Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG402000201 Solanum tuberosum HOM05D001670 ORTHO05D017370 1.0e-235 819.7 408 100.0
PGSC0003DMG400000162 Solanum tuberosum HOM05D001670 ORTHO05D017370 2.8e-129 466.1 384 67.4
PGSC0003DMG400000050 Solanum tuberosum HOM05D001670 ORTHO05D017370 5.8e-66 255.8 220 65.0
CAN.G78.28 Capsicum annuum HOM05D001670 ORTHO05D017370 9.9e-58 228.4 309 48.2
Nitab4.5_0000706g0120 Nicotiana tabacum HOM05D001670 ORTHO05D002980 2.1e-36 157.5 166 54.8
Nitab4.5_0002304g0030 Nicotiana tabacum HOM05D001670 ORTHO05D002980 1.1e-35 155.2 166 54.2
DCAR_015867 Daucus carota HOM05D001670 ORTHO05D002980 6.9e-35 152.5 161 55.3
Solyc01g090780.3 Solanum lycopersicum HOM05D001670 ORTHO05D002980 1.5e-34 151.4 166 54.2
Sopen01g036510 Solanum pennellii HOM05D001670 ORTHO05D002980 4.5e-34 149.8 166 53.6
Aqoxy6G02523 Aquilegia oxysepala HOM05D001670 ORTHO05D002980 2.9e-33 147.1 167 53.9
CAN.G899.12 Capsicum annuum HOM05D001670 ORTHO05D002980 4.9e-33 146.4 166 51.2
Lsat_1_v5_gn_7_10221 Lactuca sativa HOM05D001670 ORTHO05D002980 1.1e-32 145.2 168 51.2
Cc02_g24610 Coffea canephora HOM05D001670 ORTHO05D002980 2.4e-32 144.1 153 55.6
CSS0023490 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 3.2e-32 143.7 167 52.1
CSS0045110 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 3.2e-32 143.7 167 52.1
Dinv44111 Davidia involucrata HOM05D001670 ORTHO05D002980 4.2e-32 143.3 152 53.9
Rhsim01G0135600 Rhododendron simsii HOM05D001670 ORTHO05D002980 4.2e-32 143.3 137 58.4
CiPaw.13G031300 Carya illinoinensis HOM05D001670 ORTHO05D002980 1.2e-31 141.7 152 54.6
TAR374G0935 Trochodendron aralioides HOM05D001670 ORTHO05D002980 1.2e-31 141.7 152 53.3
Lj9C563G7 Lonicera japonica HOM05D001670 ORTHO05D002980 1.6e-31 141.4 164 50.6
Nn6g33938 Nelumbo nucifera HOM05D001670 ORTHO05D002980 2.1e-31 141.0 152 52.6
Cfa011137 Carpinus fangiana HOM05D001670 ORTHO05D002980 2.7e-31 140.6 152 53.3
QL04p035871 Quercus lobata HOM05D001670 ORTHO05D002980 2.7e-31 140.6 152 53.9
TAR375G0686 Trochodendron aralioides HOM05D001670 ORTHO05D002980 2.7e-31 140.6 152 53.3
Prupe.2G135900 Prunus persica HOM05D001670 ORTHO05D002980 3.5e-31 140.2 152 53.3
Sabra02G0111500 Salix brachista HOM05D001670 ORTHO05D002980 3.5e-31 140.2 151 53.0
TWI14G1227 Tripterygium wilfordii HOM05D001670 ORTHO05D002980 3.5e-31 140.2 151 53.0
Lj7C538G19 Lonicera japonica HOM05D001670 ORTHO05D002980 4.6e-31 139.8 139 55.4
Manes.01G270100 Manihot esculenta HOM05D001670 ORTHO05D002980 4.6e-31 139.8 168 50.0
Peaxi162Scf00377g00038 Petunia axillaris HOM05D001670 ORTHO05D002980 4.6e-31 139.8 136 57.4
RcHm_v2.0_Chr1g0348711 Rosa chinensis HOM05D001670 ORTHO05D002980 4.6e-31 139.8 152 52.6
Sed0002470 Sechium edule HOM05D001670 ORTHO05D002980 4.6e-31 139.8 226 40.7
