Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401018705 Solanum tuberosum HOM05D001988 ORTHO05D004985 0.0e+00 1315.8 653 100.0
Sopen11g029230 Solanum pennellii HOM05D001988 ORTHO05D004985 0.0e+00 1257.3 653 95.9
Solyc11g071540.2 Solanum lycopersicum HOM05D001988 ORTHO05D004985 0.0e+00 1248.8 653 95.3
CAN.G439.30 Capsicum annuum HOM05D001988 ORTHO05D004985 0.0e+00 1078.9 663 84.0
Peaxi162Scf00217g00713 Petunia axillaris HOM05D001988 ORTHO05D004985 1.0e-298 1029.6 692 75.3
Sopen09g001990 Solanum pennellii HOM05D001988 ORTHO05D004985 1.1e-289 999.6 665 79.1
Solyc09g007120.4 Solanum lycopersicum HOM05D001988 ORTHO05D004985 1.6e-288 995.7 665 78.8
Nitab4.5_0000428g0180 Nicotiana tabacum HOM05D001988 ORTHO05D004985 4.9e-277 957.6 695 69.8
Nitab4.5_0007649g0010 Nicotiana tabacum HOM05D001988 ORTHO05D004985 8.4e-277 956.8 695 69.6
Actinidia19875 Actinidia chinensis HOM05D001988 ORTHO05D004985 3.4e-185 652.5 709 52.0
Lj8A318G47 Lonicera japonica HOM05D001988 ORTHO05D004985 2.2e-184 649.8 695 52.1
Lsat_1_v5_gn_8_100701 Lactuca sativa HOM05D001988 ORTHO05D004985 3.1e-178 629.4 667 52.0
GSVIVG01019982001 Vitis vinifera HOM05D001988 ORTHO05D004985 4.0e-178 629.0 672 52.2
Lsat_1_v5_gn_5_156781 Lactuca sativa HOM05D001988 ORTHO05D004985 6.8e-178 628.2 680 51.5
Rhsim12G0063800 Rhododendron simsii HOM05D001988 ORTHO05D004985 2.0e-177 626.7 717 49.9
Cc09_g03970 Coffea canephora HOM05D001988 ORTHO05D004985 2.2e-176 623.2 680 52.6
SGA_v2.0_scaffold58G20462 Striga asiatica HOM05D001988 ORTHO05D004985 1.0e-173 614.4 662 49.8
HanXRQChr05g0145521 Helianthus annuus HOM05D001988 ORTHO05D004985 3.9e-173 612.5 659 51.9
HanXRQChr09g0255131 Helianthus annuus HOM05D001988 ORTHO05D004985 3.9e-173 612.5 654 52.4
MSTRG.27418 Avicennia marina HOM05D001988 ORTHO05D004985 5.1e-173 612.1 702 50.0
Cfa008981 Carpinus fangiana HOM05D001988 ORTHO05D004985 8.1e-171 604.7 734 46.9
Cpa.g.sc128.24 Carica papaya HOM05D001988 ORTHO05D004985 2.0e-169 600.1 714 48.3
Glyma.11G111300 Glycine max HOM05D001988 ORTHO05D004985 4.4e-169 599.0 706 47.5
Migut.F02100 Erythranthe guttata HOM05D001988 ORTHO05D004985 7.6e-169 598.2 658 49.8
ECA248G0899 Erigeron canadensis HOM05D001988 ORTHO05D004985 1.3e-168 597.4 658 50.0
CSS0030030 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D004985 2.2e-168 596.7 709 49.5
CANSAT54G1389 Cannabis sativa HOM05D001988 ORTHO05D004985 5.4e-167 592.0 726 46.3
Lsat_1_v5_gn_4_55321 Lactuca sativa HOM05D001988 ORTHO05D004985 3.5e-166 589.3 666 50.2
Eucgr.B03445 Eucalyptus grandis HOM05D001988 ORTHO05D004985 5.1e-165 585.5 714 46.5
QL03p064038 Quercus lobata HOM05D001988 ORTHO05D004985 2.5e-164 583.2 720 46.5
Phvul.011G039300 Phaseolus vulgaris HOM05D001988 ORTHO05D004985 3.3e-164 582.8 714 47.8
QL03p063402 Quercus lobata HOM05D001988 ORTHO05D004985 7.3e-164 581.6 720 46.4
