Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00003318 Prasinoderma coloniale HOM05D003107 ORTHO05D003092 0.0e+00 1647.9 935 100.0
Lalb_Chr11g0063981 Lupinus albus HOM05D003107 ORTHO05D003092 2.5e-16 92.0 167 37.1
ECA240G4010 Erigeron canadensis HOM05D003107 ORTHO05D003092 3.3e-16 91.7 112 43.8
ECA233G2849 Erigeron canadensis HOM05D003107 ORTHO05D008984 4.3e-16 91.3 125 40.0
Gohir.D08G257700 Gossypium hirsutum HOM05D003107 ORTHO05D003092 4.3e-16 91.3 137 39.4
Gorai.004G274700 Gossypium raimondii HOM05D003107 ORTHO05D003092 4.3e-16 91.3 137 39.4
RcHm_v2.0_Chr6g0312791 Rosa chinensis HOM05D003107 ORTHO05D003092 7.4e-16 90.5 169 38.5
Aqoxy1G02257 Aquilegia oxysepala HOM05D003107 ORTHO05D003092 9.6e-16 90.1 166 36.1
Gohir.A08G237100 Gossypium hirsutum HOM05D003107 ORTHO05D003092 9.6e-16 90.1 151 37.7
HanXRQChr03g0078061 Helianthus annuus HOM05D003107 ORTHO05D003092 9.6e-16 90.1 163 34.4
Cc08_g08330 Coffea canephora HOM05D003107 ORTHO05D003092 1.3e-15 89.7 215 34.4
Lsat_1_v5_gn_6_10880 Lactuca sativa HOM05D003107 ORTHO05D008984 3.7e-15 88.2 118 41.5
CsaV3_3G046670 Cucumis sativus L. HOM05D003107 ORTHO05D003092 4.8e-15 87.8 170 37.6
Potri.006G246800 Populus trichocarpa HOM05D003107 ORTHO05D003092 4.8e-15 87.8 134 40.3
HPP92_014684 Vanilla planifolia HOM05D003107 ORTHO05D003092 6.2e-15 87.4 114 43.9
COL.COLO4_24054 Corchorus olitorius HOM05D003107 ORTHO05D003092 8.1e-15 87.0 158 36.7
Lalb_Chr08g0243801 Lupinus albus HOM05D003107 ORTHO05D003092 8.1e-15 87.0 173 35.8
Nn8g39282 Nelumbo nucifera HOM05D003107 ORTHO05D003092 8.1e-15 87.0 143 37.8
CDE07G1548 Ceratophyllum demersum HOM05D003107 ORTHO05D003092 1.1e-14 86.7 112 42.0
TAR624G0964 Trochodendron aralioides HOM05D003107 ORTHO05D003092 1.1e-14 86.7 139 37.4
Lj1g0004393 Lotus japonicus HOM05D003107 ORTHO05D003092 1.8e-14 85.9 118 41.5
Atru.chr7.2327 Acer truncatum HOM05D003107 ORTHO05D003092 2.4e-14 85.5 151 38.4
EL10Ac2g02541 Beta vulgaris HOM05D003107 ORTHO05D003092 2.4e-14 85.5 136 41.9
ClCG05G017190 Citrullus lanatus HOM05D003107 ORTHO05D003092 2.4e-14 85.5 148 38.5
DCAR_023265 Daucus carota HOM05D003107 ORTHO05D003092 2.4e-14 85.5 165 36.4
Prupe.7G018800 Prunus persica HOM05D003107 ORTHO05D003092 2.4e-14 85.5 123 41.5
SalBow8G1653 Salvia bowleyana HOM05D003107 ORTHO05D003092 2.4e-14 85.5 118 42.4
SalBow8G2039 Salvia bowleyana HOM05D003107 ORTHO05D003092 2.4e-14 85.5 118 42.4
TAR383G1012 Trochodendron aralioides HOM05D003107 ORTHO05D003092 2.4e-14 85.5 129 41.9
SEGI_27893 Sequoiadendron giganteum HOM05D003107 ORTHO05D003092 3.1e-14 85.1 129 41.9