Aqoxy7G00778 Aquilegia oxysepala HOM05D001670 ORTHO05D002980 6.0e-31 139.4 136 58.1
MD07G1112500 Malus domestica HOM05D001670 ORTHO05D002980 6.0e-31 139.4 152 52.6
Potri.014G058800 Populus trichocarpa HOM05D001670 ORTHO05D002980 6.0e-31 139.4 151 53.0
CiPaw.14G024400 Carya illinoinensis HOM05D001670 ORTHO05D002980 7.9e-31 139.0 133 57.9
HanXRQChr04g0123421 Helianthus annuus HOM05D001670 ORTHO05D002980 7.9e-31 139.0 142 55.6
MBI04_g09509_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D002980 1.0e-30 138.7 166 51.2
Manes.05G050200 Manihot esculenta HOM05D001670 ORTHO05D002980 1.0e-30 138.7 121 62.8
Oeu000038.3 Olea europaea HOM05D001670 ORTHO05D002980 1.0e-30 138.7 170 48.8
Duzib133G0195 Durio zibethinus HOM05D001670 ORTHO05D002980 1.3e-30 138.3 172 49.4
CsaV3_3G007410 Cucumis sativus L. HOM05D001670 ORTHO05D002980 2.3e-30 137.5 198 44.4
FvH4_7g10770 Fragaria vesca HOM05D001670 ORTHO05D002980 2.3e-30 137.5 267 36.7
FAN06G0311 Fragaria x ananassa HOM05D001670 ORTHO05D002980 2.3e-30 137.5 267 36.7
FAN06G1683 Fragaria x ananassa HOM05D001670 ORTHO05D002980 2.3e-30 137.5 267 36.7
Glyma.07G108700 Glycine max HOM05D001670 ORTHO05D002980 2.3e-30 137.5 146 53.4
Gohir.A12G095700 Gossypium hirsutum HOM05D001670 ORTHO05D002980 2.3e-30 137.5 151 53.0
COL.COLO4_12469 Corchorus olitorius HOM05D001670 ORTHO05D002980 3.0e-30 137.1 151 53.0
Eucgr.E01609 Eucalyptus grandis HOM05D001670 ORTHO05D002980 3.0e-30 137.1 152 51.3
FAN10G0390 Fragaria x ananassa HOM05D001670 ORTHO05D002980 3.0e-30 137.1 152 52.0
FAN10G2564 Fragaria x ananassa HOM05D001670 ORTHO05D002980 3.0e-30 137.1 152 52.0
MD02G1214300 Malus domestica HOM05D001670 ORTHO05D002980 3.0e-30 137.1 151 52.3
TWI59G0301 Tripterygium wilfordii HOM05D001670 ORTHO05D002980 3.0e-30 137.1 124 60.5
FAN01G0667 Fragaria x ananassa HOM05D001670 ORTHO05D002980 3.9e-30 136.7 152 52.0
FAN03G2300 Fragaria x ananassa HOM05D001670 ORTHO05D002980 3.9e-30 136.7 152 52.0
Thecc.01G385600 Theobroma cacao HOM05D001670 ORTHO05D002980 3.9e-30 136.7 151 52.3
SalBow5G2000 Salvia bowleyana HOM05D001670 ORTHO05D002980 5.1e-30 136.3 137 56.9
VMungo0331G0876 Vigna mungo HOM05D001670 ORTHO05D002980 5.1e-30 136.3 166 49.4
MELO3C005963.2 Cucumis melo HOM05D001670 ORTHO05D002980 6.7e-30 136.0 152 52.6
Glyma.03G118400 Glycine max HOM05D001670 ORTHO05D002980 6.7e-30 136.0 164 49.4
Phvul.010G056800 Phaseolus vulgaris HOM05D001670 ORTHO05D002980 6.7e-30 136.0 166 49.4
Potri.002G143000 Populus trichocarpa HOM05D001670 ORTHO05D002980 6.7e-30 136.0 151 51.7
ClCG05G000260 Citrullus lanatus HOM05D001670 ORTHO05D002980 8.7e-30 135.6 152 52.0
Ciclev10018430m.g Citrus clementina HOM05D001670 ORTHO05D002980 8.7e-30 135.6 151 52.3
Gohir.D12G098300 Gossypium hirsutum HOM05D001670 ORTHO05D002980 8.7e-30 135.6 151 51.7
