Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00003742 Prasinoderma coloniale HOM05D003576 ORTHO05D004124 1.5e-186 656.0 327 100.0
CBR_g38931 Chara braunii HOM05D003576 ORTHO05D004124 1.8e-57 227.3 227 48.9
AagrBONN_evm.TU.Sc2ySwM_228.4941 Anthoceros agrestis HOM05D003576 ORTHO05D004124 8.7e-57 224.9 218 52.8
PSO384G2156 Papaver somniferum HOM05D003576 ORTHO05D004124 6.3e-55 218.8 202 54.0
TAR633G2490 Trochodendron aralioides HOM05D003576 ORTHO05D004124 1.1e-54 218.0 221 49.8
PSO339G2752 Papaver somniferum HOM05D003576 ORTHO05D004124 1.8e-54 217.2 202 54.0
Mapoly0154s0022 Marchantia polymorpha HOM05D003576 ORTHO05D004124 5.3e-54 215.7 206 51.0
Nn2g13102 Nelumbo nucifera HOM05D003576 ORTHO05D004124 6.9e-54 215.3 202 51.5
PSO063G6153 Papaver somniferum HOM05D003576 ORTHO05D004124 1.5e-53 214.2 202 51.5
SMO356G0089 Selaginella moellendorffii HOM05D003576 ORTHO05D004124 2.6e-53 213.4 203 51.2
CDE04G0074 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 3.4e-53 213.0 202 52.0
Pp3c10_5620 Physcomitrium patens HOM05D003576 ORTHO05D004124 1.7e-52 210.7 204 49.5
PSO339G5183 Papaver somniferum HOM05D003576 ORTHO05D004124 3.8e-52 209.5 195 52.3
Pp3c1_22690 Physcomitrium patens HOM05D003576 ORTHO05D004124 5.0e-52 209.1 204 49.0
Aqoxy1G02388 Aquilegia oxysepala HOM05D003576 ORTHO05D004124 6.5e-52 208.8 202 51.0
MD01G1108400 Malus domestica HOM05D003576 ORTHO05D004124 3.2e-51 206.5 242 45.9
MD07G1174600 Malus domestica HOM05D003576 ORTHO05D004124 3.2e-51 206.5 254 44.9
Thecc.10G074000 Theobroma cacao HOM05D003576 ORTHO05D004124 4.2e-51 206.1 202 51.0
Zm00001eb273430 Zea mays HOM05D003576 ORTHO05D004124 2.7e-50 203.4 202 49.5
AUR62018250 Chenopodium quinoa HOM05D003576 ORTHO05D004124 1.0e-49 201.4 202 50.0
Gohir.A10G205700 Gossypium hirsutum HOM05D003576 ORTHO05D004124 2.3e-49 200.3 202 49.5
Gohir.D10G214000 Gossypium hirsutum HOM05D003576 ORTHO05D004124 2.3e-49 200.3 202 49.5
Gorai.011G239400 Gossypium raimondii HOM05D003576 ORTHO05D004124 2.3e-49 200.3 202 49.5
Prupe.2G213500 Prunus persica HOM05D003576 ORTHO05D004124 2.3e-49 200.3 212 49.1
FvH4_2g18840 Fragaria vesca HOM05D003576 ORTHO05D004124 3.0e-49 199.9 202 50.5
RcHm_v2.0_Chr6g0284661 Rosa chinensis HOM05D003576 ORTHO05D004124 3.0e-49 199.9 202 49.5
Lalb_Chr03g0035911 Lupinus albus HOM05D003576 ORTHO05D004124 6.7e-49 198.7 202 49.5
GSVIVG01016273001 Vitis vinifera HOM05D003576 ORTHO05D004124 8.8e-49 198.4 202 50.0
Actinidia38283 Actinidia chinensis HOM05D003576 ORTHO05D004124 1.5e-48 197.6 256 42.2
ATR0048G008 Amborella trichopoda HOM05D003576 ORTHO05D004124 2.0e-48 197.2 201 51.7
EL10Ac2g03301 Beta vulgaris HOM05D003576 ORTHO05D004124 2.0e-48 197.2 202 48.0
DCAR_019104 Daucus carota HOM05D003576 ORTHO05D004124 2.0e-48 197.2 202 49.5
Eucgr.J01085 Eucalyptus grandis HOM05D003576 ORTHO05D004124 2.0e-48 197.2 202 49.5
Lj3A882G53 Lonicera japonica HOM05D003576 ORTHO05D004124 2.0e-48 197.2 202 48.5
Nitab4.5_0009985g0010 Nicotiana tabacum HOM05D003576 ORTHO05D004124 2.0e-48 197.2 202 50.5