TPR.G34688 Trifolium pratense HOM05D003107 ORTHO05D003092 3.1e-14 85.1 118 40.7
MELO3C003671.2 Cucumis melo HOM05D003107 ORTHO05D003092 4.0e-14 84.7 169 36.7
Sc09g0008850 Simmondsia chinensis HOM05D003107 ORTHO05D003092 4.0e-14 84.7 114 42.1
Nitab4.5_0000125g0300 Nicotiana tabacum HOM05D003107 ORTHO05D003092 5.3e-14 84.3 114 39.5
Cpa.g.sc91.11 Carica papaya HOM05D003107 ORTHO05D003092 6.9e-14 84.0 140 37.9
Eucgr.C01815 Eucalyptus grandis HOM05D003107 ORTHO05D003092 6.9e-14 84.0 187 34.2
FAN24G3197 Fragaria x ananassa HOM05D003107 ORTHO05D003092 6.9e-14 84.0 242 30.6
Oeu014658.2 Olea europaea HOM05D003107 ORTHO05D003092 6.9e-14 84.0 138 37.0
Potri.018G034500 Populus trichocarpa HOM05D003107 ORTHO05D003092 6.9e-14 84.0 167 37.1
FvH4_2g30140 Fragaria vesca HOM05D003107 ORTHO05D003092 9.0e-14 83.6 242 30.6
FAN27G2221 Fragaria x ananassa HOM05D003107 ORTHO05D003092 9.0e-14 83.6 242 30.6
QL12p031313 Quercus lobata HOM05D003107 ORTHO05D003092 9.0e-14 83.6 167 35.9
MSTRG.14000 Avicennia marina HOM05D003107 ORTHO05D003092 1.2e-13 83.2 167 34.7
MD08G1136900 Malus domestica HOM05D003107 ORTHO05D003092 1.2e-13 83.2 132 38.6
MSTRG.11738 Avicennia marina HOM05D003107 ORTHO05D003092 1.5e-13 82.8 133 39.1
BolC7t44759H Brassica oleracea HOM05D003107 ORTHO05D003092 1.5e-13 82.8 152 36.8
Migut.A00276 Erythranthe guttata HOM05D003107 ORTHO05D003092 1.5e-13 82.8 205 32.7
FAN20G1668 Fragaria x ananassa HOM05D003107 ORTHO05D003092 1.5e-13 82.8 240 30.0
MD15G1115600 Malus domestica HOM05D003107 ORTHO05D003092 1.5e-13 82.8 137 38.0
Peaxi162Scf00105g01432 Petunia axillaris HOM05D003107 ORTHO05D003092 1.5e-13 82.8 114 39.5
TWI32G0172 Tripterygium wilfordii HOM05D003107 ORTHO05D003092 1.5e-13 82.8 128 39.8
AagrBONN_evm.TU.Sc2ySwM_344.4237 Anthoceros agrestis HOM05D003107 ORTHO05D003092 2.0e-13 82.4 167 35.3
arahy.Tifrunner.gnm1.ann1.8TMD5Z Arachis hypogaea HOM05D003107 ORTHO05D003092 2.0e-13 82.4 148 37.8
Cfa013207 Carpinus fangiana HOM05D003107 ORTHO05D003092 2.0e-13 82.4 152 38.2
CDE06G1195 Ceratophyllum demersum HOM05D003107 ORTHO05D003092 2.0e-13 82.4 178 31.5
Duzib187G0318 Durio zibethinus HOM05D003107 ORTHO05D003092 2.0e-13 82.4 151 36.4
Gorai.009G011500 Gossypium raimondii HOM05D003107 ORTHO05D003092 2.0e-13 82.4 134 38.8
Manes.03G065000 Manihot esculenta HOM05D003107 ORTHO05D003092 2.0e-13 82.4 107 42.1
Nitab4.5_0006579g0010 Nicotiana tabacum HOM05D003107 ORTHO05D003092 2.0e-13 82.4 114 39.5
Os02g0208600 Oryza sativa ssp. japonica HOM05D003107 ORTHO05D003092 2.0e-13 82.4 174 36.2