Manes.01G185700 Manihot esculenta HOM05D001988 ORTHO05D004985 1.6e-163 580.5 716 48.6
VMungo1127G0715 Vigna mungo HOM05D001988 ORTHO05D004985 6.9e-162 575.1 712 46.9
Prupe.1G174900 Prunus persica HOM05D001988 ORTHO05D004985 1.2e-161 574.3 701 47.8
MD04G1025400 Malus domestica HOM05D001988 ORTHO05D004985 1.3e-160 570.9 699 46.6
vmacro01260 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 1.7e-160 570.5 712 48.6
PGR102G2417 Punica granatum HOM05D001988 ORTHO05D004985 1.4e-159 567.4 694 47.1
ClCG11G010950 Citrullus lanatus HOM05D001988 ORTHO05D004985 1.3e-157 560.8 726 46.6
Sabra10G0129300 Salix brachista HOM05D001988 ORTHO05D004985 1.3e-157 560.8 705 47.1
Lj3g0010541 Lotus japonicus HOM05D001988 ORTHO05D004985 6.7e-157 558.5 706 44.5
ECA234G0637 Erigeron canadensis HOM05D001988 ORTHO05D004985 1.1e-156 557.8 668 48.1
Haze_12013 Corylus avellana HOM05D001988 ORTHO05D004985 1.9e-156 557.0 855 40.6
Ciclev10030768m.g Citrus clementina HOM05D001988 ORTHO05D004985 2.5e-156 556.6 731 46.2
SalBow1G3615 Salvia bowleyana HOM05D001988 ORTHO05D004985 9.6e-156 554.7 682 46.8
Thecc.02G346500 Theobroma cacao HOM05D001988 ORTHO05D004985 1.6e-155 553.9 709 47.7
vmacro01166 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 2.1e-155 553.5 714 47.1
Duzib251G0871 Durio zibethinus HOM05D001988 ORTHO05D004985 8.1e-155 551.6 708 46.6
FAN21G2649 Fragaria x ananassa HOM05D001988 ORTHO05D004985 1.8e-154 550.4 705 46.5
Lalb_Chr14g0368981 Lupinus albus HOM05D001988 ORTHO05D004985 1.2e-153 547.7 706 46.3
MELO3C008752.2 Cucumis melo HOM05D001988 ORTHO05D004985 3.4e-153 546.2 732 44.8
FvH4_3g26291 Fragaria vesca HOM05D001988 ORTHO05D004985 1.0e-152 544.7 704 46.6
Gorai.009G324500 Gossypium raimondii HOM05D001988 ORTHO05D004985 2.2e-152 543.5 705 45.7
TWI53G0339 Tripterygium wilfordii HOM05D001988 ORTHO05D004985 2.2e-152 543.5 661 48.6
Ca_20931_v3 Cicer arietinum L. HOM05D001988 ORTHO05D004985 2.9e-152 543.1 710 44.5
Gohir.D05G304800 Gossypium hirsutum HOM05D001988 ORTHO05D004985 2.9e-152 543.1 705 45.7
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 6.4e-152 542.0 704 46.4
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 1.1e-151 541.2 709 46.0
Sed0003814 Sechium edule HOM05D001988 ORTHO05D004985 2.1e-150 537.0 723 44.3
Medtr4g057650 Medicago truncatula HOM05D001988 ORTHO05D004985 2.3e-149 533.5 678 46.0
Psat7g139200 Pisum sativum HOM05D001988 ORTHO05D004985 8.7e-149 531.6 693 44.0
Nn4g23157 Nelumbo nucifera HOM05D001988 ORTHO05D004985 1.9e-148 530.4 706 45.2
arahy.Tifrunner.gnm1.ann1.AY0VQT Arachis hypogaea HOM05D001988 ORTHO05D004985 6.2e-147 525.4 724 43.2
arahy.Tifrunner.gnm1.ann1.8UN484 Arachis hypogaea HOM05D001988 ORTHO05D004985 5.3e-146 522.3 724 43.4
