Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401023772 Solanum tuberosum HOM05D005536 ORTHO05D006999 0.0e+00 1090.5 553 100.0
Solyc01g103950.4 Solanum lycopersicum HOM05D005536 ORTHO05D006999 3.1e-304 1047.7 554 96.4
Sopen01g046340 Solanum pennellii HOM05D005536 ORTHO05D006999 1.1e-293 1012.7 554 93.3
CAN.G798.23 Capsicum annuum HOM05D005536 ORTHO05D006999 5.1e-291 1003.8 554 92.6
Nitab4.5_0000948g0240 Nicotiana tabacum HOM05D005536 ORTHO05D006999 1.5e-290 1002.3 550 92.5
Peaxi162Scf00011g00635 Petunia axillaris HOM05D005536 ORTHO05D006999 1.7e-278 962.2 552 88.9
Dinv19387 Davidia involucrata HOM05D005536 ORTHO05D006999 2.7e-228 795.4 513 79.7
Cc02_g22780 Coffea canephora HOM05D005536 ORTHO05D006999 3.0e-227 792.0 539 76.1
Oeu049828.1 Olea europaea HOM05D005536 ORTHO05D006999 7.5e-226 787.3 498 80.1
Migut.B00813 Erythranthe guttata HOM05D005536 ORTHO05D006999 4.5e-223 778.1 523 75.1
MSTRG.20308 Avicennia marina HOM05D005536 ORTHO05D006999 5.9e-223 777.7 555 72.8
Lj5A254G85 Lonicera japonica HOM05D005536 ORTHO05D006999 1.3e-222 776.5 550 74.4
QL02p099453 Quercus lobata HOM05D005536 ORTHO05D006999 5.0e-222 774.6 507 77.5
GSVIVG01023338001 Vitis vinifera HOM05D005536 ORTHO05D006999 8.5e-222 773.9 485 80.2
Gohir.A13G035900 Gossypium hirsutum HOM05D005536 ORTHO05D006999 1.5e-221 773.1 505 77.2
Haze_01749 Corylus avellana HOM05D005536 ORTHO05D006999 3.2e-221 771.9 510 77.8
Hma1.2p1_1108F.1_g257740 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 2.1e-220 769.2 494 78.5
Cfa005500 Carpinus fangiana HOM05D005536 ORTHO05D006999 4.7e-220 768.1 511 76.9
Thecc.02G089300 Theobroma cacao HOM05D005536 ORTHO05D006999 8.0e-220 767.3 519 75.7
DCAR_025347 Daucus carota HOM05D005536 ORTHO05D006999 1.0e-219 766.9 525 74.7
ECA236G1742 Erigeron canadensis HOM05D005536 ORTHO05D006999 4.0e-219 765.0 518 74.3
Rhsim11G0127400 Rhododendron simsii HOM05D005536 ORTHO05D006999 6.8e-219 764.2 510 76.9
Gorai.013G038700 Gossypium raimondii HOM05D005536 ORTHO05D006999 2.6e-218 762.3 505 76.0
Manes.10G122900 Manihot esculenta HOM05D005536 ORTHO05D006999 4.4e-218 761.5 494 78.1
RcHm_v2.0_Chr7g0221201 Rosa chinensis HOM05D005536 ORTHO05D006999 9.8e-218 760.4 494 77.5
Nitab4.5_0002698g0120 Nicotiana tabacum HOM05D005536 ORTHO05D006999 1.7e-217 759.6 464 84.9
Gohir.D13G034200 Gossypium hirsutum HOM05D005536 ORTHO05D006999 3.7e-217 758.4 505 76.0
HanXRQChr16g0512011 Helianthus annuus HOM05D005536 ORTHO05D006999 1.1e-216 756.9 514 73.7
SalBow8G1128 Salvia bowleyana HOM05D005536 ORTHO05D004100 1.4e-216 756.5 501 76.4
TAR376G0002 Trochodendron aralioides HOM05D005536 ORTHO05D006999 1.4e-216 756.5 521 74.3
Duzib132G1177 Durio zibethinus HOM05D005536 ORTHO05D006999 3.1e-216 755.4 497 76.3
MBI06_g20964_MAGBIO Magnolia biondii HOM05D005536 ORTHO05D006999 5.4e-216 754.6 511 76.3
Ca_00061_v3 Cicer arietinum L. HOM05D005536 ORTHO05D006999 2.0e-215 752.7 502 74.5
Prupe.1G573200 Prunus persica HOM05D005536 ORTHO05D006999 2.0e-215 752.7 497 76.3
Medtr2g006350 Medicago truncatula HOM05D005536 ORTHO05D006999 3.5e-215 751.9 502 74.1