Pp3c2_16830 Physcomitrium patens HOM05D003576 ORTHO05D004124 2.0e-48 197.2 204 45.6
Rhsim03G0120500 Rhododendron simsii HOM05D003576 ORTHO05D004124 2.0e-48 197.2 202 49.0
vmacro07071 Vaccinium macrocarpon HOM05D003576 ORTHO05D004124 2.0e-48 197.2 202 49.0
arahy.Tifrunner.gnm1.ann1.33B581 Arachis hypogaea HOM05D003576 ORTHO05D004124 2.5e-48 196.8 202 49.0
arahy.Tifrunner.gnm1.ann1.THE0XD Arachis hypogaea HOM05D003576 ORTHO05D004124 2.5e-48 196.8 202 49.0
Os02g0805900 Oryza sativa ssp. japonica HOM05D003576 ORTHO05D004124 2.5e-48 196.8 202 49.5
Nitab4.5_0000476g0030 Nicotiana tabacum HOM05D003576 ORTHO05D004124 3.3e-48 196.4 202 50.0
Phvul.004G083500 Phaseolus vulgaris HOM05D003576 ORTHO05D004124 3.3e-48 196.4 202 49.0
Cc02_g11340 Coffea canephora HOM05D003576 ORTHO05D004124 4.3e-48 196.1 202 48.0
CANSAT56G0320 Cannabis sativa HOM05D003576 ORTHO05D004124 5.7e-48 195.7 202 49.0
ClCG08G007510 Citrullus lanatus HOM05D003576 ORTHO05D004124 5.7e-48 195.7 202 48.5
Solyc05g056110.3 Solanum lycopersicum HOM05D003576 ORTHO05D004124 7.4e-48 195.3 202 49.5
Sopen05g034520 Solanum pennellii HOM05D003576 ORTHO05D004124 7.4e-48 195.3 202 49.5
HPP92_020748 Vanilla planifolia HOM05D003576 ORTHO05D004124 7.4e-48 195.3 202 48.0
Glyma.02G074100 Glycine max HOM05D003576 ORTHO05D004124 9.7e-48 194.9 202 48.5
Hma1.2p1_0382F.1_g140100 Hydrangea macrophylla HOM05D003576 ORTHO05D004124 9.7e-48 194.9 251 43.8
PGR142G1591 Punica granatum HOM05D003576 ORTHO05D004124 9.7e-48 194.9 202 48.0
Sc20g0001840 Simmondsia chinensis HOM05D003576 ORTHO05D004124 9.7e-48 194.9 202 48.5
Cfa021515 Carpinus fangiana HOM05D003576 ORTHO05D004124 1.3e-47 194.5 202 48.5
Lsat_1_v5_gn_9_69180 Lactuca sativa HOM05D003576 ORTHO05D004124 1.3e-47 194.5 202 49.5
Lalb_Chr01g0010001 Lupinus albus HOM05D003576 ORTHO05D004124 1.3e-47 194.5 202 47.5
CAN.G694.86 Capsicum annuum HOM05D003576 ORTHO05D004124 1.7e-47 194.1 202 48.0
CsaV3_6G036430 Cucumis sativus L. HOM05D003576 ORTHO05D004124 1.7e-47 194.1 202 48.0
Lj2g0011631 Lotus japonicus HOM05D003576 ORTHO05D004124 1.7e-47 194.1 202 48.5
Sed0006763 Sechium edule HOM05D003576 ORTHO05D004124 1.7e-47 194.1 202 48.5
Manes.07G100300 Manihot esculenta HOM05D003576 ORTHO05D004124 2.2e-47 193.7 202 48.0
Glyma.16G155600 Glycine max HOM05D003576 ORTHO05D004124 2.8e-47 193.4 202 48.0
Dinv31323 Davidia involucrata HOM05D003576 ORTHO05D004124 3.7e-47 193.0 202 49.0
ECA232G3526 Erigeron canadensis HOM05D003576 ORTHO05D004124 3.7e-47 193.0 202 49.0
ECA238G1405 Erigeron canadensis HOM05D003576 ORTHO05D004124 3.7e-47 193.0 202 50.0
Migut.F01985 Erythranthe guttata HOM05D003576 ORTHO05D004124 3.7e-47 193.0 202 48.5
Sabra10G0172200 Salix brachista HOM05D003576 ORTHO05D004124 4.8e-47 192.6 202 47.5
Sed0008938 Sechium edule HOM05D003576 ORTHO05D004124 4.8e-47 192.6 202 49.5
ClCG05G021030 Citrullus lanatus HOM05D003576 ORTHO05D004124 6.3e-47 192.2 212 49.1
Atru.chr12.756 Acer truncatum HOM05D003576 ORTHO05D004124 8.2e-47 191.8 202 48.5
