Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400027872 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.0e-102 376.7 191 100.0
Solyc10g049510.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 7.6e-85 317.4 183 85.2
Solyc10g054950.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.3e-81 305.8 181 81.8
Solyc12g009090.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.8e-77 291.2 190 74.7
PGSC0003DMG400000323 Solanum tuberosum HOM05D001514 ORTHO05D005209 5.8e-77 291.2 190 74.7
Sopen12g004040 Solanum pennellii HOM05D001514 ORTHO05D005209 1.7e-76 289.7 190 74.2
Nitab4.5_0011363g0010 Nicotiana tabacum HOM05D001514 ORTHO05D005209 8.4e-76 287.3 188 73.4
Cc06_g12020 Coffea canephora HOM05D001514 ORTHO05D005209 2.4e-75 285.8 189 70.9
Sopen10g024920 Solanum pennellii HOM05D001514 ORTHO05D005209 1.6e-74 283.1 171 82.5
Nitab4.5_0000073g0250 Nicotiana tabacum HOM05D001514 ORTHO05D005209 7.8e-74 280.8 197 70.6
Nitab4.5_0001866g0080 Nicotiana tabacum HOM05D001514 ORTHO05D005209 1.6e-71 273.1 189 71.4
Solyc10g055100.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 6.2e-71 271.2 181 75.1
Solyc05g041170.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.1e-70 270.4 187 67.4
Solyc10g054980.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.4e-70 269.2 163 81.6
SGA_v2.0_scaffold97G29140 Striga asiatica HOM05D001514 ORTHO05D005209 2.4e-70 269.2 189 68.3
Solyc10g055070.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.7e-68 263.1 166 79.5
CSS0005970 Camellia sinensis var. sinensis HOM05D001514 ORTHO05D005209 3.8e-68 261.9 189 65.1
Lsat_1_v5_gn_7_35041 Lactuca sativa HOM05D001514 ORTHO05D005209 3.8e-68 261.9 182 68.1
SalBow6G1458 Salvia bowleyana HOM05D001514 ORTHO05D005209 4.9e-68 261.5 189 66.7
SalBow3G1655 Salvia bowleyana HOM05D001514 ORTHO05D005209 1.1e-67 260.4 189 66.1
Hma1.2p1_0928F.1_g237710 Hydrangea macrophylla HOM05D001514 ORTHO05D005209 1.9e-67 259.6 188 64.4
MSTRG.6002 Avicennia marina HOM05D001514 ORTHO05D005209 5.4e-67 258.1 189 64.0
Solyc10g055160.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 7.1e-67 257.7 151 82.1
ECA233G5402 Erigeron canadensis HOM05D001514 ORTHO05D005209 1.6e-66 256.5 183 66.7
Cpa.g.sc280.6 Carica papaya HOM05D001514 ORTHO05D005209 2.1e-66 256.1 189 65.6
HanXRQChr09g0237811 Helianthus annuus HOM05D001514 ORTHO05D005209 2.7e-66 255.8 189 65.6
Dinv42376 Davidia involucrata HOM05D001514 ORTHO05D005209 7.9e-66 254.2 185 63.8
Thecc.09G079100 Theobroma cacao HOM05D001514 ORTHO05D005209 2.3e-65 252.7 189 61.9
TWI60G0494 Tripterygium wilfordii HOM05D001514 ORTHO05D005209 2.3e-65 252.7 189 64.0
Solyc10g055020.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.0e-65 252.3 187 69.5