PSO017G1142 Papaver somniferum HOM05D003107 ORTHO05D003092 2.0e-13 82.4 136 36.8
PSO170G1884 Papaver somniferum HOM05D003107 ORTHO05D003092 2.0e-13 82.4 136 36.8
C07p42300 Brassica napus HOM05D003107 ORTHO05D003092 2.6e-13 82.0 152 36.8
THA.LOC104799220 Tarenaya hassleriana HOM05D003107 ORTHO05D003092 2.6e-13 82.0 107 41.1
arahy.Tifrunner.gnm1.ann1.YCI793 Arachis hypogaea HOM05D003107 ORTHO05D003092 3.4e-13 81.6 142 37.3
A06p36230 Brassica napus HOM05D003107 ORTHO05D003092 3.4e-13 81.6 164 34.8
AUR62024841 Chenopodium quinoa HOM05D003107 ORTHO05D003092 3.4e-13 81.6 133 37.6
AUR62032378 Chenopodium quinoa HOM05D003107 ORTHO05D003092 3.4e-13 81.6 133 37.6
Haze_21621 Corylus avellana HOM05D003107 ORTHO05D003092 3.4e-13 81.6 155 36.1
HanXRQChr13g0409611 Helianthus annuus HOM05D003107 ORTHO05D003092 3.4e-13 81.6 112 40.2
Dinv30213 Davidia involucrata HOM05D003107 ORTHO05D003092 4.5e-13 81.3 114 40.4
VMungo1309G0300 Vigna mungo HOM05D003107 ORTHO05D003092 4.5e-13 81.3 143 37.1
GSVIVG01035723001 Vitis vinifera HOM05D003107 ORTHO05D003092 4.5e-13 81.3 163 33.7
Phvul.009G097700 Phaseolus vulgaris HOM05D003107 ORTHO05D003092 5.8e-13 80.9 143 37.8
SGA_v2.0_scaffold27G11488 Striga asiatica HOM05D003107 ORTHO05D003092 5.8e-13 80.9 151 38.4
Lsat_1_v5_gn_1_50961 Lactuca sativa HOM05D003107 ORTHO05D003092 7.6e-13 80.5 101 42.6
Sed0020655 Sechium edule HOM05D003107 ORTHO05D003092 7.6e-13 80.5 188 31.9
CANSAT25G0565 Cannabis sativa HOM05D003107 ORTHO05D003092 9.9e-13 80.1 147 34.0
CiPaw.08G015500 Carya illinoinensis HOM05D003107 ORTHO05D003092 1.3e-12 79.7 112 39.3
FAN15G0271 Fragaria x ananassa HOM05D003107 ORTHO05D003092 1.3e-12 79.7 242 30.2
SalBow4G2455 Salvia bowleyana HOM05D003107 ORTHO05D003092 1.3e-12 79.7 152 36.2
Rhsim02G0187500 Rhododendron simsii HOM05D003107 ORTHO05D003092 1.7e-12 79.3 112 39.3
Sed0012229 Sechium edule HOM05D003107 ORTHO05D003092 1.7e-12 79.3 176 33.5
ATR0037G038 Amborella trichopoda HOM05D003107 ORTHO05D003092 2.2e-12 79.0 117 38.5
Sabra06G0193100 Salix brachista HOM05D003107 ORTHO05D003092 2.2e-12 79.0 166 34.9
Sabra18G0035100 Salix brachista HOM05D003107 ORTHO05D003092 2.2e-12 79.0 167 35.3
unitig_85.g27160 Utricularia gibba HOM05D003107 ORTHO05D003092 2.2e-12 79.0 151 34.4
CARHR201800 Cardamine hirsuta HOM05D003107 ORTHO05D003092 3.8e-12 78.2 129 36.4
SHI18617 Sapria himalayana HOM05D003107 ORTHO05D003092 3.8e-12 78.2 159 34.6
unitig_578.g16600 Utricularia gibba HOM05D003107 ORTHO05D003092 3.8e-12 78.2 123 37.4
