Gene: AT5G25520

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G25520
  • Transcript Identifier AT5G25520.6
  • Gene Type Coding gene
  • Location Chr5 : 8885550-8889484 : positive

Gene Family Information

  • ID HOM05D003107
  • #Genes/#Species 220/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G25520.6
  • uniprot Q8GYX6

Descriptions

  • Description SPOC domain / Transcription elongation factor S-II protein
  • Computational description SPOC domain / Transcription elongation factor S-II protein; INVOLVED IN: transcription; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Spen paralogue and orthologue SPOC, C-terminal (InterPro:IPR012921), Transcription elongation factor S-II, central domain (InterPro:IPR003618); BEST Arabidopsis thaliana protein match is: SPOC domain / Transcription elongation factor S-II protein (TAIR:AT5G11430.1); Has 2128 Blast hits to 1752 proteins in 300 species: Archae - 0; Bacteria - 197; Metazoa - 863; Fungi - 365; Plants - 186; Viruses - 5; Other Eukaryotes - 512 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006351
IBA
IEA
Gene Ontologytranscription, DNA-templated1
GO:0006351
IEA
InterProtranscription, DNA-templated
GO:0006414
IEA
GOA Databasetranslational elongation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003746
IEA
GOA Databasetranslation elongation factor activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM, IBA
Gene Ontologynucleus1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003618 Transcription elongation factor S-II, central domain
IPR012921 Spen paralogue and orthologue SPOC, C-terminal
IPR036575 Transcription elongation factor S-II, central domain superfamily
Mapman id Description
15.3.7.1 RNA biosynthesis.RNA polymerase II-dependent transcription.upstream transcription pausing.regulatory protein (BDR)