CANSAT11G0651 Cannabis sativa HOM05D005536 ORTHO05D006999 5.9e-215 751.1 497 75.7
DCAR_006692 Daucus carota HOM05D005536 ORTHO05D006999 5.9e-215 751.1 515 74.0
CiPaw.05G049900 Carya illinoinensis HOM05D005536 ORTHO05D006999 1.7e-214 749.6 499 76.8
FAN08G1062 Fragaria x ananassa HOM05D005536 ORTHO05D006999 2.3e-214 749.2 499 75.8
Ciclev10000782m.g Citrus clementina HOM05D005536 ORTHO05D006999 5.0e-214 748.0 512 74.8
FAN04G2224 Fragaria x ananassa HOM05D005536 ORTHO05D006999 6.6e-214 747.7 499 75.6
PSO170G4094 Papaver somniferum HOM05D005536 ORTHO05D006999 8.6e-214 747.3 493 78.1
PSO017G0725 Papaver somniferum HOM05D005536 ORTHO05D006999 1.1e-213 746.9 491 78.4
FvH4_5g28860 Fragaria vesca HOM05D005536 ORTHO05D006999 1.9e-213 746.1 499 75.4
Lsat_1_v5_gn_7_79100 Lactuca sativa HOM05D005536 ORTHO05D006999 2.5e-213 745.7 517 73.9
Psat1g222160 Pisum sativum HOM05D005536 ORTHO05D006999 2.5e-213 745.7 499 74.3
CSS0004244 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 9.5e-213 743.8 526 74.3
TPR.G2082 Trifolium pratense HOM05D005536 ORTHO05D006999 1.6e-212 743.0 496 74.0
vmacro01743 Vaccinium macrocarpon HOM05D005536 ORTHO05D006999 4.7e-212 741.5 508 75.8
FAN13G0194 Fragaria x ananassa HOM05D005536 ORTHO05D006999 2.0e-210 736.1 526 71.9
PGR042G3208 Punica granatum HOM05D005536 ORTHO05D006999 2.0e-210 736.1 498 75.3
Lalb_Chr20g0123601 Lupinus albus HOM05D005536 ORTHO05D006999 4.4e-210 734.9 507 73.8
Lj6g0001247 Lotus japonicus HOM05D005536 ORTHO05D006999 7.5e-210 734.2 546 67.9
TWI59G0084 Tripterygium wilfordii HOM05D005536 ORTHO05D006999 2.2e-209 732.6 518 72.0
VMungo0540G0609 Vigna mungo HOM05D005536 ORTHO05D006999 8.3e-209 730.7 512 71.7
Atru.BG.35.p Acer truncatum HOM05D005536 ORTHO05D006999 1.1e-208 730.3 481 76.9
Nn1g08381 Nelumbo nucifera HOM05D005536 ORTHO05D006999 2.4e-208 729.2 496 75.0
ClCG11G000890 Citrullus lanatus HOM05D005536 ORTHO05D006999 7.0e-208 727.6 497 73.6
Eucgr.G00559 Eucalyptus grandis HOM05D005536 ORTHO05D006999 7.0e-208 727.6 488 76.0
Potri.003G015700 Populus trichocarpa HOM05D005536 ORTHO05D006999 9.2e-208 727.2 491 76.0
Glyma.08G188200 Glycine max HOM05D005536 ORTHO05D006999 1.2e-207 726.9 482 74.3
Actinidia39023 Actinidia chinensis HOM05D005536 ORTHO05D006999 2.0e-207 726.1 494 77.5
arahy.Tifrunner.gnm1.ann1.CHH5X5 Arachis hypogaea HOM05D005536 ORTHO05D006999 7.8e-207 724.2 492 74.0
Glyma.12G169900 Glycine max HOM05D005536 ORTHO05D006999 7.8e-207 724.2 487 73.1
unitig_749.g13511 Utricularia gibba HOM05D005536 ORTHO05D006999 2.3e-206 722.6 489 73.0
Sabra03G0008600 Salix brachista HOM05D005536 ORTHO05D006999 2.9e-206 722.2 514 73.2
Aqoxy5G01212 Aquilegia oxysepala HOM05D005536 ORTHO05D006999 1.1e-205 720.3 514 72.0
Ah.03g139170 Amaranthus hybridus HOM05D005536 ORTHO05D006999 1.5e-205 719.9 483 75.4
AUR62003134 Chenopodium quinoa HOM05D005536 ORTHO05D006999 1.5e-205 719.9 493 74.0
arahy.Tifrunner.gnm1.ann1.DFQ1AC Arachis hypogaea HOM05D005536 ORTHO05D006999 1.9e-205 719.5 501 72.9
