Gene: Os05g0389800

General Information

Structural Information

  • Species Oryza sativa ssp. japonica
  • Gene Identifier Os05g0389800
  • Transcript Identifier Os05t0389800-01
  • Gene Type Coding gene
  • Location chr05 : 18872444-18875656 : negative

Gene Family Information

  • ID HOM05D000113
  • #Genes/#Species 2932/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Os05t0389800-01
  • MSU-ID LOC_Os05g32370.1
  • uniprot Q6I5X9

Descriptions

  • Description Similar to ATP-dependent helicase DHX8 (RNA helicase HRH1) (DEAH-box protein 8).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016070
ISO
PLAZA Integrative OrthologyRNA metabolic process Solyc03g115390.4
GO:0008380
ISO
PLAZA Integrative OrthologyRNA splicing AT1G32490
GO:0035194
ISO
PLAZA Integrative Orthologypost-transcriptional gene silencing by RNA AT1G32490
GO:0009793
ISO
PLAZA Integrative Orthologyembryo development ending in seed dormancy AT2G35340

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003724
IEA
GOA DatabaseRNA helicase activity
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0004386
IEA
GOA Databasehelicase activity
GO:0004386
IEA
InterProhelicase activity
GO:0003723
IBA
GOA DatabaseRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G32490
GO:0016020
ISO
PLAZA Integrative Orthologymembrane AT1G32490

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR007502 Helicase-associated domain
IPR011545 DEAD/DEAH box helicase domain
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR011709 Domain of unknown function DUF1605
IPR001650 Helicase, C-terminal
IPR014001 Helicase superfamily 1/2, ATP-binding domain
Mapman id Description
16.2.7.1.5 RNA processing.pre-mRNA splicing.spliceosome assembly and disassembly.RNA helicase activities.RNA helicase (Prp2)