PGSC0003DMG400024425 Solanum tuberosum HOM05D001514 ORTHO05D005209 3.0e-65 252.3 140 88.6
Peaxi162Scf00928g00034 Petunia axillaris HOM05D001514 ORTHO05D005209 5.1e-65 251.5 173 69.4
Ciclev10012695m.g Citrus clementina HOM05D001514 ORTHO05D005209 1.1e-64 250.4 189 63.0
Prupe.7G201200 Prunus persica HOM05D001514 ORTHO05D005209 1.9e-64 249.6 185 61.6
Eucgr.C00825 Eucalyptus grandis HOM05D001514 ORTHO05D005209 3.3e-64 248.8 189 63.0
Migut.J00937 Erythranthe guttata HOM05D001514 ORTHO05D005209 4.3e-64 248.4 187 63.1
Haze_10270 Corylus avellana HOM05D001514 ORTHO05D005209 7.4e-64 247.7 189 61.9
COL.COLO4_18112 Corchorus olitorius HOM05D001514 ORTHO05D005209 1.3e-63 246.9 189 60.8
CiPaw.03G207800 Carya illinoinensis HOM05D001514 ORTHO05D005209 4.8e-63 245.0 189 60.8
Manes.03G199800 Manihot esculenta HOM05D001514 ORTHO05D005209 4.8e-63 245.0 189 63.0
MD15G1215700 Malus domestica HOM05D001514 ORTHO05D005209 8.1e-63 244.2 189 61.4
Potri.006G143400 Populus trichocarpa HOM05D001514 ORTHO05D005209 8.1e-63 244.2 189 61.4
QL11p000460 Quercus lobata HOM05D001514 ORTHO05D005209 8.1e-63 244.2 188 61.7
AUR62025186 Chenopodium quinoa HOM05D001514 ORTHO05D005209 1.1e-62 243.8 189 58.2
Duzib168G1760 Durio zibethinus HOM05D001514 ORTHO05D005209 1.4e-62 243.4 189 60.3
TAR626G0523 Trochodendron aralioides HOM05D001514 ORTHO05D005209 1.4e-62 243.4 178 64.0
TAR626G1304 Trochodendron aralioides HOM05D001514 ORTHO05D005209 1.4e-62 243.4 178 64.0
AUR62028988 Chenopodium quinoa HOM05D001514 ORTHO05D005209 1.8e-62 243.0 189 58.2
CsaV3_2G001190 Cucumis sativus L. HOM05D001514 ORTHO05D005209 1.8e-62 243.0 190 60.5
EL10Ac8g19111 Beta vulgaris HOM05D001514 ORTHO05D005209 3.1e-62 242.3 189 58.2
Hund08725 Selenicereus undatus HOM05D001514 ORTHO05D005209 4.0e-62 241.9 184 58.7
Gohir.A13G191300 Gossypium hirsutum HOM05D001514 ORTHO05D005209 9.0e-62 240.7 189 58.7
CAN.G1963.7 Capsicum annuum HOM05D001514 ORTHO05D005209 1.2e-61 240.4 167 70.7
Gohir.D13G196700 Gossypium hirsutum HOM05D001514 ORTHO05D005209 1.2e-61 240.4 189 58.7
MD15G1215800 Malus domestica HOM05D001514 ORTHO05D005209 2.0e-61 239.6 190 60.5
Nn8g38685 Nelumbo nucifera HOM05D001514 ORTHO05D005209 4.5e-61 238.4 178 60.7
Gorai.013G225400 Gossypium raimondii HOM05D001514 ORTHO05D005209 5.8e-61 238.0 189 58.2
TAR383G0900 Trochodendron aralioides HOM05D001514 ORTHO05D005209 5.8e-61 238.0 177 61.0
PGSC0003DMG400003348 Solanum tuberosum HOM05D001514 ORTHO05D005209 7.6e-61 237.7 131 90.1
Atru.chr7.1692 Acer truncatum HOM05D001514 ORTHO05D005209 9.9e-61 237.3 189 59.8
FvH4_1g08420 Fragaria vesca HOM05D001514 ORTHO05D005209 1.7e-60 236.5 184 58.2
PGR142G1966 Punica granatum HOM05D001514 ORTHO05D005209 2.9e-60 235.7 187 61.0
