Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG402004368 Solanum tuberosum HOM05D001849 ORTHO05D004689 9.4e-36 152.9 73 100.0
Solyc12g049410.3 Solanum lycopersicum HOM05D001849 ORTHO05D004689 2.3e-34 148.3 71 97.2
Sopen12g023890 Solanum pennellii HOM05D001849 ORTHO05D004689 2.3e-34 148.3 71 97.2
Peaxi162Scf00177g00518 Petunia axillaris HOM05D001849 ORTHO05D004689 4.5e-30 134.0 73 86.3
Nitab4.5_0004322g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 2.2e-29 131.7 73 86.3
Nitab4.5_0000189g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 8.5e-29 129.8 73 84.9
CAN.G1243.9 Capsicum annuum HOM05D001849 ORTHO05D004689 3.2e-28 127.9 73 87.7
vmacro15054 Vaccinium macrocarpon HOM05D001849 ORTHO05D004689 1.4e-23 112.5 73 72.6
Cc04_g01040 Coffea canephora HOM05D001849 ORTHO05D004689 7.0e-23 110.2 73 74.0
Lj9C535G6 Lonicera japonica HOM05D001849 ORTHO05D004689 9.1e-23 109.8 73 72.6
CSS0003623 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 5.9e-22 107.1 73 71.2
Oeu008524.4 Olea europaea HOM05D001849 ORTHO05D004689 1.0e-21 106.3 73 69.9
CSS0020628 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.7e-21 105.5 73 71.2
CSS0036362 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 3.8e-21 104.4 73 69.9
CSS0036951 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 3.8e-21 104.4 73 69.9
Dinv20408 Davidia involucrata HOM05D001849 ORTHO05D004689 3.8e-21 104.4 73 69.9
GSVIVG01016717001 Vitis vinifera HOM05D001849 ORTHO05D004689 3.8e-21 104.4 73 67.1
Actinidia32206 Actinidia chinensis HOM05D001849 ORTHO05D004689 1.1e-20 102.8 73 68.5
Hma1.2p1_0229F.1_g096760 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 1.1e-20 102.8 73 68.5
Hma1.2p1_0229F.1_g096770 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 1.1e-20 102.8 73 68.5
CSS0036461 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.5e-20 102.4 73 68.5
Eucgr.K02038 Eucalyptus grandis HOM05D001849 ORTHO05D004689 1.9e-20 102.1 73 65.8
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 3.3e-20 101.3 74 67.6
Migut.D00924 Erythranthe guttata HOM05D001849 ORTHO05D004689 2.1e-19 98.6 73 69.9
Gohir.A09G079900 Gossypium hirsutum HOM05D001849 ORTHO05D004689 2.1e-19 98.6 73 65.8
Gohir.D09G079550 Gossypium hirsutum HOM05D001849 ORTHO05D004689 2.1e-19 98.6 73 65.8
COL.COLO4_30797 Corchorus olitorius HOM05D001849 ORTHO05D004689 4.7e-19 97.4 73 65.8
PGR119G1999 Punica granatum HOM05D001849 ORTHO05D004689 6.1e-19 97.1 72 66.7
VMungo0331G1611 Vigna mungo HOM05D001849 ORTHO05D004689 6.1e-19 97.1 73 61.6
Duzib192G0006 Durio zibethinus HOM05D001849 ORTHO05D004689 1.0e-18 96.3 73 64.4
Prupe.3G037400 Prunus persica HOM05D001849 ORTHO05D004689 1.4e-18 95.9 73 65.8
Gorai.006G094800 Gossypium raimondii HOM05D001849 ORTHO05D004689 2.3e-18 95.1 71 64.8
Phvul.010G127100 Phaseolus vulgaris HOM05D001849 ORTHO05D004689 2.3e-18 95.1 73 60.3
Glyma.07G042000 Glycine max HOM05D001849 ORTHO05D004689 4.0e-18 94.4 73 60.3
SalBow7G1889 Salvia bowleyana HOM05D001849 ORTHO05D004689 4.0e-18 94.4 73 65.8