Hund05880 Selenicereus undatus HOM05D001988 ORTHO05D004985 1.5e-145 520.8 718 44.0
arahy.Tifrunner.gnm1.ann1.41IR6N Arachis hypogaea HOM05D001988 ORTHO05D004985 2.0e-145 520.4 724 43.0
Gohir.A05G183600 Gossypium hirsutum HOM05D001988 ORTHO05D004985 2.9e-144 516.5 706 44.5
DCAR_007151 Daucus carota HOM05D001988 ORTHO05D004985 3.2e-143 513.1 699 42.8
CiPaw.05G135300 Carya illinoinensis HOM05D001988 ORTHO05D004985 5.5e-143 512.3 581 48.7
TPR.G27077 Trifolium pratense HOM05D001988 ORTHO05D004985 1.2e-142 511.1 670 44.9
Migut.I00421 Erythranthe guttata HOM05D001988 ORTHO05D004985 1.3e-141 507.7 664 43.7
unitig_60.g25620 Utricularia gibba HOM05D001988 ORTHO05D004985 1.1e-140 504.6 673 43.8
Medtr4g071660 Medicago truncatula HOM05D001988 ORTHO05D004985 7.4e-140 501.9 657 45.4
SHI13475 Sapria himalayana HOM05D001988 ORTHO05D004985 9.7e-140 501.5 653 45.2
CsaV3_2G009530 Cucumis sativus L. HOM05D001988 ORTHO05D004985 3.1e-138 496.5 607 46.8
FAN25G3456 Fragaria x ananassa HOM05D001988 ORTHO05D004985 2.6e-137 493.4 679 45.2
AUR62005788 Chenopodium quinoa HOM05D001988 ORTHO05D004985 1.0e-136 491.5 701 43.1
THA.LOC104805159 Tarenaya hassleriana HOM05D001988 ORTHO05D004985 5.0e-136 489.2 687 43.4
EL10Ac6g13205 Beta vulgaris HOM05D001988 ORTHO05D004985 9.4e-135 485.0 695 43.2
Dinv16646 Davidia involucrata HOM05D001988 ORTHO05D004985 1.5e-132 477.6 404 59.9
Aa31LG2G7390 Aethionema arabicum HOM05D001988 ORTHO05D004985 1.7e-131 474.2 699 42.6
Hma1.2p1_0265F.1_g106750 Hydrangea macrophylla HOM05D001988 ORTHO05D004985 5.9e-129 465.7 406 57.1
Carub.0005s0183 Capsella rubella HOM05D001988 ORTHO05D004985 7.7e-129 465.3 706 44.2
EL10Ac9g22126 Beta vulgaris HOM05D001988 ORTHO05D004985 1.1e-127 461.5 738 41.3
TPR.G16225 Trifolium pratense HOM05D001988 ORTHO05D004985 3.2e-127 459.9 638 42.2
Sc11g0001930 Simmondsia chinensis HOM05D001988 ORTHO05D004985 1.2e-126 458.0 676 41.9
Aqoxy1G01101 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.8e-125 454.1 686 41.8
AL5G12570 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 1.8e-125 454.1 699 41.2
Ah.05g179340 Amaranthus hybridus HOM05D001988 ORTHO05D004985 1.1e-124 451.4 715 41.1
Oeu037938.2 Olea europaea HOM05D001988 ORTHO05D004985 5.7e-124 449.1 491 52.7
RcHm_v2.0_Chr5g0048641 Rosa chinensis HOM05D001988 ORTHO05D004985 9.7e-124 448.4 532 50.4
BolC8t52776H Brassica oleracea HOM05D001988 ORTHO05D004985 6.3e-123 445.7 669 42.9
RcHm_v2.0_Chr7g0220021 Rosa chinensis HOM05D001988 ORTHO05D004985 1.1e-122 444.9 539 49.0
AT2G02955 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 3.1e-122 443.4 690 40.6
A09p68050 Brassica napus HOM05D001988 ORTHO05D004985 4.1e-122 443.0 667 43.5
BraA09t42140Z Brassica rapa HOM05D001988 ORTHO05D004985 4.1e-122 443.0 668 43.3
C08p52490 Brassica napus HOM05D001988 ORTHO05D004985 5.3e-122 442.6 670 44.0
