Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400033614 Solanum tuberosum HOM05D004448 ORTHO05D005919 0.0e+00 1088.2 522 100.0
Sopen07g011050 Solanum pennellii HOM05D004448 ORTHO05D005919 1.6e-246 855.9 454 90.5
Solyc07g021550.3 Solanum lycopersicum HOM05D004448 ORTHO05D005919 2.0e-244 849.0 454 90.1
Nitab4.5_0000938g0020 Nicotiana tabacum HOM05D004448 ORTHO05D005919 2.5e-231 805.4 500 78.4
Nitab4.5_0000713g0030 Nicotiana tabacum HOM05D004448 ORTHO05D005919 3.4e-220 768.5 521 73.1
Peaxi162Scf00175g00047 Petunia axillaris HOM05D004448 ORTHO05D005919 6.0e-217 757.7 527 71.2
Nitab4.5_0004087g0010 Nicotiana tabacum HOM05D004448 ORTHO05D005919 3.2e-162 575.9 518 58.5
Cc06_g11170 Coffea canephora HOM05D004448 ORTHO05D005919 8.2e-150 534.6 523 53.3
Dinv42301 Davidia involucrata HOM05D004448 ORTHO05D005919 7.7e-148 528.1 554 50.2
Dinv36750 Davidia involucrata HOM05D004448 ORTHO05D005919 3.1e-133 479.6 520 48.8
CSS0023607 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 2.1e-129 466.8 486 49.4
QL02p063021 Quercus lobata HOM05D004448 ORTHO05D005919 3.6e-129 466.1 554 47.1
Actinidia25266 Actinidia chinensis HOM05D004448 ORTHO05D005919 1.4e-128 464.2 451 53.2
GSVIVG01015227001 Vitis vinifera HOM05D004448 ORTHO05D005919 1.6e-121 440.7 545 45.3
Rhsim05G0022900 Rhododendron simsii HOM05D004448 ORTHO05D005919 5.2e-120 435.6 507 47.3
Hma1.2p1_0663F.1_g198910 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 8.3e-118 428.3 532 45.1
Haze_25890 Corylus avellana HOM05D004448 ORTHO05D005919 1.1e-114 417.9 536 45.7
RhsimUnG0189000 Rhododendron simsii HOM05D004448 ORTHO05D005919 5.6e-114 415.6 445 49.4
vmacro17218 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 1.1e-112 411.4 470 48.5
Cfa003108 Carpinus fangiana HOM05D004448 ORTHO05D005919 3.1e-112 409.8 537 44.9
vmacro22686 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 4.0e-112 409.5 470 48.7
Oeu024590.1 Olea europaea HOM05D004448 ORTHO05D005919 8.9e-112 408.3 372 55.6
Potri.006G150000 Populus trichocarpa HOM05D004448 ORTHO05D005919 6.4e-110 402.1 541 44.5
Lsat_1_v5_gn_5_145680 Lactuca sativa HOM05D004448 ORTHO05D005919 1.3e-107 394.4 519 43.9
CiPaw.03G218000 Carya illinoinensis HOM05D004448 ORTHO05D005919 1.7e-107 394.0 527 44.4
CSS0050052 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 3.9e-107 392.9 521 44.0
Duzib168G0645 Durio zibethinus HOM05D004448 ORTHO05D005919 6.2e-105 385.6 547 41.3
Rhsim03G0233500 Rhododendron simsii HOM05D004448 ORTHO05D005919 3.1e-104 383.3 510 42.7
Thecc.09G092200 Theobroma cacao HOM05D004448 ORTHO05D005919 6.4e-102 375.6 546 41.2
ClCG03G015750 Citrullus lanatus HOM05D004448 ORTHO05D005919 7.1e-101 372.1 466 45.9
Eucgr.C00913 Eucalyptus grandis HOM05D004448 ORTHO05D005919 7.8e-100 368.6 564 41.3