GSVIVG01015097001 Vitis vinifera HOM05D001514 ORTHO05D005209 3.8e-60 235.3 190 58.4
AL4G21890 Arabidopsis lyrata HOM05D001514 ORTHO05D005209 8.4e-60 234.2 182 61.0
Lj7A685T53 Lonicera japonica HOM05D001514 ORTHO05D005209 1.9e-59 233.0 231 51.9
AT2G28230 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 2.4e-59 232.6 182 61.0
Carub.0004s0911 Capsella rubella HOM05D001514 ORTHO05D005209 2.4e-59 232.6 182 60.4
ClCG11G001470 Citrullus lanatus HOM05D001514 ORTHO05D005209 3.2e-59 232.3 204 56.4
MBI13_g11335_MAGBIO Magnolia biondii HOM05D001514 ORTHO05D005209 4.2e-59 231.9 178 58.4
Aa31sc437G10 Aethionema arabicum HOM05D001514 ORTHO05D005209 7.1e-59 231.1 182 59.9
MELO3C004649.2 Cucumis melo HOM05D001514 ORTHO05D005209 7.1e-59 231.1 190 59.5
Thhalv10002659m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 7.1e-59 231.1 182 59.9
Sp4g11040 Schrenkiella parvula HOM05D001514 ORTHO05D005209 7.1e-59 231.1 182 60.4
Lj4g0013364 Lotus japonicus HOM05D001514 ORTHO05D005209 1.6e-58 229.9 181 60.8
Sed0009954 Sechium edule HOM05D001514 ORTHO05D005209 1.6e-58 229.9 190 58.9
Psat4g016720 Pisum sativum HOM05D001514 ORTHO05D005209 4.6e-58 228.4 184 59.8
PGSC0003DMG400040125 Solanum tuberosum HOM05D001514 ORTHO05D005209 4.6e-58 228.4 183 69.4
THA.LOC104808891 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 4.6e-58 228.4 189 59.3
RcHm_v2.0_Chr2g0094521 Rosa chinensis HOM05D001514 ORTHO05D005209 6.0e-58 228.0 181 59.7
Carub.0004s0910 Capsella rubella HOM05D001514 ORTHO05D005209 1.0e-57 227.3 184 57.6
Haze_25985 Corylus avellana HOM05D001514 ORTHO05D005209 1.8e-57 226.5 226 50.9
Haze_25993 Corylus avellana HOM05D001514 ORTHO05D005209 1.8e-57 226.5 226 50.9
Sabra06G0113700 Salix brachista HOM05D001514 ORTHO05D005209 3.0e-57 225.7 222 51.8
vmacro06328 Vaccinium macrocarpon HOM05D001514 ORTHO05D005209 3.0e-57 225.7 218 52.8
Solyc10g055150.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.5e-56 222.6 138 80.4
Rhsim03G0229200 Rhododendron simsii HOM05D001514 ORTHO05D005209 3.3e-56 222.2 173 61.3
BcaB02g10157 Brassica carinata HOM05D001514 ORTHO05D005209 9.6e-56 220.7 181 58.0
Sopen10g024960 Solanum pennellii HOM05D001514 ORTHO05D005209 9.6e-56 220.7 123 86.2
BcaC02g10956 Brassica carinata HOM05D001514 ORTHO05D005209 2.1e-55 219.5 181 57.5
C04p23290 Brassica napus HOM05D001514 ORTHO05D005209 2.1e-55 219.5 181 57.5
CAN.G2532.1 Capsicum annuum HOM05D001514 ORTHO05D005209 3.7e-55 218.8 158 68.4
Solyc10g049550.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.7e-55 218.8 140 78.6
AT4G09070 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 4.8e-55 218.4 184 56.5
Actinidia38471 Actinidia chinensis HOM05D001514 ORTHO05D005209 6.2e-55 218.0 177 59.9