SGA_v2.0_scaffold4G02078 Striga asiatica HOM05D001849 ORTHO05D004689 4.0e-18 94.4 73 63.0
arahy.Tifrunner.gnm1.ann1.1RN2YG Arachis hypogaea HOM05D001849 ORTHO05D004689 8.9e-18 93.2 73 58.9
arahy.Tifrunner.gnm1.ann1.RMM65D Arachis hypogaea HOM05D001849 ORTHO05D004689 8.9e-18 93.2 73 58.9
Manes.11G016400 Manihot esculenta HOM05D001849 ORTHO05D004689 8.9e-18 93.2 73 61.6
TPR.G29992 Trifolium pratense HOM05D001849 ORTHO05D004689 8.9e-18 93.2 73 60.3
Cfa003503 Carpinus fangiana HOM05D001849 ORTHO05D004689 1.2e-17 92.8 73 63.0
Duzib235G0671 Durio zibethinus HOM05D001849 ORTHO05D004689 1.2e-17 92.8 73 63.0
MD09G1178100 Malus domestica HOM05D001849 ORTHO05D004689 2.6e-17 91.7 73 64.4
MD17G1148600 Malus domestica HOM05D001849 ORTHO05D004689 2.6e-17 91.7 73 64.4
Thecc.06G124800 Theobroma cacao HOM05D001849 ORTHO05D004689 2.6e-17 91.7 73 60.3
Atru.chr2.1505 Acer truncatum HOM05D001849 ORTHO05D004689 4.4e-17 90.9 73 61.6
CANSAT56G0878 Cannabis sativa HOM05D001849 ORTHO05D004689 4.4e-17 90.9 73 63.0
Lalb_Chr10g0101321 Lupinus albus HOM05D001849 ORTHO05D004689 5.7e-17 90.5 73 57.5
unitig_578.g16691 Utricularia gibba HOM05D001849 ORTHO05D004689 5.7e-17 90.5 73 58.9
Ciclev10027090m.g Citrus clementina HOM05D001849 ORTHO05D004689 7.5e-17 90.1 73 63.0
DCAR_026423 Daucus carota HOM05D001849 ORTHO05D004689 7.5e-17 90.1 73 63.0
RcHm_v2.0_Chr2g0146431 Rosa chinensis HOM05D001849 ORTHO05D004689 9.8e-17 89.7 73 63.0
Lj3g0004011 Lotus japonicus HOM05D001849 ORTHO05D004689 1.7e-16 89.0 73 57.5
EL10Ac7g16444 Beta vulgaris HOM05D001849 ORTHO05D004689 2.8e-16 88.2 73 58.9
AUR62001443 Chenopodium quinoa HOM05D001849 ORTHO05D004689 2.8e-16 88.2 73 60.3
FvH4_6g35170 Fragaria vesca HOM05D001849 ORTHO05D004689 4.9e-16 87.4 73 61.6
FAN09G4066 Fragaria x ananassa HOM05D001849 ORTHO05D004689 4.9e-16 87.4 73 61.6
QL05p003662 Quercus lobata HOM05D001849 ORTHO05D004689 6.3e-16 87.0 73 58.9
Sabra01G0127400 Salix brachista HOM05D001849 ORTHO05D004689 6.3e-16 87.0 73 60.3
TAR626G0833 Trochodendron aralioides HOM05D001849 ORTHO05D004689 6.3e-16 87.0 73 60.3
AUR62009922 Chenopodium quinoa HOM05D001849 ORTHO05D004689 8.3e-16 86.7 73 58.9
TWI59G1440 Tripterygium wilfordii HOM05D001849 ORTHO05D004689 8.3e-16 86.7 73 56.2
Psat4g166880 Pisum sativum HOM05D001849 ORTHO05D004689 1.1e-15 86.3 73 56.2
FAN14G1459 Fragaria x ananassa HOM05D001849 ORTHO05D004689 1.4e-15 85.9 73 60.3
CiPaw.01G216000 Carya illinoinensis HOM05D001849 ORTHO05D004689 3.2e-15 84.7 73 60.3
Haze_16076 Corylus avellana HOM05D001849 ORTHO05D004689 4.1e-15 84.3 67 59.7
FAN05G2930 Fragaria x ananassa HOM05D001849 ORTHO05D004689 5.4e-15 84.0 73 58.9
MBI13_g01700_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 9.2e-15 83.2 72 54.2
Hund18672 Selenicereus undatus HOM05D001849 ORTHO05D004689 9.2e-15 83.2 73 57.5
Medtr8g022010 Medicago truncatula HOM05D001849 ORTHO05D004689 1.2e-14 82.8 74 54.1
Potri.001G165900 Populus trichocarpa HOM05D001849 ORTHO05D004689 1.2e-14 82.8 73 58.9
Aa31LG8G1350 Aethionema arabicum HOM05D001849 ORTHO05D004689 1.6e-14 82.4 71 57.7