AT5G25520 Arabidopsis thaliana HOM05D003107 ORTHO05D003092 4.9e-12 77.8 167 31.7
vmacro05445 Vaccinium macrocarpon HOM05D003107 ORTHO05D003092 4.9e-12 77.8 154 33.8
Ca_15699_v3 Cicer arietinum L. HOM05D003107 ORTHO05D003092 6.4e-12 77.4 196 30.6
Glyma.04G071900 Glycine max HOM05D003107 ORTHO05D003092 6.4e-12 77.4 192 32.3
Zm00001eb205470 Zea mays HOM05D003107 ORTHO05D003092 8.4e-12 77.0 210 31.4
Thhalv10012648m.g Eutrema salsugineum HOM05D003107 ORTHO05D003092 1.4e-11 76.3 186 31.2
BcaB08g37060 Brassica carinata HOM05D003107 ORTHO05D003092 1.9e-11 75.9 154 32.5
Carub.0006s2338 Capsella rubella HOM05D003107 ORTHO05D003092 1.9e-11 75.9 165 33.3
AL6G37320 Arabidopsis lyrata HOM05D003107 ORTHO05D003092 2.4e-11 75.5 167 31.7
AT5G11430 Arabidopsis thaliana HOM05D003107 ORTHO05D003092 2.4e-11 75.5 205 31.2
CiPaw.07G217900 Carya illinoinensis HOM05D003107 ORTHO05D003092 2.4e-11 75.5 143 35.7
BcaC02g08335 Brassica carinata HOM05D003107 ORTHO05D003092 3.2e-11 75.1 134 34.3
C04p55580 Brassica napus HOM05D003107 ORTHO05D003092 3.2e-11 75.1 134 34.3
BolC4t27082H Brassica oleracea HOM05D003107 ORTHO05D003092 3.2e-11 75.1 134 34.3
CARHR115650 Cardamine hirsuta HOM05D003107 ORTHO05D003092 3.2e-11 75.1 131 34.4
THA.LOC104819888 Tarenaya hassleriana HOM05D003107 ORTHO05D003092 3.2e-11 75.1 121 38.0
AT2G25640 Arabidopsis thaliana HOM05D003107 ORTHO05D003092 5.5e-11 74.3 175 31.4
C09p65430 Brassica napus HOM05D003107 ORTHO05D003092 5.5e-11 74.3 188 29.8
AL6G22090 Arabidopsis lyrata HOM05D003107 ORTHO05D003092 7.1e-11 73.9 205 30.7
Glyma.06G073200 Glycine max HOM05D003107 ORTHO05D003092 9.3e-11 73.6 191 32.5
AL4G17160 Arabidopsis lyrata HOM05D003107 ORTHO05D003092 1.2e-10 73.2 175 31.4
BcaC04g19228 Brassica carinata HOM05D003107 ORTHO05D003092 1.6e-10 72.8 188 29.8
A10p26320 Brassica napus HOM05D003107 ORTHO05D003092 1.6e-10 72.8 188 29.3
BraA10t44689Z Brassica rapa HOM05D003107 ORTHO05D003092 1.6e-10 72.8 188 29.3
Pp3c15_21040 Physcomitrium patens HOM05D003107 ORTHO05D003092 1.6e-10 72.8 508 25.6
Nn2g11838 Nelumbo nucifera HOM05D003107 ORTHO05D003092 2.1e-10 72.4 434 25.1
Cre02.g073250 Chlamydomonas reinhardtii HOM05D003107 ORTHO05D003092 4.6e-10 71.2 153 35.9
Thhalv10000617m.g Eutrema salsugineum HOM05D003107 ORTHO05D003092 4.6e-10 71.2 133 33.1
Actinidia15709 Actinidia chinensis HOM05D003107 ORTHO05D003092 6.0e-10 70.9 426 24.9
Gohir.A05G010400 Gossypium hirsutum HOM05D003107 ORTHO05D003092 7.9e-10 70.5 434 24.7
A04p19850 Brassica napus HOM05D003107 ORTHO05D003092 1.0e-09 70.1 182 30.8