Atru.chr12.780 Acer truncatum HOM05D003576 ORTHO05D004124 8.2e-47 191.8 202 48.5
CsaV3_5G036280 Cucumis sativus L. HOM05D003576 ORTHO05D004124 8.2e-47 191.8 212 49.1
HanXRQChr15g0496951 Helianthus annuus HOM05D003576 ORTHO05D004124 8.2e-47 191.8 202 49.0
CSS0018972 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.8e-46 190.7 202 48.0
CSS0040774 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.8e-46 190.7 202 48.0
Medtr6g033535 Medicago truncatula HOM05D003576 ORTHO05D004124 1.8e-46 190.7 202 47.5
Potri.008G039500 Populus trichocarpa HOM05D003576 ORTHO05D004124 1.8e-46 190.7 202 48.0
Potri.010G222800 Populus trichocarpa HOM05D003576 ORTHO05D004124 1.8e-46 190.7 202 47.5
TPR.G36712 Trifolium pratense HOM05D003576 ORTHO05D004124 1.8e-46 190.7 202 48.0
Ciclev10032124m.g Citrus clementina HOM05D003576 ORTHO05D004124 2.4e-46 190.3 202 47.5
Sabra08G0027100 Salix brachista HOM05D003576 ORTHO05D004124 2.4e-46 190.3 204 47.5
Dinv36441 Davidia involucrata HOM05D003576 ORTHO05D004124 5.3e-46 189.1 258 41.5
QL08p055786 Quercus lobata HOM05D003576 ORTHO05D004124 5.3e-46 189.1 202 46.5
THA.LOC104827300 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 5.3e-46 189.1 202 48.0
MSTRG.374 Avicennia marina HOM05D003576 ORTHO05D004124 9.1e-46 188.3 202 47.0
FAN15G0532 Fragaria x ananassa HOM05D003576 ORTHO05D004124 9.1e-46 188.3 213 47.4
AL6G24180 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 1.2e-45 188.0 212 47.6
AUR62037754 Chenopodium quinoa HOM05D003576 ORTHO05D004124 1.2e-45 188.0 226 44.7
AT5G13570 Arabidopsis thaliana HOM05D003576 ORTHO05D004124 1.5e-45 187.6 212 48.1
CARHR199870 Cardamine hirsuta HOM05D003576 ORTHO05D004124 1.5e-45 187.6 202 49.0
Carub.0006s1173 Capsella rubella HOM05D003576 ORTHO05D004124 3.4e-45 186.4 212 47.6
MELO3C012428.2 Cucumis melo HOM05D003576 ORTHO05D004124 3.4e-45 186.4 196 49.5
CiPaw.02G173900 Carya illinoinensis HOM05D003576 ORTHO05D004124 1.0e-44 184.9 202 47.5
Thhalv10014094m.g Eutrema salsugineum HOM05D003576 ORTHO05D004124 1.0e-44 184.9 202 48.5
TWI15G0705 Tripterygium wilfordii HOM05D003576 ORTHO05D004124 1.0e-44 184.9 202 47.5
BcaB01g05348 Brassica carinata HOM05D003576 ORTHO05D004124 1.3e-44 184.5 202 48.5
BcaC04g19105 Brassica carinata HOM05D003576 ORTHO05D004124 1.3e-44 184.5 202 49.0
BcaNung01897 Brassica carinata HOM05D003576 ORTHO05D004124 1.3e-44 184.5 202 48.5
THA.LOC104809882 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 1.3e-44 184.5 202 47.5
BcaNung06333 Brassica carinata HOM05D003576 ORTHO05D004124 1.7e-44 184.1 202 48.5
C02p06240 Brassica napus HOM05D003576 ORTHO05D004124 1.7e-44 184.1 202 48.5
BolC2t06566H Brassica oleracea HOM05D003576 ORTHO05D004124 1.7e-44 184.1 202 48.5
A02p02030 Brassica napus HOM05D003576 ORTHO05D004124 2.2e-44 183.7 202 48.5
Sp6g30460 Schrenkiella parvula HOM05D003576 ORTHO05D004124 2.2e-44 183.7 202 48.0
Actinidia06773 Actinidia chinensis HOM05D003576 ORTHO05D004124 6.5e-44 182.2 185 48.6
BcaC04g19106 Brassica carinata HOM05D003576 ORTHO05D004124 8.5e-44 181.8 202 47.5
