Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401027913 Solanum tuberosum HOM05D006124 ORTHO05D007854 2.7e-135 485.3 246 100.0
Solyc04g054700.3 Solanum lycopersicum HOM05D006124 ORTHO05D007854 4.9e-129 464.5 241 97.9
Nitab4.5_0000214g0090 Nicotiana tabacum HOM05D006124 ORTHO05D007854 4.8e-124 448.0 242 94.2
Nitab4.5_0004386g0010 Nicotiana tabacum HOM05D006124 ORTHO05D007854 2.6e-122 442.2 243 93.0
CAN.G219.5 Capsicum annuum HOM05D006124 ORTHO05D007854 9.3e-120 433.7 242 93.0
Peaxi162Scf00876g00022 Petunia axillaris HOM05D006124 ORTHO05D007854 2.0e-114 416.0 242 88.8
Peaxi162Scf00272g00827 Petunia axillaris HOM05D006124 ORTHO05D007854 3.4e-114 415.2 242 88.4
SalBow3G1513 Salvia bowleyana HOM05D006124 ORTHO05D007854 3.3e-109 398.7 239 84.5
Oeu035057.1 Olea europaea HOM05D006124 ORTHO05D007854 4.5e-106 388.3 242 82.6
Cc01_g01430 Coffea canephora HOM05D006124 ORTHO05D007854 1.7e-105 386.3 246 80.9
Migut.D02195 Erythranthe guttata HOM05D006124 ORTHO05D007854 2.9e-105 385.6 240 81.7
MSTRG.21138 Avicennia marina HOM05D006124 ORTHO05D007854 4.2e-104 381.7 242 81.8
Rhsim08G0043400 Rhododendron simsii HOM05D006124 ORTHO05D007854 3.0e-102 375.6 248 77.4
Hma1.2p1_0002F.1_g001970 Hydrangea macrophylla HOM05D006124 ORTHO05D007854 5.1e-102 374.8 249 77.5
SGA_v2.0_scaffold61G21160 Striga asiatica HOM05D006124 ORTHO05D007854 1.1e-101 373.6 244 79.1
Ciclev10005033m.g Citrus clementina HOM05D006124 ORTHO05D007854 2.0e-101 372.9 248 77.8
Actinidia07118 Actinidia chinensis HOM05D006124 ORTHO05D007854 5.7e-101 371.3 228 80.3
vmacro03179 Vaccinium macrocarpon HOM05D006124 ORTHO05D007854 3.7e-100 368.6 248 76.2
CSS0017090 Camellia sinensis var. sinensis HOM05D006124 ORTHO05D007854 4.8e-100 368.2 251 75.3
DCAR_015555 Daucus carota HOM05D006124 ORTHO05D007854 6.3e-100 367.9 222 81.1
Dinv30520 Davidia involucrata HOM05D006124 ORTHO05D007854 8.2e-100 367.5 250 76.8
Haze_08019 Corylus avellana HOM05D006124 ORTHO05D007854 1.4e-99 366.7 250 74.4
FAN21G3497 Fragaria x ananassa HOM05D006124 ORTHO05D007854 1.4e-99 366.7 243 75.7
RcHm_v2.0_Chr5g0060301 Rosa chinensis HOM05D006124 ORTHO05D007854 1.4e-99 366.7 243 75.3
QL01p023235 Quercus lobata HOM05D006124 ORTHO05D007854 1.8e-99 366.3 247 76.1
FAN25G1144 Fragaria x ananassa HOM05D006124 ORTHO05D007854 2.4e-99 365.9 243 75.7
PGR119G0371 Punica granatum HOM05D006124 ORTHO05D007854 2.4e-99 365.9 247 75.3
Sed0018571 Sechium edule HOM05D006124 ORTHO05D007854 3.1e-99 365.5 248 74.6
Cfa012640 Carpinus fangiana HOM05D006124 ORTHO05D007854 9.1e-99 364.0 247 75.3
MELO3C005421.2 Cucumis melo HOM05D006124 ORTHO05D007854 1.2e-98 363.6 246 74.8
FvH4_3g32970 Fragaria vesca HOM05D006124 ORTHO05D007854 1.2e-98 363.6 243 74.9
