Gene: TPR.G12156

General Information

Structural Information

  • Species Trifolium pratense
  • Gene Identifier TPR.G12156
  • Transcript Identifier TPR.T12553
  • Gene Type Coding gene
  • Location Tp57577_TGAC_v2_LG3 : 28880128-28898733 : positive

Gene Family Information

  • ID HOM05D000113
  • #Genes/#Species 2932/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Tp57577_TGAC_v2_mRNA12553.v2
  • id Tp57577_TGAC_v2_gene12156.v2
  • pacid 35989118

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016070
ISO
PLAZA Integrative OrthologyRNA metabolic process Solyc03g115390.4
GO:0008380
ISO
PLAZA Integrative OrthologyRNA splicing AT1G32490
GO:0035194
ISO
PLAZA Integrative Orthologypost-transcriptional gene silencing by RNA AT1G32490
GO:0009793
ISO
PLAZA Integrative Orthologyembryo development ending in seed dormancy AT2G35340

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004386
IEA
InterProhelicase activity
GO:0005524
ISO
PLAZA Homology (enrichment)ATP binding HOM05D000113
GO:0003724
ISO
PLAZA Integrative OrthologyRNA helicase activity Solyc03g115390.4

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G32490
GO:0016020
ISO
PLAZA Integrative Orthologymembrane AT1G32490

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR011709 Domain of unknown function DUF1605
IPR001650 Helicase, C-terminal
IPR007502 Helicase-associated domain
Mapman id Description
16.2.7.1.5 RNA processing.pre-mRNA splicing.spliceosome assembly and disassembly.RNA helicase activities.RNA helicase (Prp2)