FAN26G2794 Fragaria x ananassa HOM05D004448 ORTHO05D005919 7.8e-100 368.6 457 44.2
COL.COLO4_18221 Corchorus olitorius HOM05D004448 ORTHO05D005919 1.3e-99 367.9 538 40.9
FAN26G0987 Fragaria x ananassa HOM05D004448 ORTHO05D005919 2.3e-99 367.1 457 45.1
TWI32G1061 Tripterygium wilfordii HOM05D004448 ORTHO05D005919 1.1e-98 364.8 474 45.1
PGR142G4073 Punica granatum HOM05D004448 ORTHO05D005919 1.5e-98 364.4 457 46.2
Sabra06G0118700 Salix brachista HOM05D004448 ORTHO05D005919 3.3e-98 363.2 449 45.9
Prupe.7G212600 Prunus persica HOM05D004448 ORTHO05D005919 4.3e-98 362.8 455 45.7
FAN23G3053 Fragaria x ananassa HOM05D004448 ORTHO05D005919 8.1e-97 358.6 556 40.8
Ciclev10010615m.g Citrus clementina HOM05D004448 ORTHO05D005919 1.8e-96 357.5 510 41.8
FvH4_1g07151 Fragaria vesca HOM05D004448 ORTHO05D005919 1.8e-96 357.5 457 43.5
FAN19G1271 Fragaria x ananassa HOM05D004448 ORTHO05D005919 1.2e-95 354.8 541 41.0
RcHm_v2.0_Chr2g0093041 Rosa chinensis HOM05D004448 ORTHO05D005919 2.0e-95 354.0 461 43.4
HanXRQChr12g0354731 Helianthus annuus HOM05D004448 ORTHO05D005919 1.3e-94 351.3 368 49.2
SalBow6G4094 Salvia bowleyana HOM05D004448 ORTHO05D005919 1.7e-94 350.9 390 48.2
DCAR_024685 Daucus carota HOM05D004448 ORTHO05D005919 2.9e-94 350.1 516 41.1
RcHm_v2.0_Chr2g0093031 Rosa chinensis HOM05D004448 ORTHO05D005919 1.9e-93 347.4 518 41.7
Phvul.004G171600 Phaseolus vulgaris HOM05D004448 ORTHO05D005919 3.2e-93 346.7 452 45.6
Lj2g0008301 Lotus japonicus HOM05D004448 ORTHO05D005919 9.2e-93 345.1 471 43.9
Gohir.D08G265800 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.6e-92 344.4 518 42.1
AUR62031324 Chenopodium quinoa HOM05D004448 ORTHO05D005919 3.5e-92 343.2 456 43.2
MELO3C015453.2 Cucumis melo HOM05D004448 ORTHO05D005919 6.0e-92 342.4 484 43.8
CsaV3_1G040260 Cucumis sativus L. HOM05D004448 ORTHO05D005919 6.0e-92 342.4 456 46.1
Gohir.A08G245000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 7.8e-92 342.0 516 42.1
PSO210G3334 Papaver somniferum HOM05D004448 ORTHO05D005919 1.0e-91 341.7 497 39.4
ECA234G2909 Erigeron canadensis HOM05D004448 ORTHO05D005919 5.1e-91 339.3 309 54.4
Nn8g38906 Nelumbo nucifera HOM05D004448 ORTHO05D005919 2.5e-90 337.0 516 39.9
CsaV3_UNG066510 Cucumis sativus L. HOM05D004448 ORTHO05D005919 1.3e-89 334.7 445 46.1
AUR62027409 Chenopodium quinoa HOM05D004448 ORTHO05D005919 1.6e-89 334.3 449 43.2
EL10Ac8g19309 Beta vulgaris HOM05D004448 ORTHO05D005919 2.8e-89 333.6 456 43.2
PSO210G5509 Papaver somniferum HOM05D004448 ORTHO05D005919 6.9e-88 328.9 489 38.4
CANSAT56G0950 Cannabis sativa HOM05D004448 ORTHO05D005919 2.6e-87 327.0 370 49.5
Ah.14g085380 Amaranthus hybridus HOM05D004448 ORTHO05D005919 1.3e-86 324.7 445 41.8
Manes.03G032000 Manihot esculenta HOM05D004448 ORTHO05D005919 2.9e-86 323.6 460 43.3