ATR0681G401 Amborella trichopoda HOM05D001849 ORTHO05D004689 1.6e-14 82.4 73 56.2
AL3G26350 Arabidopsis lyrata HOM05D001849 ORTHO05D004689 1.6e-14 82.4 71 56.3
AT3G14120 Arabidopsis thaliana HOM05D001849 ORTHO05D004689 2.0e-14 82.0 71 56.3
Cpa.g.sc169.29 Carica papaya HOM05D001849 ORTHO05D004689 2.0e-14 82.0 73 61.6
Ca_23411_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004689 2.0e-14 82.0 73 56.2
BcaC05g29121 Brassica carinata HOM05D001849 ORTHO05D004689 2.7e-14 81.6 71 60.6
C05p53520 Brassica napus HOM05D001849 ORTHO05D004689 2.7e-14 81.6 71 60.6
Carub.0003s1373 Capsella rubella HOM05D001849 ORTHO05D004689 3.5e-14 81.3 71 54.9
Thhalv10019957m.g Eutrema salsugineum HOM05D001849 ORTHO05D004689 3.5e-14 81.3 71 56.3
FAN02G0489 Fragaria x ananassa HOM05D001849 ORTHO05D004689 4.6e-14 80.9 73 57.5
C01p50480 Brassica napus HOM05D001849 ORTHO05D004689 5.9e-14 80.5 71 54.9
BolC1t05000H Brassica oleracea HOM05D001849 ORTHO05D004689 5.9e-14 80.5 71 54.9
BraA05t22343Z Brassica rapa HOM05D001849 ORTHO05D004689 5.9e-14 80.5 71 59.2
PSO724G1390 Papaver somniferum HOM05D001849 ORTHO05D004689 1.0e-13 79.7 71 50.7
PSO386G0179 Papaver somniferum HOM05D001849 ORTHO05D004689 1.3e-13 79.3 71 50.7
BolC5t34029H Brassica oleracea HOM05D001849 ORTHO05D004689 2.3e-13 78.6 71 54.9
Aqoxy7G04006 Aquilegia oxysepala HOM05D001849 ORTHO05D004689 2.9e-13 78.2 73 56.2
THA.LOC104822664 Tarenaya hassleriana HOM05D001849 ORTHO05D004689 2.9e-13 78.2 73 53.4
A01p39550 Brassica napus HOM05D001849 ORTHO05D004689 8.6e-13 76.6 71 53.5
CSS0050059 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.1e-12 76.3 63 60.3
Sed0016273 Sechium edule HOM05D001849 ORTHO05D004689 1.9e-12 75.5 73 57.5
CsaV3_7G034250 Cucumis sativus L. HOM05D001849 ORTHO05D004689 3.3e-12 74.7 73 54.8
Sp3g12380 Schrenkiella parvula HOM05D001849 ORTHO05D004689 3.3e-12 74.7 71 50.7
A05p35330 Brassica napus HOM05D001849 ORTHO05D004689 5.6e-12 73.9 71 54.9
CSS0004697 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 7.3e-12 73.6 63 58.7
MELO3C024334.2 Cucumis melo HOM05D001849 ORTHO05D004689 9.5e-12 73.2 73 53.4
ECA232G2821 Erigeron canadensis HOM05D001849 ORTHO05D004689 6.1e-11 70.5 71 52.1
ClCG09G001140 Citrullus lanatus HOM05D001849 ORTHO05D004689 1.4e-10 69.3 73 50.7
SEGI_11558 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 2.3e-10 68.6 73 49.3
Zm00001eb165950 Zea mays HOM05D001849 ORTHO05D004689 2.0e-09 65.5 71 47.9
Lsat_1_v5_gn_4_91381 Lactuca sativa HOM05D001849 ORTHO05D004689 3.4e-09 64.7 71 49.3
HanXRQChr09g0277131 Helianthus annuus HOM05D001849 ORTHO05D004689 4.4e-09 64.3 73 52.1
Lsat_1_v5_gn_7_52500 Lactuca sativa HOM05D001849 ORTHO05D004689 3.7e-08 61.2 72 47.2
HPP92_022009 Vanilla planifolia HOM05D001849 ORTHO05D004689 4.9e-08 60.8 72 44.4
SHI25232 Sapria himalayana HOM05D001849 ORTHO05D004689 8.3e-08 60.1 67 43.3
Lsat_1_v5_gn_3_42421 Lactuca sativa HOM05D001849 ORTHO05D004689 3.2e-07 58.2 71 43.7


User provided reference genes

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