FAN11G0357 Fragaria x ananassa HOM05D006124 ORTHO05D007854 1.2e-98 363.6 243 74.9
CsaV3_5G005370 Cucumis sativus L. HOM05D006124 ORTHO05D007854 2.6e-98 362.5 246 74.4
MD03G1112800 Malus domestica HOM05D006124 ORTHO05D007854 2.6e-98 362.5 244 75.0
Aqoxy5G00340 Aquilegia oxysepala HOM05D006124 ORTHO05D007854 3.4e-98 362.1 249 75.9
unitig_21.g20322 Utricularia gibba HOM05D006124 ORTHO05D007854 3.4e-98 362.1 255 72.9
ClCG01G004970 Citrullus lanatus HOM05D006124 ORTHO05D007854 4.5e-98 361.7 248 75.4
Ciclev10011800m.g Citrus clementina HOM05D006124 ORTHO05D007854 5.9e-98 361.3 250 76.0
GSVIVG01025154001 Vitis vinifera HOM05D006124 ORTHO05D007854 5.9e-98 361.3 226 78.8
Atru.chr3.3681 Acer truncatum HOM05D006124 ORTHO05D007854 1.0e-97 360.5 250 73.6
Cpa.g.sc139.77 Carica papaya HOM05D006124 ORTHO05D007854 1.0e-97 360.5 249 76.7
CANSAT54G1697 Cannabis sativa HOM05D006124 ORTHO05D007854 1.7e-97 359.8 244 74.2
Duzib150G0641 Durio zibethinus HOM05D006124 ORTHO05D007854 2.2e-97 359.4 223 78.9
Nn7g36111 Nelumbo nucifera HOM05D006124 ORTHO05D007854 2.2e-97 359.4 226 78.8
HanXRQChr02g0055911 Helianthus annuus HOM05D006124 ORTHO05D007854 3.8e-97 358.6 246 74.8
AUR62018404 Chenopodium quinoa HOM05D006124 ORTHO05D007854 5.0e-97 358.2 222 78.4
AUR62021039 Chenopodium quinoa HOM05D006124 ORTHO05D007854 6.5e-97 357.8 222 77.9
Peaxi162Scf00106g02220 Petunia axillaris HOM05D006124 ORTHO05D007854 8.5e-97 357.5 279 71.3
Lalb_Chr22g0357551 Lupinus albus HOM05D006124 ORTHO05D007854 1.1e-96 357.1 235 74.5
MBI18_g17017_MAGBIO Magnolia biondii HOM05D006124 ORTHO05D007854 1.4e-96 356.7 227 76.7
Prupe.6G097100 Prunus persica HOM05D006124 ORTHO05D007854 1.9e-96 356.3 244 74.2
Thecc.09G259100 Theobroma cacao HOM05D006124 ORTHO05D007854 1.9e-96 356.3 223 78.9
Glyma.11G073900 Glycine max HOM05D006124 ORTHO05D007854 2.5e-96 355.9 245 72.2
COL.COLO4_05187 Corchorus olitorius HOM05D006124 ORTHO05D007854 4.2e-96 355.1 223 78.5
Eucgr.J00945 Eucalyptus grandis HOM05D006124 ORTHO05D007854 4.2e-96 355.1 237 76.4
THA.LOC104801004 Tarenaya hassleriana HOM05D006124 ORTHO05D007854 4.2e-96 355.1 249 73.5
CDE04G2680 Ceratophyllum demersum HOM05D006124 ORTHO05D007854 7.2e-96 354.4 226 76.5
Glyma.19G129000 Glycine max HOM05D006124 ORTHO05D007854 7.2e-96 354.4 245 72.2
Lj1g0025688 Lotus japonicus HOM05D006124 ORTHO05D007854 7.2e-96 354.4 236 73.7
Lsat_1_v5_gn_6_46340 Lactuca sativa HOM05D006124 ORTHO05D007854 9.4e-96 354.0 228 77.6
Lalb_Chr14g0365721 Lupinus albus HOM05D006124 ORTHO05D007854 9.4e-96 354.0 235 73.6
Manes.04G024500 Manihot esculenta HOM05D006124 ORTHO05D007854 9.4e-96 354.0 246 73.6
EL10Ac5g12347 Beta vulgaris HOM05D006124 ORTHO05D007854 2.1e-95 352.8 254 70.5
Ca_08379_v3 Cicer arietinum L. HOM05D006124 ORTHO05D007854 3.6e-95 352.1 236 74.2