Gorai.008G107100 Gossypium raimondii HOM05D001670 ORTHO05D002980 8.7e-30 135.6 151 51.7
Atru.chr5.219 Acer truncatum HOM05D001670 ORTHO05D002980 1.1e-29 135.2 132 58.3
Ah.05g173600 Amaranthus hybridus HOM05D001670 ORTHO05D002980 2.5e-29 134.0 193 44.6
Oeu064574.1 Olea europaea HOM05D001670 ORTHO05D002980 2.5e-29 134.0 170 47.6
PSO104G0201 Papaver somniferum HOM05D001670 ORTHO05D002980 2.5e-29 134.0 180 48.3
PSO421G0693 Papaver somniferum HOM05D001670 ORTHO05D002980 2.5e-29 134.0 153 54.2
MSTRG.20721 Avicennia marina HOM05D001670 ORTHO05D002980 3.3e-29 133.7 152 52.0
DCAR_025093 Daucus carota HOM05D001670 ORTHO05D002980 3.3e-29 133.7 168 50.0
Migut.B01578 Erythranthe guttata HOM05D001670 ORTHO05D002980 3.3e-29 133.7 125 58.4
Cpa.g.sc914.1 Carica papaya HOM05D001670 ORTHO05D002980 7.4e-29 132.5 124 58.9
Gohir.D11G082400 Gossypium hirsutum HOM05D001670 ORTHO05D002980 7.4e-29 132.5 121 59.5
Gorai.007G088100 Gossypium raimondii HOM05D001670 ORTHO05D002980 7.4e-29 132.5 121 59.5
Gohir.A11G078000 Gossypium hirsutum HOM05D001670 ORTHO05D002980 9.6e-29 132.1 121 59.5
Lalb_Chr07g0195691 Lupinus albus HOM05D001670 ORTHO05D002980 9.6e-29 132.1 172 47.1
HanXRQChr06g0168951 Helianthus annuus HOM05D001670 ORTHO05D002980 1.3e-28 131.7 154 51.3
SGA_v2.0_scaffold399G50813 Striga asiatica HOM05D001670 ORTHO05D002980 1.3e-28 131.7 124 55.6
GSVIVG01018721001 Vitis vinifera HOM05D001670 ORTHO05D002980 1.3e-28 131.7 152 50.0
arahy.Tifrunner.gnm1.ann1.5NE8AH Arachis hypogaea HOM05D001670 ORTHO05D002980 2.8e-28 130.6 164 49.4
ECA236G0609 Erigeron canadensis HOM05D001670 ORTHO05D002980 2.8e-28 130.6 138 53.6
THA.LOC104814077 Tarenaya hassleriana HOM05D001670 ORTHO05D002980 2.8e-28 130.6 226 40.3
Dinv06565 Davidia involucrata HOM05D001670 ORTHO05D002980 6.2e-28 129.4 152 48.7
CANSAT21G0618 Cannabis sativa HOM05D001670 ORTHO05D002980 8.1e-28 129.0 125 56.0
CDE09G0971 Ceratophyllum demersum HOM05D001670 ORTHO05D002980 8.1e-28 129.0 152 48.0
arahy.Tifrunner.gnm1.ann1.1V1Y36 Arachis hypogaea HOM05D001670 ORTHO05D002980 1.4e-27 128.3 157 50.3
Sc13g0006690 Simmondsia chinensis HOM05D001670 ORTHO05D002980 1.4e-27 128.3 149 49.0
GSVIVG01018178001 Vitis vinifera HOM05D001670 ORTHO05D002980 1.4e-27 128.3 124 54.0
Lj3g0005567 Lotus japonicus HOM05D001670 ORTHO05D002980 1.8e-27 127.9 170 46.5
CDE11G0646 Ceratophyllum demersum HOM05D001670 ORTHO05D017370 2.4e-27 127.5 152 47.4
Oeu061519.1 Olea europaea HOM05D001670 ORTHO05D002980 5.3e-27 126.3 153 49.7
SGA_v2.0_scaffold153G36957 Striga asiatica HOM05D001670 ORTHO05D002980 6.9e-27 125.9 120 55.8
Lalb_Chr13g0290371 Lupinus albus HOM05D001670 ORTHO05D002980 1.2e-26 125.2 125 56.0
PGR042G0136 Punica granatum HOM05D001670 ORTHO05D002980 1.2e-26 125.2 151 49.0
PSO170G5961 Papaver somniferum HOM05D001670 ORTHO05D002980 2.0e-26 124.4 126 57.1