BcaB06g27487 Brassica carinata HOM05D003576 ORTHO05D004124 1.4e-43 181.0 200 46.5
CiPaw.01G272700 Carya illinoinensis HOM05D003576 ORTHO05D004124 1.4e-43 181.0 216 44.9
CBR_g39890 Chara braunii HOM05D003576 ORTHO05D004124 1.4e-43 181.0 190 46.3
PGR044G0669 Punica granatum HOM05D003576 ORTHO05D004124 2.5e-43 180.3 204 44.6
C09p63530 Brassica napus HOM05D003576 ORTHO05D004124 4.2e-43 179.5 202 47.0
BolC9t59197H Brassica oleracea HOM05D003576 ORTHO05D004124 4.2e-43 179.5 202 46.5
MCO14G142 Micromonas commoda HOM05D003576 ORTHO05D004124 7.2e-43 178.7 212 46.2
Migut.F01761 Erythranthe guttata HOM05D003576 ORTHO05D004124 9.4e-43 178.3 202 45.5
SHI19520 Sapria himalayana HOM05D003576 ORTHO05D004124 1.2e-42 177.9 202 45.5
BraA04t16999Z Brassica rapa HOM05D003576 ORTHO05D004124 2.7e-42 176.8 200 45.5
unitig_699.g19224 Utricularia gibba HOM05D003576 ORTHO05D004124 2.7e-42 176.8 192 47.9
FAN24G3530 Fragaria x ananassa HOM05D003576 ORTHO05D004124 3.6e-42 176.4 202 47.0
BraA04t16993Z Brassica rapa HOM05D003576 ORTHO05D004124 4.7e-42 176.0 200 45.0
C04p47110 Brassica napus HOM05D003576 ORTHO05D004124 6.1e-42 175.6 200 45.5
BraA04t16996Z Brassica rapa HOM05D003576 ORTHO05D004124 6.1e-42 175.6 200 45.0
BcaB06g27496 Brassica carinata HOM05D003576 ORTHO05D004124 1.0e-41 174.9 201 47.3
A04p13320 Brassica napus HOM05D003576 ORTHO05D004124 1.0e-41 174.9 200 45.5
BraA04t16990Z Brassica rapa HOM05D003576 ORTHO05D004124 1.8e-41 174.1 200 45.5
Peaxi162Scf01175g00019 Petunia axillaris HOM05D003576 ORTHO05D004124 1.8e-41 174.1 202 47.5
Cfa023847 Carpinus fangiana HOM05D003576 ORTHO05D004124 2.3e-41 173.7 227 44.5
A10p24700 Brassica napus HOM05D003576 ORTHO05D004124 3.0e-41 173.3 202 46.0
BolC4t26305H Brassica oleracea HOM05D003576 ORTHO05D004124 3.0e-41 173.3 200 45.0
BolC4t26310H Brassica oleracea HOM05D003576 ORTHO05D004124 3.0e-41 173.3 200 45.0
A04p13340 Brassica napus HOM05D003576 ORTHO05D004124 6.7e-41 172.2 200 44.5
A04p13380 Brassica napus HOM05D003576 ORTHO05D004124 6.7e-41 172.2 200 44.5
A04p13410 Brassica napus HOM05D003576 ORTHO05D004124 6.7e-41 172.2 200 44.5
C04p47100 Brassica napus HOM05D003576 ORTHO05D004124 6.7e-41 172.2 200 44.5
BraA04t16997Z Brassica rapa HOM05D003576 ORTHO05D004124 6.7e-41 172.2 202 45.0
A04p13360 Brassica napus HOM05D003576 ORTHO05D004124 1.1e-40 171.4 200 44.5
BolC4t26304H Brassica oleracea HOM05D003576 ORTHO05D004124 1.5e-40 171.0 200 44.5
BraA10t44533Z Brassica rapa HOM05D003576 ORTHO05D004124 2.0e-40 170.6 202 45.5
BcaNung01144 Brassica carinata HOM05D003576 ORTHO05D004124 2.6e-40 170.2 203 46.8
MELO3C019797.2 Cucumis melo HOM05D003576 ORTHO05D004124 5.7e-40 169.1 161 52.8
SalBow3G2401 Salvia bowleyana HOM05D003576 ORTHO05D004124 5.7e-40 169.1 161 53.4
TAR636G0323 Trochodendron aralioides HOM05D003576 ORTHO05D004124 1.3e-39 167.9 168 48.8
Aa31LG11G7770 Aethionema arabicum HOM05D003576 ORTHO05D004124 1.7e-39 167.5 245 40.0
COL.COLO4_23659 Corchorus olitorius HOM05D003576 ORTHO05D004124 3.7e-39 166.4 195 45.6