Sp7g05500 Schrenkiella parvula HOM05D001988 ORTHO05D004985 2.6e-121 440.3 675 42.2
BcaC07g42212 Brassica carinata HOM05D001988 ORTHO05D004985 7.7e-121 438.7 667 44.2
Thhalv10027666m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 1.0e-117 428.3 685 40.9
TAR629G1399 Trochodendron aralioides HOM05D001988 ORTHO05D004985 2.6e-116 423.7 531 46.1
Medtr5g067430 Medicago truncatula HOM05D001988 ORTHO05D004985 2.2e-115 420.6 675 40.9
AUR62028773 Chenopodium quinoa HOM05D001988 ORTHO05D004985 8.2e-115 418.7 668 40.3
HPP92_021577 Vanilla planifolia HOM05D001988 ORTHO05D004985 5.9e-113 412.5 681 39.4
PSO017G3571 Papaver somniferum HOM05D001988 ORTHO05D004985 1.3e-112 411.4 631 41.5
PSO063G4641 Papaver somniferum HOM05D001988 ORTHO05D004985 5.0e-112 409.5 634 41.6
AL6G52060 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 1.9e-111 407.5 641 41.2
CDE07G0941 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 4.1e-106 389.8 565 41.9
MBI19_g09828_MAGBIO Magnolia biondii HOM05D001988 ORTHO05D004985 3.4e-100 370.2 523 43.2
Zm00001eb284870 Zea mays HOM05D001988 ORTHO05D004985 1.3e-99 368.2 656 35.7
SEGI_17598 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 4.1e-98 363.2 718 34.5
Carub.0006s3640 Capsella rubella HOM05D001988 ORTHO05D004985 1.0e-96 358.6 661 36.9
Eucgr.B03444 Eucalyptus grandis HOM05D001988 ORTHO05D004985 3.6e-94 350.1 461 45.3
PGSC0003DMG400002020 Solanum tuberosum HOM05D001988 ORTHO05D004985 7.5e-92 342.4 178 95.5
AUR62008859 Chenopodium quinoa HOM05D001988 ORTHO05D004985 1.2e-89 335.1 373 51.5
SEGI_28471 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 1.3e-88 331.6 703 32.7
Oeu007681.1 Olea europaea HOM05D001988 ORTHO05D004985 3.1e-85 320.5 297 57.2
Potri.010G169500 Populus trichocarpa HOM05D001988 ORTHO05D004985 3.1e-85 320.5 399 46.6
CARHR145370 Cardamine hirsuta HOM05D001988 ORTHO05D004985 6.0e-81 306.2 476 41.2
Thhalv10004418m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 2.1e-78 297.7 369 44.4
Pp3c9_8400 Physcomitrium patens HOM05D001988 ORTHO05D004985 1.1e-71 275.4 685 31.2
Hund25598 Selenicereus undatus HOM05D001988 ORTHO05D004985 6.2e-70 269.6 617 33.9
arahy.Tifrunner.gnm1.ann1.N3HM5N Arachis hypogaea HOM05D001988 ORTHO05D004985 3.3e-63 247.3 402 38.3
Peaxi162Scf00342g00711 Petunia axillaris HOM05D001988 ORTHO05D004985 3.1e-61 240.7 467 39.2
Mapoly0075s0087 Marchantia polymorpha HOM05D001988 ORTHO05D004985 5.8e-60 236.5 806 27.7
COL.COLO4_23013 Corchorus olitorius HOM05D001988 ORTHO05D004985 7.6e-60 236.1 703 30.2
Atru.chr11.1785 Acer truncatum HOM05D001988 ORTHO05D004985 1.3e-59 235.3 364 41.2
AagrBONN_evm.TU.Sc2ySwM_362.1334 Anthoceros agrestis HOM05D001988 ORTHO05D004985 5.1e-56 223.4 808 24.5
ATR0782G208 Amborella trichopoda HOM05D001988 ORTHO05D004985 1.1e-53 215.7 355 40.3