Thhalv10007730m.g Eutrema salsugineum HOM05D006124 ORTHO05D007854 3.6e-95 352.1 247 72.5
ECA233G1948 Erigeron canadensis HOM05D006124 ORTHO05D007854 4.7e-95 351.7 228 76.8
CiPaw.05G171100 Carya illinoinensis HOM05D006124 ORTHO05D007854 7.9e-95 350.9 225 77.8
AT1G05055 Arabidopsis thaliana HOM05D006124 ORTHO05D007854 1.4e-94 350.1 247 72.5
arahy.Tifrunner.gnm1.ann1.63AZS3 Arachis hypogaea HOM05D006124 ORTHO05D007854 1.8e-94 349.7 247 72.5
Sp1g03920 Schrenkiella parvula HOM05D006124 ORTHO05D007854 1.8e-94 349.7 249 72.7
Gohir.D09G102900 Gossypium hirsutum HOM05D006124 ORTHO05D007854 3.0e-94 349.0 234 73.5
arahy.Tifrunner.gnm1.ann1.M1WJK6 Arachis hypogaea HOM05D006124 ORTHO05D007854 5.1e-94 348.2 247 72.5
TPR.G16093 Trifolium pratense HOM05D006124 ORTHO05D007854 6.7e-94 347.8 236 73.3
CARHR004500 Cardamine hirsuta HOM05D006124 ORTHO05D007854 8.8e-94 347.4 248 71.4
Gohir.A09G106200 Gossypium hirsutum HOM05D006124 ORTHO05D007854 8.8e-94 347.4 221 76.5
Gorai.006G120700 Gossypium raimondii HOM05D006124 ORTHO05D007854 8.8e-94 347.4 221 76.5
Carub.0001s0430 Capsella rubella HOM05D006124 ORTHO05D007854 1.5e-93 346.7 247 71.3
Medtr7g089440 Medicago truncatula HOM05D006124 ORTHO05D007854 1.5e-93 346.7 236 72.9
A08p36590 Brassica napus HOM05D006124 ORTHO05D007854 2.6e-93 345.9 248 71.4
C08p01730 Brassica napus HOM05D006124 ORTHO05D007854 2.6e-93 345.9 248 71.4
BolC8t46973H Brassica oleracea HOM05D006124 ORTHO05D007854 2.6e-93 345.9 248 71.4
BraA08t35561Z Brassica rapa HOM05D006124 ORTHO05D007854 2.6e-93 345.9 248 71.4
VMungo1383G3228 Vigna mungo HOM05D006124 ORTHO05D007854 2.6e-93 345.9 245 70.2
CiPaw.13G108300 Carya illinoinensis HOM05D006124 ORTHO05D007854 3.3e-93 345.5 248 73.0
Aa31LG1G19730 Aethionema arabicum HOM05D006124 ORTHO05D007854 5.7e-93 344.7 248 73.0
AL1G14800 Arabidopsis lyrata HOM05D006124 ORTHO05D007854 7.4e-93 344.4 247 71.7
BcaB03g13459 Brassica carinata HOM05D006124 ORTHO05D007854 9.7e-93 344.0 248 71.0
TWI39G0794 Tripterygium wilfordii HOM05D006124 ORTHO05D007854 4.8e-92 341.7 248 71.0
Zm00001eb077790 Zea mays HOM05D006124 ORTHO05D007854 3.1e-91 339.0 231 74.9
PSO541G0641 Papaver somniferum HOM05D006124 ORTHO05D007854 5.9e-90 334.7 247 70.0
PSO384G4530 Papaver somniferum HOM05D006124 ORTHO05D007854 2.9e-89 332.4 247 69.6
Os04g0508900 Oryza sativa ssp. japonica HOM05D006124 ORTHO05D007854 2.5e-88 329.3 227 71.8
PSO339G3674 Papaver somniferum HOM05D006124 ORTHO05D007854 2.5e-88 329.3 247 69.6
Potri.004G113700 Populus trichocarpa HOM05D006124 ORTHO05D007854 9.4e-88 327.4 224 72.3
Sabra04G0071700 Salix brachista HOM05D006124 ORTHO05D007854 4.7e-87 325.1 245 69.4
SEGI_32950 Sequoiadendron giganteum HOM05D006124 ORTHO05D007854 1.7e-84 316.6 245 65.3