BraA04t16991Z Brassica rapa HOM05D003576 ORTHO05D004124 6.3e-39 165.6 214 41.6
SGA_v2.0_scaffold100G29594 Striga asiatica HOM05D003576 ORTHO05D004124 1.2e-37 161.4 216 43.1
BcaB06g27493 Brassica carinata HOM05D003576 ORTHO05D004124 5.9e-37 159.1 201 44.8
CDE03G0119 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 1.7e-36 157.5 158 47.5
BcaC04g19104 Brassica carinata HOM05D003576 ORTHO05D004124 4.2e-35 152.9 202 45.5
Cre07.g344850 Chlamydomonas reinhardtii HOM05D003576 ORTHO05D004124 3.6e-34 149.8 222 39.2
BcaB06g27491 Brassica carinata HOM05D003576 ORTHO05D004124 5.2e-33 146.0 146 51.4
Zm00001eb290030 Zea mays HOM05D003576 ORTHO05D004124 9.7e-32 141.7 109 58.7
Cpa.g.sc53.83 Carica papaya HOM05D003576 ORTHO05D004124 2.8e-31 140.2 202 39.6
Zm00001eb366000 Zea mays HOM05D003576 ORTHO05D004124 4.1e-30 136.3 109 57.8
BcaB06g27489 Brassica carinata HOM05D003576 ORTHO05D004124 9.1e-30 135.2 173 43.9
Ah.10g032640 Amaranthus hybridus HOM05D003576 ORTHO05D004124 2.6e-29 133.7 202 37.6
Duzib114G0196 Durio zibethinus HOM05D003576 ORTHO05D004124 4.5e-29 132.9 202 38.6
FAN15G1487 Fragaria x ananassa HOM05D003576 ORTHO05D004124 7.2e-27 125.6 121 53.7
Haze_16891 Corylus avellana HOM05D003576 ORTHO05D004124 2.1e-26 124.0 225 35.1
CDE03G0459 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 1.2e-24 118.2 118 52.5
A04p13390 Brassica napus HOM05D003576 ORTHO05D004124 1.1e-22 111.7 101 52.5
BolC4t26308H Brassica oleracea HOM05D003576 ORTHO05D004124 1.4e-22 111.3 101 51.5
Sp7g03020 Schrenkiella parvula HOM05D003576 ORTHO05D004124 4.1e-22 109.8 150 40.7
SEGI_06233 Sequoiadendron giganteum HOM05D003576 ORTHO05D004124 4.1e-22 109.8 201 32.8
Zm00001eb305720 Zea mays HOM05D003576 ORTHO05D004124 4.5e-21 106.3 77 61.0
Ca_27771_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 7.7e-21 105.5 125 43.2
Sp3g29060 Schrenkiella parvula HOM05D003576 ORTHO05D004124 2.9e-20 103.6 163 36.8
Psat1g000080 Pisum sativum HOM05D003576 ORTHO05D004124 1.9e-19 100.9 190 35.8
CSS0030842 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 2.2e-15 87.4 148 33.8
C03p07100 Brassica napus HOM05D002836 ORTHO05D003107 7.0e-14 82.4 191 31.9
CSS0009257 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 2.9e-12 77.0 84 46.4
BolC3t13209H Brassica oleracea HOM05D003576 ORTHO05D004124 6.6e-12 75.9 200 31.0
AL4G23990 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 1.1e-11 75.1 124 37.9
Ah.16g106400 Amaranthus hybridus HOM05D003576 ORTHO05D004124 5.6e-11 72.8 210 28.1
C04p47130 Brassica napus HOM05D003576 ORTHO05D004124 1.0e-09 68.6 59 55.9
TAR636G2201 Trochodendron aralioides HOM05D003576 ORTHO05D004124 1.0e-09 68.6 76 48.7
Oeu017646.1 Olea europaea HOM05D003576 ORTHO05D004124 4.0e-09 66.6 94 36.2
Ca_07562_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 6.8e-09 65.9 104 34.6
Psat1g098680 Pisum sativum HOM05D003576 ORTHO05D004124 1.5e-08 64.7 94 36.2


User provided reference genes

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