Migut.J00591 Erythranthe guttata HOM05D004448 ORTHO05D005919 4.2e-85 319.7 300 54.3
unitig_0.g218 Utricularia gibba HOM05D004448 ORTHO05D005919 3.5e-84 316.6 377 46.4
Glyma.07G128700 Glycine max HOM05D004448 ORTHO05D005919 1.3e-83 314.7 452 42.0
VMungo0464G0625 Vigna mungo HOM05D005189 ORTHO05D006093 1.3e-83 314.7 413 45.0
Gohir.D08G266000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 5.1e-83 312.8 357 46.8
Ciclev10008074m.g Citrus clementina HOM05D004448 ORTHO05D005919 1.1e-82 311.6 525 38.5
Cpa.g.sc7.238 Carica papaya HOM05D004448 ORTHO05D005919 2.5e-82 310.5 309 50.5
vmacro06280 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 3.6e-81 306.6 444 41.2
Medtr7g090060 Medicago truncatula HOM05D004448 ORTHO05D005919 8.1e-81 305.4 380 47.9
Atru.chr7.1561 Acer truncatum HOM05D004448 ORTHO05D005919 6.9e-80 302.4 554 37.4
MBI08_g34934_MAGBIO Magnolia biondii HOM05D004448 ORTHO05D005919 9.0e-80 302.0 374 44.4
Psat1g049640 Pisum sativum HOM05D004448 ORTHO05D005919 9.0e-80 302.0 376 45.5
arahy.Tifrunner.gnm1.ann1.6Q96ZG Arachis hypogaea HOM05D004448 ORTHO05D005919 2.0e-79 300.8 374 44.9
arahy.Tifrunner.gnm1.ann1.LLR3FQ Arachis hypogaea HOM05D004448 ORTHO05D005919 3.4e-79 300.1 374 45.2
Hund06702 Selenicereus undatus HOM05D004448 ORTHO05D005919 9.9e-79 298.5 376 45.5
Sp6g18520 Schrenkiella parvula HOM05D004448 ORTHO05D005919 1.3e-78 298.1 450 40.2
Aqoxy5G03492 Aquilegia oxysepala HOM05D004448 ORTHO05D005919 3.8e-78 296.6 454 39.4
Duzib150G0429 Durio zibethinus HOM05D004448 ORTHO05D005919 2.4e-77 293.9 570 36.1
Medtr6g092520 Medicago truncatula HOM05D004448 ORTHO05D005919 3.5e-76 290.0 369 45.8
Aa31LG3G12720 Aethionema arabicum HOM05D004448 ORTHO05D005919 4.6e-76 289.7 470 39.4
AT5G56780 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 7.9e-76 288.9 452 40.5
Thhalv10015325m.g Eutrema salsugineum HOM05D004448 ORTHO05D005919 3.9e-75 286.6 444 40.8
Gohir.A08G244900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 6.7e-75 285.8 515 38.4
CDE09G0006 Ceratophyllum demersum HOM05D004448 ORTHO05D005919 1.5e-74 284.6 460 37.2
Carub.0008s1726 Capsella rubella HOM05D004448 ORTHO05D005919 2.5e-74 283.9 452 40.3
THA.LOC104813490 Tarenaya hassleriana HOM05D004448 ORTHO05D005919 1.3e-73 281.6 461 38.0
Sc18g0001910 Simmondsia chinensis HOM05D004448 ORTHO05D005919 1.6e-73 281.2 451 38.8
BcaC04g20054 Brassica carinata HOM05D004448 ORTHO05D005919 3.7e-73 280.0 448 39.1
BolC9t57684H Brassica oleracea HOM05D004448 ORTHO05D005919 4.8e-73 279.6 448 39.1
BraA10t43502Z Brassica rapa HOM05D004448 ORTHO05D005919 4.8e-73 279.6 447 39.4
A10p14110 Brassica napus HOM05D004448 ORTHO05D005919 8.1e-73 278.9 447 39.6
C09p48340 Brassica napus HOM05D004448 ORTHO05D005919 1.2e-71 275.0 448 38.8