Sopen04g024450 Solanum pennellii HOM05D006124 ORTHO05D007854 7.2e-80 301.2 150 98.0
Solyc08g028693.1 Solanum lycopersicum HOM05D006124 ORTHO05D007854 1.6e-79 300.1 150 97.3
Pp3c24_6530 Physcomitrium patens HOM05D006124 ORTHO05D007854 1.4e-75 287.0 234 60.3
SMO141G0040 Selaginella moellendorffii HOM05D006124 ORTHO05D007854 3.1e-75 285.8 228 60.1
Mapoly0005s0033 Marchantia polymorpha HOM05D006124 ORTHO05D007854 4.5e-74 282.0 245 58.8
Peaxi162Scf00876g00023 Petunia axillaris HOM05D006124 ORTHO05D007854 1.4e-70 270.4 166 81.9
CBR_g21234 Chara braunii HOM05D006124 ORTHO05D007854 1.5e-69 266.9 237 56.5
TAR369G0666 Trochodendron aralioides HOM05D006124 ORTHO05D007854 2.2e-68 263.1 160 77.5
Lj1C682G4 Lonicera japonica HOM05D006124 ORTHO05D007854 3.7e-68 262.3 150 84.0
Ah.13g077240 Amaranthus hybridus HOM05D006124 ORTHO05D007854 5.6e-64 248.4 151 76.8
Sc06g0010480 Simmondsia chinensis HOM05D006124 ORTHO05D007854 2.0e-61 240.0 150 75.3
Psat3g079640 Pisum sativum HOM05D006124 ORTHO05D007854 4.9e-60 235.3 143 79.0
Phvul.001G121400 Phaseolus vulgaris HOM05D006124 ORTHO05D007854 6.4e-60 235.0 143 76.2
ATR0580G285 Amborella trichopoda HOM05D006124 ORTHO05D007854 1.1e-59 234.2 150 73.3
MD11G1132000 Malus domestica HOM05D006124 ORTHO05D007854 3.2e-59 232.6 141 79.4
Cre03.g179550 Chlamydomonas reinhardtii HOM05D006124 ORTHO05D007854 1.9e-56 223.4 235 47.2
Lj1A187G25 Lonicera japonica HOM05D006124 ORTHO05D007854 8.6e-49 198.0 123 77.2
CAN.G1136.1 Capsicum annuum HOM05D006124 ORTHO05D007854 1.2e-47 194.1 115 82.6
MCO11G183 Micromonas commoda HOM05D006124 ORTHO05D007854 1.6e-47 193.7 228 43.4
AagrBONN_evm.TU.Sc2ySwM_344.4431 Anthoceros agrestis HOM05D006124 ORTHO05D007854 5.4e-43 178.7 147 55.8
PRCOL_00001395 Prasinoderma coloniale HOM05D006124 ORTHO05D007854 2.4e-35 153.3 178 42.7
BolC5t29103H Brassica oleracea HOM05D006124 ORTHO05D007854 3.2e-35 152.9 97 75.3
Haze_26481 Corylus avellana HOM05D006124 ORTHO05D007854 5.4e-35 152.1 230 37.0
Cfa026643 Carpinus fangiana HOM05D006124 ORTHO05D007854 7.1e-35 151.8 239 37.2
Peaxi162Scf00876g00016 Petunia axillaris HOM05D006124 ORTHO05D007854 1.1e-30 137.9 88 87.5
BcaC09g51580 Brassica carinata HOM05D006124 ORTHO05D007854 3.2e-19 99.8 93 62.4
ECA247G2464 Erigeron canadensis HOM05D011992 ORTHO05D008321 1.2e-13 81.3 88 50.0
Psat6g235520 Pisum sativum HOM05D006124 ORTHO05D001516 9.9e-13 78.2 53 66.0
HPP92_015147 Vanilla planifolia HOM05D006124 ORTHO05D007854 6.4e-12 75.5 59 67.8
RcHm_v2.0_Chr5g0060231 Rosa chinensis HOM05D006124 ORTHO05D007854 8.7e-09 65.1 54 57.4
ECA233G1860 Erigeron canadensis HOM05D000013 ORTHO05D000011 1.9e-08 63.9 88 44.3


User provided reference genes

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