THA.LOC104826585 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 6.2e-55 218.0 209 54.5
BolC4t23831H Brassica oleracea HOM05D001514 ORTHO05D005209 8.1e-55 217.6 181 56.9
BraA07t29585Z Brassica rapa HOM05D001514 ORTHO05D005209 8.1e-55 217.6 181 57.5
A07p18760 Brassica napus HOM05D001514 ORTHO05D005209 1.1e-54 217.2 181 57.5
Medtr2g063927 Medicago truncatula HOM05D001514 ORTHO05D005209 1.1e-54 217.2 181 57.5
HPP92_009229 Vanilla planifolia HOM05D001514 ORTHO05D005209 1.2e-53 213.8 177 53.7
Sabra06G0112300 Salix brachista HOM05D001514 ORTHO05D005209 2.0e-53 213.0 170 60.6
arahy.Tifrunner.gnm1.ann1.0DN5L0 Arachis hypogaea HOM05D001514 ORTHO05D005209 2.6e-53 212.6 181 54.1
arahy.Tifrunner.gnm1.ann1.0TW07M Arachis hypogaea HOM05D001514 ORTHO05D005209 2.6e-53 212.6 181 54.1
arahy.Tifrunner.gnm1.ann1.I7BKR8 Arachis hypogaea HOM05D001514 ORTHO05D005209 2.6e-53 212.6 181 54.1
Sc08g0008840 Simmondsia chinensis HOM05D001514 ORTHO05D005209 2.6e-53 212.6 167 61.1
Sc08g0009330 Simmondsia chinensis HOM05D001514 ORTHO05D005209 2.6e-53 212.6 167 61.1
Ca_21314_v3 Cicer arietinum L. HOM05D001514 ORTHO05D005209 3.4e-53 212.2 181 54.7
ATR0598G338 Amborella trichopoda HOM05D001514 ORTHO05D005209 7.6e-53 211.1 179 55.3
CANSAT11G2059 Cannabis sativa HOM05D001514 ORTHO05D005209 2.9e-52 209.1 165 59.4
Medtr4g125510 Medicago truncatula HOM05D001514 ORTHO05D005209 8.4e-52 207.6 181 56.9
TPR.G9427 Trifolium pratense HOM05D001514 ORTHO05D005209 8.4e-52 207.6 183 55.7
FAN26G1993 Fragaria x ananassa HOM05D001514 ORTHO05D005209 1.1e-51 207.2 169 56.2
PSO210G4222 Papaver somniferum HOM05D001514 ORTHO05D005209 1.4e-51 206.8 180 52.2
Glyma.13G109300 Glycine max HOM05D001514 ORTHO05D005209 1.9e-51 206.5 181 53.6
Glyma.17G050300 Glycine max HOM05D001514 ORTHO05D005209 3.2e-51 205.7 181 53.6
CAN.G299.3 Capsicum annuum HOM05D001514 ORTHO05D005209 4.2e-51 205.3 127 78.0
Phvul.003G131900 Phaseolus vulgaris HOM05D001514 ORTHO05D005209 4.2e-51 205.3 181 54.1
Aqoxy7G01056 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 9.3e-51 204.1 184 50.0
PSO386G0176 Papaver somniferum HOM05D001514 ORTHO05D005209 9.3e-51 204.1 180 51.1
Aqoxy7G01057 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 1.2e-50 203.8 184 50.5
Solyc10g055130.2 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.3e-49 200.3 118 80.5
CDE05G2440 Ceratophyllum demersum HOM05D001514 ORTHO05D005209 3.9e-49 198.7 182 51.1
Thhalv10017586m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 3.9e-49 198.7 182 54.9
Lalb_Chr07g0181101 Lupinus albus HOM05D001514 ORTHO05D005209 6.7e-49 198.0 189 49.2
unitig_749.g14240 Utricularia gibba HOM05D001514 ORTHO05D005209 3.3e-48 195.7 151 62.9
FAN26G0729 Fragaria x ananassa HOM05D001514 ORTHO05D005209 4.3e-48 195.3 189 50.3