BcaB08g36059 Brassica carinata HOM05D004448 ORTHO05D005919 1.5e-71 274.6 447 39.1
C04p01820 Brassica napus HOM05D004448 ORTHO05D005919 2.5e-69 267.3 455 37.4
BcaC02g12506 Brassica carinata HOM05D004448 ORTHO05D005919 4.6e-68 263.1 363 40.2
AL8G32620 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 7.9e-68 262.3 498 35.9
BraA05t19157Z Brassica rapa HOM05D004448 ORTHO05D005919 1.3e-67 261.5 365 41.4
BcaC02g12705 Brassica carinata HOM05D004448 ORTHO05D005919 1.1e-66 258.5 360 42.2
CARHR270530 Cardamine hirsuta HOM05D004448 ORTHO05D005919 4.8e-65 253.1 434 37.6
HPP92_006937 Vanilla planifolia HOM05D004448 ORTHO05D005919 3.4e-63 246.9 288 46.5
A05p01610 Brassica napus HOM05D004448 ORTHO05D005919 1.9e-61 241.1 308 43.5
Ca_08398_v3 Cicer arietinum L. HOM05D004448 ORTHO05D005919 7.9e-60 235.7 254 52.0
Os07g0586700 Oryza sativa ssp. japonica HOM05D004448 ORTHO05D005919 1.3e-59 235.0 501 33.7
Aa31LG2G21230 Aethionema arabicum HOM05D004448 ORTHO05D005919 3.0e-59 233.8 392 38.3
Zm00001eb325970 Zea mays HOM05D004448 ORTHO05D005919 9.7e-58 228.8 576 31.8
Mapoly0070s0093 Marchantia polymorpha HOM05D004448 ORTHO05D005919 1.1e-56 225.3 438 33.8
FvH4_1g07150 Fragaria vesca HOM05D004448 ORTHO05D005919 1.4e-56 224.9 407 36.4
Sed0012121 Sechium edule HOM05D004448 ORTHO05D005919 7.2e-53 212.6 329 39.8
Gohir.A08G245100 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.0e-51 208.8 352 38.9
RhsimUnG0145000 Rhododendron simsii HOM05D004448 ORTHO05D005919 3.0e-51 207.2 237 46.0
ATR0705G152 Amborella trichopoda HOM05D004448 ORTHO05D005919 5.7e-50 203.0 196 51.5
Rhsim03G0233900 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.7e-49 201.4 184 54.3
Pp3c3_34250 Physcomitrium patens HOM05D004448 ORTHO05D005919 1.1e-48 198.7 322 40.7
SGA_v2.0_scaffold62G21589 Striga asiatica HOM05D004448 ORTHO05D005919 3.8e-46 190.3 145 60.0
AagrBONN_evm.TU.Sc2ySwM_117.4075 Anthoceros agrestis HOM05D004448 ORTHO05D005919 3.2e-45 187.2 349 35.8
MD02G1076000 Malus domestica HOM05D004448 ORTHO05D005919 7.2e-45 186.0 153 62.1
CARHR270520 Cardamine hirsuta HOM05D004448 ORTHO05D005919 2.1e-44 184.5 348 36.8
Pp3c4_9790 Physcomitrium patens HOM05D004448 ORTHO05D005919 3.6e-44 183.7 348 34.8
Rhsim05G0023200 Rhododendron simsii HOM05D004448 ORTHO05D005919 5.1e-43 179.9 290 39.7
RhsimUnG0144800 Rhododendron simsii HOM05D004448 ORTHO05D005919 5.1e-43 179.9 290 39.7
CBR_g29538 Chara braunii HOM05D004448 ORTHO05D005919 1.1e-42 178.7 486 29.4
Gorai.N024000 Gossypium raimondii HOM05D004448 ORTHO05D005919 2.6e-42 177.6 381 33.9
TPR.G40396 Trifolium pratense HOM05D004448 ORTHO05D005919 2.0e-39 167.9 241 43.2
CANSAT56G3488 Cannabis sativa HOM05D004448 ORTHO05D005919 7.7e-39 166.0 227 43.2