BraA04t17572Z Brassica rapa HOM05D003107 ORTHO05D003092 1.0e-09 70.1 182 30.8
Mapoly0098s0013 Marchantia polymorpha HOM05D003107 ORTHO05D003092 1.0e-09 70.1 527 24.7
Sp6g32170 Schrenkiella parvula HOM05D003107 ORTHO05D003092 1.0e-09 70.1 164 30.5
BcaB06g28082 Brassica carinata HOM05D003107 ORTHO05D003092 1.3e-09 69.7 188 30.3
CAN.G21.2 Capsicum annuum HOM05D003107 ORTHO05D003092 1.8e-09 69.3 432 24.5
Lj7A713T53 Lonicera japonica HOM05D003107 ORTHO05D003092 2.3e-09 68.9 424 23.8
PGR031G3499 Punica granatum HOM05D003107 ORTHO05D003092 2.3e-09 68.9 420 23.3
Zm00001eb240410 Zea mays HOM05D003107 ORTHO05D003092 5.1e-09 67.8 476 24.2
Actinidia13287 Actinidia chinensis HOM05D003107 ORTHO05D003092 6.7e-09 67.4 429 23.8
Gohir.D05G011200 Gossypium hirsutum HOM05D003107 ORTHO05D003092 6.7e-09 67.4 434 24.7
BraA06t26545Z Brassica rapa HOM05D003107 ORTHO05D003092 1.5e-08 66.2 387 24.3
Duzib150G0475 Durio zibethinus HOM05D003107 ORTHO05D003092 3.3e-08 65.1 381 24.9
Pp3c9_22950 Physcomitrium patens HOM05D003107 ORTHO05D003092 3.3e-08 65.1 486 25.3
PGSC0003DMG400033626 Solanum tuberosum HOM05D003107 ORTHO05D003092 3.3e-08 65.1 435 23.4
Nitab4.5_0000375g0290 Nicotiana tabacum HOM05D002276 ORTHO05D002381 4.3e-08 64.7 123 30.9
Duzib168G1962 Durio zibethinus HOM05D003107 ORTHO05D003092 5.6e-08 64.3 431 23.4
Sopen08g021720 Solanum pennellii HOM05D003107 ORTHO05D003092 5.6e-08 64.3 423 24.1
MCO11G327 Micromonas commoda HOM05D003107 ORTHO05D003092 7.4e-08 63.9 521 25.9
TWI75G1748 Tripterygium wilfordii HOM05D002276 ORTHO05D002381 9.6e-08 63.5 151 31.1
SMO200G0185 Selaginella moellendorffii HOM05D003107 ORTHO05D003092 1.3e-07 63.2 51 58.8
Nitab4.5_0011372g0010 Nicotiana tabacum HOM05D002276 ORTHO05D002381 1.6e-07 62.8 123 30.1
Solyc08g067790.4 Solanum lycopersicum HOM05D003107 ORTHO05D003092 1.6e-07 62.8 423 23.9
Psat5g027640 Pisum sativum HOM05D003107 ORTHO05D003092 2.1e-07 62.4 425 24.0
CARHR133240 Cardamine hirsuta HOM05D002276 ORTHO05D002381 2.8e-07 62.0 123 36.6
Peaxi162Scf00167g01124 Petunia axillaris HOM05D002276 ORTHO05D002381 2.8e-07 62.0 123 30.1
Gohir.A10G153500 Gossypium hirsutum HOM05D002276 ORTHO05D002381 3.7e-07 61.6 104 35.6
unitig_46.g18751 Utricularia gibba HOM05D002276 ORTHO05D002381 3.7e-07 61.6 111 30.6
Ciclev10007403m.g Citrus clementina HOM05D003107 ORTHO05D003092 4.8e-07 61.2 442 22.9
Rhsim05G0231600 Rhododendron simsii HOM05D002276 ORTHO05D002381 4.8e-07 61.2 107 37.4
Sp4g05210 Schrenkiella parvula HOM05D003107 ORTHO05D003092 4.8e-07 61.2 243 26.3
