Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401024649 Solanum tuberosum HOM05D000113 ORTHO05D012125 4.4e-69 264.6 144 100.0
PGSC0003DMG402024649 Solanum tuberosum HOM05D000113 ORTHO05D002571 7.0e-67 257.3 139 100.0
Solyc03g115400.2 Solanum lycopersicum HOM05D000113 ORTHO05D012125 1.5e-64 249.6 144 94.4
Sopen03g034400 Solanum pennellii HOM05D000113 ORTHO05D002571 1.2e-63 246.5 142 93.0
CAN.G479.26 Capsicum annuum HOM05D000113 ORTHO05D012125 1.0e-62 243.4 144 91.7
Nitab4.5_0001410g0130 Nicotiana tabacum HOM05D000113 ORTHO05D002571 2.9e-44 182.2 153 71.9
Nitab4.5_0004284g0070 Nicotiana tabacum HOM05D000113 ORTHO05D002571 1.7e-36 156.4 101 84.2
Haze_07691 Corylus avellana HOM05D000113 ORTHO05D002571 2.7e-34 149.1 149 59.1
Cc04_g15030 Coffea canephora HOM05D000113 ORTHO05D012125 7.8e-34 147.5 145 58.6
Cfa019308 Carpinus fangiana HOM05D000113 ORTHO05D002571 1.3e-33 146.7 149 57.0
Migut.D01678 Erythranthe guttata HOM05D000113 ORTHO05D002571 1.1e-32 143.7 134 59.7
SGA_v2.0_scaffold1221G53867 Striga asiatica HOM05D000113 ORTHO05D012125 1.1e-32 143.7 139 57.6
ECA232G2775 Erigeron canadensis HOM05D000113 ORTHO05D002571 2.5e-32 142.5 143 55.2
unitig_8.g2956 Utricularia gibba HOM05D000113 ORTHO05D002571 7.3e-32 141.0 139 59.0
Dinv38794 Davidia involucrata HOM05D000113 ORTHO05D002571 4.7e-31 138.3 133 57.9
Nitab4.5_0001127g0130 Nicotiana tabacum HOM05D000113 ORTHO05D012125 3.1e-30 135.6 111 73.9
Eucgr.K02504 Eucalyptus grandis HOM05D000113 ORTHO05D012125 4.4e-29 131.7 156 52.6
TAR374G0746 Trochodendron aralioides HOM05D000113 ORTHO05D002571 1.7e-28 129.8 135 54.1
Oeu008272.2 Olea europaea HOM05D000113 ORTHO05D002571 2.2e-28 129.4 101 66.3
TWI73G0006 Tripterygium wilfordii HOM05D000113 ORTHO05D002571 2.2e-28 129.4 144 48.6
vmacro16510 Vaccinium macrocarpon HOM05D000113 ORTHO05D002571 8.4e-28 127.5 128 56.2
PSO063G4203 Papaver somniferum HOM05D000113 ORTHO05D002571 3.2e-27 125.6 139 46.8
Gohir.A12G181200 Gossypium hirsutum HOM05D000113 ORTHO05D002571 1.6e-26 123.2 136 51.5
Hma1.2p1_0060F.1_g033270 Hydrangea macrophylla HOM05D000113 ORTHO05D002571 1.6e-26 123.2 101 64.4
AT1G32490 Arabidopsis thaliana HOM05D000113 ORTHO05D002571 2.7e-26 122.5 140 52.1
PGR044G1093 Punica granatum HOM05D000113 ORTHO05D002571 2.7e-26 122.5 132 56.8
MELO3C017216.2 Cucumis melo HOM05D000113 ORTHO05D002571 3.5e-26 122.1 133 52.6
SalBow7G4123 Salvia bowleyana HOM05D000113 ORTHO05D002571 3.5e-26 122.1 94 70.2
GSVIVG01007911001 Vitis vinifera HOM05D000113 ORTHO05D002571 3.5e-26 122.1 106 63.2
CsaV3_1G002800 Cucumis sativus L. HOM05D000113 ORTHO05D002571 4.6e-26 121.7 136 52.2
Glyma.01G040900 Glycine max HOM05D000113 ORTHO05D002571 4.6e-26 121.7 135 52.6
Gohir.D12G183900 Gossypium hirsutum HOM05D000113 ORTHO05D002571 4.6e-26 121.7 140 49.3
Thecc.03G097900 Theobroma cacao HOM05D000113 ORTHO05D002571 4.6e-26 121.7 106 63.2
Aa31LG7G3740 Aethionema arabicum HOM05D000113 ORTHO05D002571 6.0e-26 121.3 132 56.8
AL4G31370 Arabidopsis lyrata HOM05D000113 ORTHO05D002571 6.0e-26 121.3 140 55.0