SMO139G0129 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 2.9e-38 164.1 332 33.1
Pp3c16_1200 Physcomitrium patens HOM05D004448 ORTHO05D005919 1.1e-37 162.2 538 26.4
Pp3c27_3080 Physcomitrium patens HOM05D004448 ORTHO05D005919 9.4e-37 159.1 552 26.8
TPR.G35500 Trifolium pratense HOM05D004448 ORTHO05D005919 1.0e-35 155.6 154 54.5
Pp3c15_21310 Physcomitrium patens HOM05D004448 ORTHO05D005919 2.3e-35 154.5 468 28.4
Atru.chr7.1554 Acer truncatum HOM05D004448 ORTHO05D005919 4.4e-34 150.2 240 38.3
Lalb_Chr24g0393831 Lupinus albus HOM05D004448 ORTHO05D005919 1.3e-30 138.7 152 49.3
MD02G1075500 Malus domestica HOM05D004448 ORTHO05D005919 1.1e-29 135.6 211 36.0
AT5G56770 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 4.2e-29 133.7 181 42.0
SMO157G0009 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 1.6e-28 131.7 294 32.0
AL8G32610 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 1.8e-27 128.3 165 40.6
RhsimUnG0032400 Rhododendron simsii HOM05D004448 ORTHO05D005919 2.3e-27 127.9 265 34.3
TPR.G35590 Trifolium pratense HOM05D004448 ORTHO05D005919 2.3e-27 127.9 102 59.8
Hma1.2p1_0024F.1_g016070 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 2.4e-24 117.9 100 55.0
Gohir.D08G265900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 9.1e-24 115.9 381 27.8
SalBow1G6253 Salvia bowleyana HOM05D004448 ORTHO05D005919 2.7e-20 104.4 142 41.5
Atru.chr7.1555 Acer truncatum HOM05D004448 ORTHO05D005919 1.4e-19 102.1 97 52.6
Medtr6g092500 Medicago truncatula HOM05D004448 ORTHO05D005919 8.8e-19 99.4 114 45.6
CARHR233700 Cardamine hirsuta HOM05D004448 ORTHO05D015948 4.4e-18 97.1 474 24.3
AL7G26800 Arabidopsis lyrata HOM05D004448 ORTHO05D015948 8.3e-17 92.8 386 26.4
Pp3c5_7060 Physcomitrium patens HOM05D004448 ORTHO05D005919 1.4e-16 92.0 363 27.0
Carub.0008s1725 Capsella rubella HOM05D004448 ORTHO05D005919 3.1e-16 90.9 188 34.0
CBR_g20264 Chara braunii HOM05D000505 ORTHO05D000301 1.6e-15 88.6 136 37.5
Thhalv10025245m.g Eutrema salsugineum HOM05D004448 ORTHO05D015948 2.5e-13 81.3 272 27.9
Aa31LG3G540 Aethionema arabicum HOM05D001256 ORTHO05D001141 1.4e-11 75.5 224 30.8
Medtr6g092480 Medicago truncatula HOM05D012533 ORTHO05D264910 4.4e-10 70.5 61 52.5
Pp3c9_23170 Physcomitrium patens HOM05D004448 ORTHO05D005919 2.2e-09 68.2 262 28.2
Glyma.01G003300 Glycine max HOM05D004448 ORTHO05D005919 4.9e-09 67.0 98 40.8
BraA01t01701Z Brassica rapa HOM05D004448 ORTHO05D015948 8.3e-09 66.2 203 26.6
AT4G26170 Arabidopsis thaliana HOM05D004448 ORTHO05D015948 7.8e-07 59.7 107 34.6
Sp7g24190 Schrenkiella parvula HOM05D004448 ORTHO05D015948 7.8e-07 59.7 98 36.7
BraA05t19155Z Brassica rapa HOM05D004448 ORTHO05D005919 1.3e-06 58.9 89 34.8


User provided reference genes

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