Atru.chr11.1786 Acer truncatum HOM05D001988 ORTHO05D004985 1.7e-43 181.8 141 61.0
Actinidia31897 Actinidia chinensis HOM05D001988 ORTHO05D004985 4.9e-43 180.3 228 47.4
Peaxi162Scf00342g00712 Petunia axillaris HOM05D001988 ORTHO05D004985 1.9e-39 168.3 163 60.7
Aqoxy5G02833 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 4.8e-38 163.7 237 41.4
AagrBONN_evm.TU.Sc2ySwM_362.1335 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.4e-37 162.2 767 22.3
Hund25529 Selenicereus undatus HOM05D001988 ORTHO05D004985 1.3e-35 155.6 256 35.2
Aqoxy5G02832 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 8.4e-35 152.9 245 39.2
PSO513G0179 Papaver somniferum HOM05D001988 ORTHO05D004985 6.0e-33 146.7 464 28.4
Medtr4g071850 Medicago truncatula HOM05D001988 ORTHO05D004985 5.1e-32 143.7 198 39.9
Nitab4.5_0004699g0020 Nicotiana tabacum HOM05D001988 ORTHO05D004985 4.1e-29 134.0 453 27.8
CARHR145380 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.7e-27 128.6 194 38.7
RcHm_v2.0_Chr7g0220011 Rosa chinensis HOM05D001988 ORTHO05D004985 2.3e-24 118.2 99 58.6
RcHm_v2.0_Chr5g0048631 Rosa chinensis HOM05D001988 ORTHO05D004985 1.9e-23 115.2 99 58.6
SMO239G0039 Selaginella moellendorffii HOM05D001988 ORTHO05D004985 1.6e-22 112.1 151 41.1
CARHR212720 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.1e-21 109.4 301 33.2
AagrBONN_evm.TU.Sc2ySwM_117.2968 Anthoceros agrestis HOM05D001988 ORTHO05D004985 5.0e-19 100.5 203 30.0
AT1G42615 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 9.7e-15 86.3 144 38.2
AagrBONN_evm.TU.Sc2ySwM_369.75 Anthoceros agrestis HOM05D001988 ORTHO05D004985 1.3e-14 85.9 367 23.4
Aqoxy5G02834 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.7e-14 85.5 113 43.4
CDE06G2098 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 3.1e-13 81.3 298 26.2
AL7G47160 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 8.5e-11 73.2 233 30.5
Os05g0352700 Oryza sativa ssp. japonica HOM05D001988 ORTHO05D004985 7.2e-10 70.1 189 29.1
EL10As5g23508 Beta vulgaris HOM05D001988 ORTHO05D004985 3.6e-09 67.8 56 57.1
Atru.chr11.1787 Acer truncatum HOM05D001988 ORTHO05D004985 4.7e-09 67.4 68 45.6
MCO03G550 Micromonas commoda HOM05D001988 ORTHO05D004985 7.9e-09 66.6 394 21.1
CARHR289080 Cardamine hirsuta HOM05D001988 ORTHO05D004985 3.9e-08 64.3 65 53.8
BcaC07g42209 Brassica carinata HOM05D001988 ORTHO05D004985 5.1e-08 63.9 129 34.9
QL03p063393 Quercus lobata HOM05D001988 ORTHO05D004985 3.3e-07 61.2 50 54.0
Cfa008983 Carpinus fangiana HOM05D001988 ORTHO05D004985 1.3e-06 59.3 119 36.1
Sp2g13990 Schrenkiella parvula HOM05D001988 ORTHO05D004985 1.3e-06 59.3 195 30.8
QL03p064050 Quercus lobata HOM05D001988 ORTHO05D004985 2.2e-06 58.5 50 54.0


User provided reference genes

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