Manes.13G073000 Manihot esculenta HOM05D000113 ORTHO05D002571 6.0e-26 121.3 148 48.0
DCAR_021511 Daucus carota HOM05D000113 ORTHO05D002571 7.8e-26 120.9 134 47.8
Gorai.008G197200 Gossypium raimondii HOM05D000113 ORTHO05D002571 7.8e-26 120.9 137 49.6
PSO013G0399 Papaver somniferum HOM05D000113 ORTHO05D012125 7.8e-26 120.9 139 48.2
Aa31LG7G3630 Aethionema arabicum HOM05D000113 ORTHO05D002571 1.7e-25 119.8 129 55.0
Rhsim12G0152100 Rhododendron simsii HOM05D000113 ORTHO05D002571 3.0e-25 119.0 101 62.4
AL1G46740 Arabidopsis lyrata HOM05D000113 ORTHO05D002571 3.9e-25 118.6 142 50.7
PSO409G0035 Papaver somniferum HOM05D000113 ORTHO05D002571 3.9e-25 118.6 139 48.2
Duzib205G1857 Durio zibethinus HOM05D000113 ORTHO05D002571 8.7e-25 117.5 142 49.3
RcHm_v2.0_Chr7g0182681 Rosa chinensis HOM05D000113 ORTHO05D002571 8.7e-25 117.5 103 61.2
AT2G35340 Arabidopsis thaliana HOM05D000113 ORTHO05D002571 1.5e-24 116.7 133 55.6
Prupe.6G159800 Prunus persica HOM05D000113 ORTHO05D002571 1.5e-24 116.7 127 54.3
Sed0009402 Sechium edule HOM05D000113 ORTHO05D002571 1.5e-24 116.7 124 53.2
Actinidia35027 Actinidia chinensis HOM05D000113 ORTHO05D002571 1.9e-24 116.3 110 55.5
Lalb_Chr13g0294241 Lupinus albus HOM05D000113 ORTHO05D002571 1.9e-24 116.3 147 47.6
EL10Ac3g06248 Beta vulgaris HOM05D000113 ORTHO05D002571 2.5e-24 115.9 103 62.1
Aqoxy3G03585 Aquilegia oxysepala HOM05D000113 ORTHO05D002571 3.3e-24 115.5 138 51.4
CiPaw.11G050600 Carya illinoinensis HOM05D000113 ORTHO05D002571 3.3e-24 115.5 103 62.1
Prupe.5G201700 Prunus persica HOM05D000113 ORTHO05D002571 3.3e-24 115.5 126 54.0
FAN18G0690 Fragaria x ananassa HOM05D000113 ORTHO05D002571 4.3e-24 115.2 103 61.2
CSS0000469 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D002571 5.6e-24 114.8 98 61.2
Lj5A105G62 Lonicera japonica HOM05D000113 ORTHO05D012125 5.6e-24 114.8 116 56.9
FvH4_5g14240 Fragaria vesca HOM05D000113 ORTHO05D002571 9.6e-24 114.0 103 61.2
Carub.0001s3090 Capsella rubella HOM05D000113 ORTHO05D002571 2.1e-23 112.8 140 50.0
HanXRQChr10g0308651 Helianthus annuus HOM05D000113 ORTHO05D002571 3.6e-23 112.1 104 58.7
Sc10g0009750 Simmondsia chinensis HOM05D000113 ORTHO05D002571 3.6e-23 112.1 127 54.3
THA.LOC104812747 Tarenaya hassleriana HOM05D000113 ORTHO05D002571 3.6e-23 112.1 102 61.8
FAN08G1023 Fragaria x ananassa HOM05D000113 ORTHO05D002571 4.7e-23 111.7 103 59.2
CARHR031940 Cardamine hirsuta HOM05D000113 ORTHO05D002571 6.2e-23 111.3 140 48.6
AUR62029968 Chenopodium quinoa HOM05D000113 ORTHO05D012125 6.2e-23 111.3 122 54.9
ClCG06G015750 Citrullus lanatus HOM05D000113 ORTHO05D002571 1.1e-22 110.5 103 57.3
Thhalv10017881m.g Eutrema salsugineum HOM05D000113 ORTHO05D002571 1.1e-22 110.5 121 57.0
Lj1g0013131 Lotus japonicus HOM05D000113 ORTHO05D002571 1.4e-22 110.2 142 47.2
HPP92_010044 Vanilla planifolia HOM05D000113 ORTHO05D002571 1.4e-22 110.2 138 46.4
Glyma.06G201700 Glycine max HOM05D000113 ORTHO05D002571 4.0e-22 108.6 103 60.2
Sabra15G0006800 Salix brachista HOM05D000113 ORTHO05D002571 4.0e-22 108.6 134 51.5