Phvul.006G216300 Phaseolus vulgaris HOM05D005536 ORTHO05D006999 8.0e-204 714.1 488 73.0
Sc18g0006730 Simmondsia chinensis HOM05D005536 ORTHO05D006999 1.8e-203 713.0 498 72.7
Carub.0001s2244 Capsella rubella HOM05D005536 ORTHO05D006999 6.8e-203 711.1 492 73.2
A09p41800 Brassica napus HOM05D005536 ORTHO05D006999 1.5e-202 709.9 500 72.2
Thhalv10007358m.g Eutrema salsugineum HOM05D005536 ORTHO05D006999 2.0e-202 709.5 496 72.6
AT1G22940 Arabidopsis thaliana HOM05D005536 ORTHO05D006999 3.4e-202 708.8 496 72.4
MELO3C022605.2 Cucumis melo HOM05D005536 ORTHO05D006999 4.4e-202 708.4 497 71.2
Sed0010884 Sechium edule HOM05D005536 ORTHO05D006999 7.5e-202 707.6 499 71.9
AL1G36500 Arabidopsis lyrata HOM05D005536 ORTHO05D006999 2.2e-201 706.1 496 72.0
C05p22080 Brassica napus HOM05D005536 ORTHO05D006999 3.7e-201 705.3 500 72.0
BolC5t30904H Brassica oleracea HOM05D005536 ORTHO05D006999 4.9e-201 704.9 500 72.0
BraA09t39668Z Brassica rapa HOM05D005536 ORTHO05D006999 6.4e-201 704.5 503 71.6
BcaC05g26200 Brassica carinata HOM05D005536 ORTHO05D006999 2.4e-200 702.6 500 71.8
BcaB07g32292 Brassica carinata HOM05D005536 ORTHO05D006999 9.2e-200 700.7 496 72.0
CsaV3_5G012850 Cucumis sativus L. HOM05D005536 ORTHO05D006999 2.0e-199 699.5 507 69.2
AUR62007953 Chenopodium quinoa HOM05D005536 ORTHO05D006999 3.5e-199 698.7 473 74.2
Aa31LG7G6950 Aethionema arabicum HOM05D005536 ORTHO05D006999 7.8e-199 697.6 492 72.0
MD15G1428400 Malus domestica HOM05D005536 ORTHO05D006999 2.3e-198 696.0 560 67.3
CARHR023320 Cardamine hirsuta HOM05D005536 ORTHO05D006999 3.0e-198 695.7 497 71.8
THA.LOC104806870 Tarenaya hassleriana HOM05D005536 ORTHO05D006999 1.1e-197 693.7 493 72.6
Sp1g20400 Schrenkiella parvula HOM05D005536 ORTHO05D006999 4.3e-197 691.8 493 71.2
ATR1136G209 Amborella trichopoda HOM05D005536 ORTHO05D006999 1.7e-193 679.9 493 70.0
Zm00001eb138710 Zea mays HOM05D005536 ORTHO05D006999 1.6e-191 673.3 489 70.1
SGA_v2.0_scaffold110G31339 Striga asiatica HOM05D005536 ORTHO05D006999 4.6e-191 671.8 677 56.3
SEGI_00443 Sequoiadendron giganteum HOM05D005536 ORTHO05D006999 6.4e-185 651.4 496 67.1
COL.COLO4_11769 Corchorus olitorius HOM05D005536 ORTHO05D006999 2.4e-184 649.4 508 66.7
Atru.chr6.551 Acer truncatum HOM05D005536 ORTHO05D006999 3.2e-184 649.0 437 74.6
HPP92_027057 Vanilla planifolia HOM05D005536 ORTHO05D006999 5.6e-181 638.3 513 63.9
Pp3c1_39340 Physcomitrium patens HOM05D005536 ORTHO05D006999 1.6e-172 610.1 498 62.4
HPP92_011418 Vanilla planifolia HOM05D005536 ORTHO05D006999 8.1e-172 607.8 480 64.8
FAN18G3948 Fragaria x ananassa HOM05D005536 ORTHO05D006999 1.1e-165 587.4 391 74.2
Mapoly0071s0067 Marchantia polymorpha HOM05D005536 ORTHO05D006999 8.1e-164 581.3 491 61.3
SMO244G0051 Selaginella moellendorffii HOM05D005536 ORTHO05D006999 1.9e-160 570.1 500 59.8
CDE04G3554 Ceratophyllum demersum HOM05D005536 ORTHO05D006999 2.4e-147 526.6 488 58.0
Hma1.2p1_1108F.1_g257730 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 1.5e-141 507.3 325 80.0
Hma1.2p1_3213F.1_g334040 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 9.1e-131 471.5 360 71.4