THA.LOC104815043 Tarenaya hassleriana HOM05D003107 ORTHO05D003092 4.8e-07 61.2 422 23.0
Manes.08G170400 Manihot esculenta HOM05D002276 ORTHO05D002381 6.2e-07 60.8 145 32.4
CSS0009859 Camellia sinensis var. sinensis HOM05D003107 ORTHO05D003092 8.2e-07 60.5 388 23.2
CSS0021250 Camellia sinensis var. sinensis HOM05D003107 ORTHO05D003092 8.2e-07 60.5 388 23.2
CARHR187870 Cardamine hirsuta HOM05D003107 ORTHO05D003092 1.1e-06 60.1 372 22.8
CDE04G3441 Ceratophyllum demersum HOM05D002276 ORTHO05D002381 1.1e-06 60.1 169 29.6
Medtr3g108010 Medicago truncatula HOM05D003107 ORTHO05D003092 1.1e-06 60.1 422 24.4
Manes.10G002900 Manihot esculenta HOM05D002276 ORTHO05D002381 1.4e-06 59.7 87 35.6
MBI03_g05806_MAGBIO Magnolia biondii HOM05D002276 ORTHO05D002381 1.8e-06 59.3 160 30.0
Aa31LG3G15760 Aethionema arabicum HOM05D003107 ORTHO05D003092 3.1e-06 58.5 377 22.3
Sabra06G0085000 Salix brachista HOM05D002276 ORTHO05D002381 3.1e-06 58.5 87 35.6
Rhsim04G0121300 Rhododendron simsii HOM05D002276 ORTHO05D002381 4.0e-06 58.2 89 37.1
Sopen03g025650 Solanum pennellii HOM05D002276 ORTHO05D002381 4.0e-06 58.2 99 31.3
unitig_37.g12475 Utricularia gibba HOM05D002276 ORTHO05D002381 4.0e-06 58.2 111 29.7
Dinv16968 Davidia involucrata HOM05D002276 ORTHO05D002381 5.3e-06 57.8 162 31.5
Gohir.A09G213664 Gossypium hirsutum HOM05D002276 ORTHO05D002381 5.3e-06 57.8 75 40.0
Lj1g0009031 Lotus japonicus HOM05D002276 ORTHO05D002381 5.3e-06 57.8 174 28.2
Sp4g20900 Schrenkiella parvula HOM05D002276 ORTHO05D002381 5.3e-06 57.8 98 35.7
THA.LOC104823349 Tarenaya hassleriana HOM05D002276 ORTHO05D002381 5.3e-06 57.8 127 30.7
PGSC0003DMG400020602 Solanum tuberosum HOM05D002276 ORTHO05D002381 6.9e-06 57.4 125 28.8
VMungo1309G1834 Vigna mungo HOM05D002276 ORTHO05D002381 6.9e-06 57.4 128 31.2
Ciclev10011982m.g Citrus clementina HOM05D002276 ORTHO05D002381 9.0e-06 57.0 126 32.5
Thhalv10019809m.g Eutrema salsugineum HOM05D002276 ORTHO05D002381 9.0e-06 57.0 138 28.3
Mapoly0003s0175 Marchantia polymorpha HOM05D002276 ORTHO05D002381 9.0e-06 57.0 119 30.3
Nn2g10273 Nelumbo nucifera HOM05D002276 ORTHO05D002381 9.0e-06 57.0 161 32.3
PSO384G2188 Papaver somniferum HOM05D002276 ORTHO05D002381 9.0e-06 57.0 163 28.2
Solyc03g095720.3 Solanum lycopersicum HOM05D002276 ORTHO05D002381 9.0e-06 57.0 99 30.3
Solyc05g052190.4 Solanum lycopersicum HOM05D002276 ORTHO05D002381 9.0e-06 57.0 161 27.3
TWI75G1318 Tripterygium wilfordii HOM05D002276 ORTHO05D002381 9.0e-06 57.0 100 35.0


User provided reference genes

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