Sp1g28410 Schrenkiella parvula HOM05D000113 ORTHO05D002571 4.0e-22 108.6 140 48.6
Peaxi162Scf00201g00132 Petunia axillaris HOM05D000113 ORTHO05D002571 5.2e-22 108.2 69 85.5
COL.COLO4_22215 Corchorus olitorius HOM05D000113 ORTHO05D002571 9.0e-22 107.5 133 47.4
RhsimUnG0148700 Rhododendron simsii HOM05D000113 ORTHO05D002571 1.2e-21 107.1 136 50.0
Potri.015G008700 Populus trichocarpa HOM05D000113 ORTHO05D002571 1.5e-21 106.7 103 59.2
Lj6g0016007 Lotus japonicus HOM05D000113 ORTHO05D002571 2.0e-21 106.3 101 59.4
Aa31LG2G13460 Aethionema arabicum HOM05D000113 ORTHO05D002571 4.4e-21 105.1 103 59.2
SEGI_02990 Sequoiadendron giganteum HOM05D000113 ORTHO05D002571 4.4e-21 105.1 128 47.7
arahy.Tifrunner.gnm1.ann1.LUB4JJ Arachis hypogaea HOM05D000113 ORTHO05D002571 5.8e-21 104.8 103 59.2
Ca_13800_v3 Cicer arietinum L. HOM05D000113 ORTHO05D002571 5.8e-21 104.8 102 56.9
Nn2g13470 Nelumbo nucifera HOM05D000113 ORTHO05D002571 5.8e-21 104.8 103 57.3
Phvul.009G193400 Phaseolus vulgaris HOM05D000113 ORTHO05D002571 5.8e-21 104.8 97 58.8
Dinv22270 Davidia involucrata HOM05D000113 ORTHO05D002571 1.7e-20 103.2 96 60.4
Medtr3g023880 Medicago truncatula HOM05D000113 ORTHO05D002571 2.9e-20 102.4 96 57.3
Psat0s3790g0040 Pisum sativum HOM05D000113 ORTHO05D002571 4.9e-20 101.7 95 60.0
TPR.G12156 Trifolium pratense HOM05D000113 ORTHO05D002571 4.9e-20 101.7 95 58.9
Rhsim06G0025800 Rhododendron simsii HOM05D000113 ORTHO05D002571 3.2e-19 99.0 129 49.6
Medtr1g010030 Medicago truncatula HOM05D000113 ORTHO05D002571 4.2e-19 98.6 143 46.9
AL7G28140 Arabidopsis lyrata HOM05D000113 ORTHO05D002571 9.3e-19 97.4 141 46.8
BcaC05g27851 Brassica carinata HOM05D000113 ORTHO05D002571 2.1e-18 96.3 95 55.8
C05p38490 Brassica napus HOM05D000113 ORTHO05D002571 2.1e-18 96.3 95 55.8
BolC5t32583H Brassica oleracea HOM05D000113 ORTHO05D002571 2.1e-18 96.3 95 55.8
VMungo1127G1561 Vigna mungo HOM05D000113 ORTHO05D002571 2.7e-18 95.9 96 55.2
A05p24800 Brassica napus HOM05D000113 ORTHO05D002571 3.5e-18 95.5 94 55.3
BraA05t21363Z Brassica rapa HOM05D000113 ORTHO05D002571 3.5e-18 95.5 94 55.3
Lsat_1_v5_gn_6_69341 Lactuca sativa HOM05D000113 ORTHO05D002571 3.5e-18 95.5 80 61.2
Aa31LG7G6920 Aethionema arabicum HOM05D000113 ORTHO05D002571 7.8e-18 94.4 141 46.8
ATR0064G016 Amborella trichopoda HOM05D000113 ORTHO05D002571 7.8e-18 94.4 103 52.4
DCAR_026352 Daucus carota HOM05D000113 ORTHO05D002571 7.8e-18 94.4 142 39.4
BcaB03g13727 Brassica carinata HOM05D000113 ORTHO05D012125 1.7e-17 93.2 94 53.2
MD06G1200100 Malus domestica HOM05D000113 ORTHO05D002571 2.3e-17 92.8 88 56.8
QL10p018794 Quercus lobata HOM05D000113 ORTHO05D002571 1.1e-16 90.5 96 57.3
Mapoly0054s0103 Marchantia polymorpha HOM05D000113 ORTHO05D002571 1.5e-16 90.1 139 45.3
Nitab4.5_0008517g0020 Nicotiana tabacum HOM05D000113 ORTHO05D002571 1.5e-16 90.1 106 50.9
HanXRQChr12g0377671 Helianthus annuus HOM05D000113 ORTHO05D012125 1.9e-16 89.7 138 44.2
Nitab4.5_0000219g0080 Nicotiana tabacum HOM05D000113 ORTHO05D002571 3.3e-16 89.0 105 51.4
CSS0030678 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D002571 9.6e-16 87.4 131 47.3
