8e-98 362.8 314 62.7
SHI03443 Sapria himalayana HOM05D005334 ORTHO05D006560 2.6e-96 356.3 314 60.5
FAN03G2380 Fragaria x ananassa HOM05D005334 ORTHO05D006560 6.0e-93 345.1 311 62.7
Gohir.A12G078265 Gossypium hirsutum HOM05D005334 ORTHO05D006560 6.0e-93 345.1 243 73.7
Dinv36960 Davidia involucrata HOM05D005334 ORTHO05D006560 1.7e-92 343.6 233 73.4
Glyma.03G108600 Glycine max HOM05D005334 ORTHO05D006560 6.6e-92 341.7 258 67.1
Ah.02g123390 Amaranthus hybridus HOM05D005334 ORTHO05D006560 1.2e-90 337.4 319 58.3
Hund14075 Selenicereus undatus HOM05D005334 ORTHO05D006560 1.1e-86 324.3 319 56.4
Mapoly0006s0234 Marchantia polymorpha HOM05D005334 ORTHO05D006560 1.3e-82 310.8 345 47.5
Pp3c9_23940 Physcomitrium patens HOM05D005334 ORTHO05D006560 4.9e-79 298.9 341 47.2
AagrBONN_evm.TU.Sc2ySwM_117.1770 Anthoceros agrestis HOM05D005334 ORTHO05D006560 2.7e-77 293.1 373 46.1
Dinv27014 Davidia involucrata HOM05D005334 ORTHO05D006560 1.5e-75 287.3 216 69.9
Thecc.09G278800 Theobroma cacao HOM05D005334 ORTHO05D006560 9.6e-67 258.1 187 70.6
Lj2g0000099 Lotus japonicus HOM05D005334 ORTHO05D006560 3.4e-64 249.6 167 76.0
TPR.G5292 Trifolium pratense HOM05D005334 ORTHO05D006560 5.8e-64 248.8 173 72.8
Prupe.6G206700 Prunus persica HOM05D005334 ORTHO05D006560 3.5e-61 239.6 309 48.9
DCAR_003438 Daucus carota HOM05D005334 ORTHO05D006560 4.5e-56 222.6 261 49.0
BcaB06g25638 Brassica carinata HOM05D005334 ORTHO05D006560 5.0e-55 219.2 192 64.1
Lsat_1_v5_gn_4_105120 Lactuca sativa HOM05D005334 ORTHO05D006560 1.1e-51 208.0 166 63.9
CSS0046374 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 7.7e-48 195.3 123 80.5
CSS0016906 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 1.9e-46 190.7 123 78.9
TPR.G11130 Trifolium pratense HOM05D005334 ORTHO05D006560 1.0e-44 184.9 152 59.2
SMO146G0066 Selaginella moellendorffii HOM05D005334 ORTHO05D006560 1.8e-44 184.1 249 44.2
Lj6g0009802 Lotus japonicus HOM05D005334 ORTHO05D006560 3.0e-44 183.3 154 61.0
RcHm_v2.0_Chr2g0110581 Rosa chinensis HOM05D005334 ORTHO05D006560 2.6e-43 180.3 117 76.1
ATR0022G031 Amborella trichopoda HOM05D005334 ORTHO05D006560 5.3e-41 172.6 146 63.0
MD01G1042700 Malus domestica HOM05D005334 ORTHO05D006560 2.0e-40 170.6 165 58.2
Lsat_1_v5_gn_8_12861 Lactuca sativa HOM05D005334 ORTHO05D006560 5.0e-39 166.0 116 72.4
CSS0017464 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 1.8e-36 157.5 123 69.1
SEGI_40300 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 1.1e-35 154.8 176 46.6
CiPaw.07G044400 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.1e-33 148.3 98 72.4
Lsat_1_v5_gn_1_79261 Lactuca sativa HOM05D005334 ORTHO05D006560 1.2e-32 144.8 101 71.3
Lsat_1_v5_gn_5_29040 Lactuca sativa HOM05D005334 ORTHO05D006560 5.0e-31 139.4 119 58.0
HPP92_008022 Vanilla planifolia HOM05D005334 ORTHO05D006560 9.4e-30 135.2 114 61.4
MBI03_g45376_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 1.4e-28 131.3 87 74.7
Lsat_1_v5_gn_4_67481 Lactuca sativa HOM05D005334 ORTHO05D006560 4.0e-28 129.8 89 73.0
CSS0026696 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 4.8e-26 122.9 72 81.9
HPP92_008021 Vanilla planifolia HOM05D005334 ORTHO05D006560 1.7e-23 114.4 79 73.4
MBI03_g46739_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 8.5e-23 112.1 77 68.8
CBR_g30786 Chara braunii HOM05D000019 ORTHO05D000002 1.8e-17 94.4 134 39.6
Cre03.g196000 Chlamydomonas reinhardtii HOM05D005334 ORTHO05D006560 6.5e-15 85.9 365 21.4


User provided reference genes

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