Zm00001eb314270 Zea mays HOM05D001514 ORTHO05D005209 5.7e-48 194.9 183 50.8
Os09g0443500 Oryza sativa ssp. japonica HOM05D001514 ORTHO05D005209 7.4e-48 194.5 189 49.7
VMungo1215G3125 Vigna mungo HOM05D001514 ORTHO05D005209 9.6e-48 194.1 168 54.2
CAN.G1774.14 Capsicum annuum HOM05D001514 ORTHO05D005209 2.1e-47 193.0 146 67.8
Actinidia29922 Actinidia chinensis HOM05D001514 ORTHO05D005209 6.5e-44 181.4 146 57.5
Sopen10g024890 Solanum pennellii HOM05D001514 ORTHO05D005209 1.9e-43 179.9 102 85.3
Solyc10g055010.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.2e-43 179.1 109 78.0
Carub.0006s2765 Capsella rubella HOM05D001514 ORTHO05D005209 5.5e-43 178.3 185 44.9
CARHR121150 Cardamine hirsuta HOM05D001514 ORTHO05D005209 9.3e-43 177.6 182 49.5
SMO141G0192 Selaginella moellendorffii HOM05D001514 ORTHO05D005209 2.0e-37 159.8 181 43.1
Mapoly0097s0017 Marchantia polymorpha HOM05D001514 ORTHO05D005209 2.9e-36 156.0 175 41.1
Nitab4.5_0000073g0220 Nicotiana tabacum HOM05D001514 ORTHO05D005209 3.8e-36 155.6 107 68.2
Pp3c7_2780 Physcomitrium patens HOM05D001514 ORTHO05D005209 4.2e-35 152.1 174 42.5
Psat0s2317g0240 Pisum sativum HOM05D001514 ORTHO05D005209 1.2e-34 150.6 176 42.0
AagrBONN_evm.TU.Sc2ySwM_344.5098 Anthoceros agrestis HOM05D001514 ORTHO05D005209 3.6e-34 149.1 183 39.3
Sopen10g024880 Solanum pennellii HOM05D000004 ORTHO05D000002 4.6e-34 148.7 91 80.2
Psat0s4474g0080 Pisum sativum HOM05D001514 ORTHO05D005209 8.8e-33 144.4 176 40.3
Manes.15G009400 Manihot esculenta HOM05D001514 ORTHO05D005209 1.1e-32 144.1 128 58.6
DCAR_024739 Daucus carota HOM05D001514 ORTHO05D005209 1.5e-32 143.7 107 60.7
Sopen12g011120 Solanum pennellii HOM05D001514 ORTHO05D005209 1.5e-32 143.7 81 85.2
MD02G1088400 Malus domestica HOM05D001514 ORTHO05D005209 1.3e-31 140.6 120 55.0
CBR_g11153 Chara braunii HOM05D001514 ORTHO05D005209 1.8e-30 136.7 170 38.8
DCAR_026438 Daucus carota HOM05D001514 ORTHO05D005209 6.9e-30 134.8 108 57.4
Solyc12g062270.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.5e-24 117.1 111 59.5
DCAR_024738 Daucus carota HOM05D001514 ORTHO05D005209 1.3e-23 114.0 74 70.3
Potri.005G126902 Populus trichocarpa HOM05D001514 ORTHO05D005209 1.7e-15 87.0 83 54.2
CAN.G1963.4 Capsicum annuum HOM05D001514 ORTHO05D005209 2.8e-15 86.3 68 64.7
AT2G28020 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 1.1e-11 74.3 66 56.1
Solyc10g055030.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 9.4e-11 71.2 61 60.7
Solyc10g055040.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.6e-10 69.3 109 39.4
Cre11.g476900 Chlamydomonas reinhardtii HOM05D001514 ORTHO05D005209 2.2e-07 60.1 158 25.9


User provided reference genes

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