TAR629G1646 Trochodendron aralioides HOM05D001670 ORTHO05D002980 2.0e-26 124.4 141 49.6
vmacro21039 Vaccinium macrocarpon HOM05D001670 ORTHO05D002980 2.0e-26 124.4 220 41.4
Ca_23116_v3 Cicer arietinum L. HOM05D001670 ORTHO05D002980 2.6e-26 124.0 175 44.0
PSO017G3667 Papaver somniferum HOM05D001670 ORTHO05D002980 3.4e-26 123.6 126 57.1
HPP92_007431 Vanilla planifolia HOM05D001670 ORTHO05D002980 4.5e-26 123.2 123 55.3
ATR0317G075 Amborella trichopoda HOM05D001670 ORTHO05D002980 5.8e-26 122.9 133 51.9
Mapoly0037s0011 Marchantia polymorpha HOM05D001670 ORTHO05D002980 5.8e-26 122.9 122 54.1
Hund27384 Selenicereus undatus HOM05D001670 ORTHO05D002980 1.7e-25 121.3 135 52.6
Atru.chr1.760 Acer truncatum HOM05D001670 ORTHO05D002980 2.9e-25 120.6 124 54.8
Medtr8g005820 Medicago truncatula HOM05D001670 ORTHO05D002980 3.8e-25 120.2 124 51.6
Psat4g209400 Pisum sativum HOM05D001670 ORTHO05D002980 3.8e-25 120.2 175 42.3
TPR.G28734 Trifolium pratense HOM05D001670 ORTHO05D002980 1.1e-24 118.6 124 53.2
Zm00001eb000340 Zea mays HOM05D001670 ORTHO05D002980 1.4e-24 118.2 150 46.7
Zm00001eb404410 Zea mays HOM05D001670 ORTHO05D002980 1.4e-24 118.2 151 47.7
EL10Ac1g00822 Beta vulgaris HOM05D001670 ORTHO05D002980 2.5e-24 117.5 136 51.5
Duzib068G1107 Durio zibethinus HOM05D001670 ORTHO05D002980 2.7e-23 114.0 123 53.7
BcaB03g13629 Brassica carinata HOM05D001670 ORTHO05D002980 3.5e-23 113.6 124 50.8
A07p21180 Brassica napus HOM05D001670 ORTHO05D002980 3.5e-23 113.6 121 52.1
A10p00140 Brassica napus HOM05D001670 ORTHO05D002980 3.5e-23 113.6 124 50.8
C05p00130 Brassica napus HOM05D001670 ORTHO05D002980 3.5e-23 113.6 124 50.8
BolC5t28803H Brassica oleracea HOM05D001670 ORTHO05D002980 3.5e-23 113.6 124 50.8
BraA07t29805Z Brassica rapa HOM05D001670 ORTHO05D002980 3.5e-23 113.6 121 52.1
BraA10t42293Z Brassica rapa HOM05D001670 ORTHO05D002980 3.5e-23 113.6 124 50.8
Os10g0556700 Oryza sativa ssp. japonica HOM05D001670 ORTHO05D002980 3.5e-23 113.6 120 52.5
BcaC08g44594 Brassica carinata HOM05D001670 ORTHO05D002980 4.6e-23 113.2 121 51.2
BcaNung05012 Brassica carinata HOM05D001670 ORTHO05D002980 4.6e-23 113.2 121 51.2
A09p69240 Brassica napus HOM05D001670 ORTHO05D002980 4.6e-23 113.2 121 51.2
C06p20660 Brassica napus HOM05D001670 ORTHO05D002980 4.6e-23 113.2 121 51.2
BolC6t37249H Brassica oleracea HOM05D001670 ORTHO05D002980 4.6e-23 113.2 121 51.2
BolC8t52916H Brassica oleracea HOM05D001670 ORTHO05D002980 4.6e-23 113.2 121 51.2
Thhalv10006521m.g Eutrema salsugineum HOM05D001670 ORTHO05D002980 4.6e-23 113.2 121 51.2
BcaB02g07859 Brassica carinata HOM05D001670 ORTHO05D002980 6.0e-23 112.8 121 52.1
BcaC07g42342 Brassica carinata HOM05D001670 ORTHO05D002980 6.0e-23 112.8 121 51.2
Lsat_1_v5_gn_4_44300 Lactuca sativa HOM05D001670 ORTHO05D017370 6.0e-23 112.8 248 35.1