CDE02G1559 Ceratophyllum demersum HOM05D000113 ORTHO05D002571 1.6e-15 86.7 139 42.4
RcHm_v2.0_Chr2g0092491 Rosa chinensis HOM05D000113 ORTHO05D002571 2.1e-15 86.3 144 45.1
Thhalv10006650m.g Eutrema salsugineum HOM05D000113 ORTHO05D002571 3.6e-15 85.5 80 57.5
Ciclev10024265m.g Citrus clementina HOM05D000113 ORTHO05D012125 4.0e-14 82.0 108 49.1
FvH4_1g06760 Fragaria vesca HOM05D000113 ORTHO05D002571 4.0e-14 82.0 143 43.4
Ah.13g073050 Amaranthus hybridus HOM05D000113 ORTHO05D002571 6.9e-14 81.3 88 55.7
Aa31LG9G8960 Aethionema arabicum HOM05D000113 ORTHO05D002571 9.0e-14 80.9 76 56.6
Nitab4.5_0004622g0020 Nicotiana tabacum HOM05D000113 ORTHO05D002571 9.0e-14 80.9 81 58.0
AUR62002552 Chenopodium quinoa HOM05D000113 ORTHO05D002571 1.5e-13 80.1 145 42.1
FAN23G0734 Fragaria x ananassa HOM05D000113 ORTHO05D002571 2.6e-13 79.3 143 42.7
Atru.chr12.1784 Acer truncatum HOM05D000113 ORTHO05D012125 4.5e-13 78.6 75 60.0
MD02G1072500 Malus domestica HOM05D000113 ORTHO05D002571 5.8e-13 78.2 143 39.9
Pp3c1_18490 Physcomitrium patens HOM05D000113 ORTHO05D002571 2.2e-12 76.3 95 42.1
Hund09854 Selenicereus undatus HOM05D000113 ORTHO05D012125 2.9e-12 75.9 149 43.0
MD08G1042900 Malus domestica HOM05D000113 ORTHO05D002571 3.8e-12 75.5 109 43.1
arahy.Tifrunner.gnm1.ann1.U2PNLV Arachis hypogaea HOM05D000113 ORTHO05D002571 1.1e-11 73.9 145 39.3
SMO356G0256 Selaginella moellendorffii HOM05D000113 ORTHO05D002571 2.4e-11 72.8 99 44.4
Lsat_1_v5_gn_9_24861 Lactuca sativa HOM05D000113 ORTHO05D002571 4.2e-11 72.0 85 55.3
HanXRQChr09g0270171 Helianthus annuus HOM05D000113 ORTHO05D002571 9.3e-11 70.9 68 55.9
CBR_g24329 Chara braunii HOM05D000113 ORTHO05D002571 1.6e-10 70.1 96 42.7
Ciclev10017694m.g Citrus clementina HOM05D000113 ORTHO05D012125 2.7e-10 69.3 77 51.9
SEGI_38837 Sequoiadendron giganteum HOM05D000113 ORTHO05D012125 4.6e-10 68.6 72 51.4
Prupe.6G014300 Prunus persica HOM05D000113 ORTHO05D012125 1.8e-09 66.6 77 50.6
Os05g0389800 Oryza sativa ssp. japonica HOM05D000113 ORTHO05D002571 8.7e-09 64.3 71 47.9
QL93p0191_0033 Quercus lobata HOM05D000113 ORTHO05D002571 8.7e-09 64.3 73 54.8
RcHm_v2.0_Chr2g0092541 Rosa chinensis HOM05D000113 ORTHO05D002571 3.3e-08 62.4 97 38.1
Cre07.g349100 Chlamydomonas reinhardtii HOM05D000113 ORTHO05D002571 7.4e-08 61.2 102 35.3
FAN19G0651 Fragaria x ananassa HOM05D000113 ORTHO05D002571 1.3e-07 60.5 71 46.5
FvH4_1g06770 Fragaria vesca HOM05D000113 ORTHO05D002571 2.8e-07 59.3 71 45.1
FAN26G0107 Fragaria x ananassa HOM05D000113 ORTHO05D002571 2.8e-07 59.3 144 31.9
FAN26G0487 Fragaria x ananassa HOM05D000113 ORTHO05D012125 3.7e-07 58.9 76 51.3
FAN26G1920 Fragaria x ananassa HOM05D000113 ORTHO05D002571 8.1e-07 57.8 142 31.7
TWI81G1049 Tripterygium wilfordii HOM05D000113 ORTHO05D002571 8.1e-07 57.8 76 44.7
SHI27002 Sapria himalayana HOM05D000113 ORTHO05D012125 3.1e-06 55.8 148 35.1
Gohir.A04G140200 Gossypium hirsutum HOM05D000113 ORTHO05D002571 6.9e-06 54.7 67 43.3


User provided reference genes

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