AagrBONN_evm.TU.Sc2ySwM_228.4801 Anthoceros agrestis HOM05D005536 ORTHO05D006999 4.2e-128 462.6 405 58.8
Cre08.g365600 Chlamydomonas reinhardtii HOM05D005536 ORTHO05D006999 1.8e-110 404.1 557 43.8
Hund15496 Selenicereus undatus HOM05D005536 ORTHO05D006999 5.7e-101 372.5 265 68.7
Zm00001eb264810 Zea mays HOM05D005536 ORTHO05D006999 3.3e-96 356.7 286 65.4
CsaV3_5G012700 Cucumis sativus L. HOM05D005536 ORTHO05D006999 2.4e-75 287.3 366 46.7
Actinidia00197 Actinidia chinensis HOM05D005536 ORTHO05D006999 4.1e-75 286.6 456 42.5
MD08G1236400 Malus domestica HOM05D005536 ORTHO05D006999 5.4e-75 286.2 280 57.1
Cpa.g.c34456.1 Carica papaya HOM05D005536 ORTHO05D006999 2.1e-74 284.3 172 80.8
Ca_00038_v3 Cicer arietinum L. HOM05D005536 ORTHO05D006999 6.6e-65 252.7 189 64.6
PGR044G0806 Punica granatum HOM05D005536 ORTHO05D006999 2.4e-59 234.2 155 74.8
Actinidia27730 Actinidia chinensis HOM05D005536 ORTHO05D006999 1.5e-56 224.9 142 76.1
CBR_g6347 Chara braunii HOM05D000019 ORTHO05D000800 5.3e-54 216.5 248 47.6
Cpa.g.sc31.109 Carica papaya HOM05D005536 ORTHO05D006999 2.0e-53 214.5 148 73.6
MD15G1428300 Malus domestica HOM05D005536 ORTHO05D006999 2.5e-48 197.6 130 80.8
Cpa.g.sc31.106 Carica papaya HOM05D005536 ORTHO05D006999 1.5e-45 188.3 129 76.0
EL10Ac6g14966 Beta vulgaris HOM05D005536 ORTHO05D006999 1.1e-43 182.2 123 69.1
CBR_g6345 Chara braunii HOM05D005536 ORTHO05D006999 5.5e-43 179.9 146 63.7
Actinidia27729 Actinidia chinensis HOM05D005536 ORTHO05D006999 2.8e-39 167.5 156 59.0
CSS0010000 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 1.1e-35 155.6 142 62.7
CSS0024456 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 1.1e-35 155.6 142 62.7
Os12g0192500 Oryza sativa ssp. japonica HOM05D005536 ORTHO05D006999 1.4e-35 155.2 97 77.3
CsaV3_5G012690 Cucumis sativus L. HOM05D005536 ORTHO05D006999 5.5e-35 153.3 173 52.6
Cfa024720 Carpinus fangiana HOM05D005536 ORTHO05D006999 2.3e-33 147.9 198 44.9
MD08G1236300 Malus domestica HOM05D005536 ORTHO05D006999 3.0e-33 147.5 130 64.6
Actinidia02850 Actinidia chinensis HOM05D005536 ORTHO05D006999 4.3e-32 143.7 291 36.8
Cpa.g.sc31.103 Carica papaya HOM05D005536 ORTHO05D006999 8.2e-23 112.8 118 52.5
Actinidia02848 Actinidia chinensis HOM05D005536 ORTHO05D006999 8.5e-20 102.8 75 72.0
ECA236G5131 Erigeron canadensis HOM05D005536 ORTHO05D006999 7.2e-19 99.8 62 75.8
Haze_27076 Corylus avellana HOM05D005536 ORTHO05D006999 9.7e-16 89.4 138 38.4
Cpa.g.sc31.102 Carica papaya HOM05D005536 ORTHO05D006999 1.4e-14 85.5 101 52.5
Actinidia27731 Actinidia chinensis HOM05D005536 ORTHO05D006999 9.1e-14 82.8 65 72.3
CARHR153920 Cardamine hirsuta HOM05D005536 ORTHO05D116486 1.9e-11 75.1 62 59.7
COL.COLO4_00968 Corchorus olitorius HOM05D005536 ORTHO05D155286 1.9e-11 75.1 204 27.0
Medtr2g006225 Medicago truncatula HOM05D005536 ORTHO05D266164 1.1e-06 59.3 76 43.4
SMO117G0213 Selaginella moellendorffii HOM05D005540 ORTHO05D006932 5.3e-06 57.0 187 27.3


User provided reference genes

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