Aa31LG1G11410 Aethionema arabicum HOM05D001670 ORTHO05D002980 7.9e-23 112.5 121 52.9
AL1G10200 Arabidopsis lyrata HOM05D001670 ORTHO05D002980 7.9e-23 112.5 121 51.2
AT1G02080 Arabidopsis thaliana HOM05D001670 ORTHO05D002980 7.9e-23 112.5 121 51.2
BraA09t42277Z Brassica rapa HOM05D001670 ORTHO05D002980 7.9e-23 112.5 121 51.2
Carub.0001s0015 Capsella rubella HOM05D001670 ORTHO05D002980 7.9e-23 112.5 121 51.2
Sp1g00220 Schrenkiella parvula HOM05D001670 ORTHO05D002980 1.0e-22 112.1 121 49.6
THA.LOC104801485 Tarenaya hassleriana HOM05D001670 ORTHO05D002980 1.0e-22 112.1 118 55.1
CARHR000250 Cardamine hirsuta HOM05D001670 ORTHO05D002980 1.3e-22 111.7 121 51.2
Actinidia24999 Actinidia chinensis HOM05D001670 ORTHO05D002980 3.0e-22 110.5 124 50.0
Hund17061 Selenicereus undatus HOM05D001670 ORTHO05D002980 3.9e-22 110.2 160 44.4
SMO340G0305 Selaginella moellendorffii HOM05D001670 ORTHO05D002980 1.5e-21 108.2 121 47.9
Thecc.03G154200 Theobroma cacao HOM05D001670 ORTHO05D002980 4.3e-21 106.7 126 49.2
Lsat_1_v5_gn_5_55541 Lactuca sativa HOM05D000041 ORTHO05D000452 5.7e-21 106.3 149 47.0
Aqoxy4G01930 Aquilegia oxysepala HOM05D001670 ORTHO05D017370 9.6e-21 105.5 98 58.2
Actinidia12669 Actinidia chinensis HOM05D001670 ORTHO05D002980 4.8e-20 103.2 99 57.6
SHI13578 Sapria himalayana HOM05D001670 ORTHO05D002980 8.2e-20 102.4 136 44.9
Duzib268G0141 Durio zibethinus HOM05D001670 ORTHO05D002980 1.1e-19 102.1 138 45.7
MBI18_g42384_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D017370 4.1e-19 100.1 87 60.9
CBR_g37673 Chara braunii HOM05D001670 ORTHO05D002980 6.9e-19 99.4 111 50.5
Pp3c21_18770 Physcomitrium patens HOM05D001670 ORTHO05D002980 4.5e-18 96.7 119 46.2
C08p54060 Brassica napus HOM05D001670 ORTHO05D002980 5.8e-18 96.3 135 43.7
Lsat_1_v5_gn_4_44320 Lactuca sativa HOM05D001670 ORTHO05D002980 1.3e-17 95.1 96 49.0
Cre14.g632950 Chlamydomonas reinhardtii HOM05D001670 ORTHO05D002980 2.9e-17 94.0 131 43.5
Rhsim03G0166300 Rhododendron simsii HOM05D001670 ORTHO05D002980 4.6e-15 86.7 172 36.6
PRCOL_00002164 Prasinoderma coloniale HOM05D001670 ORTHO05D002980 1.8e-14 84.7 114 39.5
MCO11G155 Micromonas commoda HOM05D001670 ORTHO05D002980 3.0e-14 84.0 123 39.0
Pp3c5_6540 Physcomitrium patens HOM05D001670 ORTHO05D002980 1.9e-13 81.3 164 33.5
ECA236G0282 Erigeron canadensis HOM05D007737 ORTHO05D009754 4.3e-13 80.1 80 57.5
Cfa026075 Carpinus fangiana HOM05D001670 ORTHO05D002980 3.2e-08 63.9 101 39.6
PGSC0003DMG400000049 Solanum tuberosum HOM05D001670 ORTHO05D002980 1.4e-06 58.5 38 68.4
PGSC0003DMG401000201 Solanum tuberosum HOM05D001670 ORTHO05D002980 1.4e-06 58.5 38 68.4
Haze_02723 Corylus avellana HOM05D001670 ORTHO05D002980 3.9e-06 57.0 56 55.4


User provided reference genes

Program Settings