Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400024154 Solanum tuberosum HOM05D004152 ORTHO05D004878 5.5e-139 497.7 257 100.0
Solyc06g060790.1 Solanum lycopersicum HOM05D004152 ORTHO05D004878 2.0e-133 479.2 257 95.7
Sopen06g020930 Solanum pennellii HOM05D004152 ORTHO05D004878 3.8e-132 474.9 257 95.7
Nitab4.5_0000618g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 8.5e-116 420.6 261 85.8
Nitab4.5_0002881g0050 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.4e-113 413.3 261 83.5
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 3.7e-103 378.6 260 78.1
Peaxi162Scf01022g00023 Petunia axillaris HOM05D004152 ORTHO05D004878 8.0e-98 360.9 243 77.8
Lj2C222T2 Lonicera japonica HOM05D004152 ORTHO05D004878 7.0e-94 347.8 227 78.0
CAN.G62.23 Capsicum annuum HOM05D004152 ORTHO05D004878 2.7e-93 345.9 185 91.4
Duzib052G0353 Durio zibethinus HOM05D004152 ORTHO05D004878 1.2e-90 337.0 256 69.5
Thecc.02G150400 Theobroma cacao HOM05D004152 ORTHO05D004878 1.2e-90 337.0 257 70.8
Gohir.A04G110300 Gossypium hirsutum HOM05D004152 ORTHO05D004878 2.8e-90 335.9 261 70.5
QL12p011587 Quercus lobata HOM05D004152 ORTHO05D004878 6.2e-90 334.7 260 70.4
Oeu040710.1 Olea europaea HOM05D004152 ORTHO05D004878 8.0e-90 334.3 263 68.4
COL.COLO4_08312 Corchorus olitorius HOM05D004152 ORTHO05D004878 1.8e-89 333.2 258 71.3
ClCG01G004210 Citrullus lanatus HOM05D004152 ORTHO05D004878 6.8e-89 331.3 261 70.5
Gorai.012G137200 Gossypium raimondii HOM05D004152 ORTHO05D004878 6.8e-89 331.3 253 69.6
MELO3C005518.2 Cucumis melo HOM05D004152 ORTHO05D004878 1.5e-88 330.1 256 68.4
CSS0047405 Camellia sinensis var. sinensis HOM05D004152 ORTHO05D004878 3.4e-88 328.9 259 70.7
SGA_v2.0_scaffold104G30172 Striga asiatica HOM05D004152 ORTHO05D004878 4.4e-88 328.6 266 68.0
DCAR_002274 Daucus carota HOM05D004152 ORTHO05D004878 5.8e-88 328.2 255 69.4
Rhsim07G0110300 Rhododendron simsii HOM05D004152 ORTHO05D004878 7.5e-88 327.8 261 71.3
CANSAT21G2552 Cannabis sativa HOM05D004152 ORTHO05D004878 9.8e-88 327.4 255 68.6
Gohir.D04G150500 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.3e-87 327.0 253 68.8
Gohir.D04G150600 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.3e-87 327.0 253 68.8
MD04G1062100 Malus domestica HOM05D004152 ORTHO05D004878 1.3e-87 327.0 253 69.6
PGR031G2826 Punica granatum HOM05D004152 ORTHO05D004878 1.3e-87 327.0 243 71.6
TWI60G0584 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 2.2e-87 326.2 253 68.4
CsaV3_5G004400 Cucumis sativus L. HOM05D004152 ORTHO05D004878 2.9e-87 325.9 253 68.4
DCAR_008502 Daucus carota HOM05D004152 ORTHO05D004878 3.7e-87 325.5 231 71.4
FAN13G0727 Fragaria x ananassa HOM05D004152 ORTHO05D004878 6.4e-87 324.7 249 68.7
VMungo0331G1163 Vigna mungo HOM05D004152 ORTHO05D004878 6.4e-87 324.7 229 72.9
Sabra03G0074600 Salix brachista HOM05D004152 ORTHO05D004878 1.1e-86 323.9 252 69.0
MD06G1055800 Malus domestica HOM05D004152 ORTHO05D004878 1.9e-86 323.2 252 70.2
Manes.01G082700 Manihot esculenta HOM05D004152 ORTHO05D004878 1.9e-86 323.2 249 70.7
Phvul.010G153800 Phaseolus vulgaris HOM05D004152 ORTHO05D004878 1.9e-86 323.2 206 77.7
TAR629G1833 Trochodendron aralioides HOM05D004152 ORTHO05D004878 1.9e-86 323.2 248 68.5
Aqoxy7G00694 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 2.4e-86 322.8 251 69.7
Potri.003G107800 Populus trichocarpa HOM05D004152 ORTHO05D004878 2.4e-86 322.8 252 68.7
MSTRG.12117 Avicennia marina HOM05D004152 ORTHO05D004878 4.1e-86 322.0 261 67.0
Gorai.005G214700 Gossypium raimondii HOM05D004152 ORTHO05D004878 4.1e-86 322.0 257 69.6
Cpa.g.sc29.188 Carica papaya HOM05D004152 ORTHO05D004878 9.2e-86 320.9 251 66.5
Migut.A01125 Erythranthe guttata HOM05D004152 ORTHO05D004878 9.2e-86 320.9 184 85.3
Glyma.07G032200 Glycine max HOM05D004152 ORTHO05D004878 9.2e-86 320.9 223 73.1
arahy.Tifrunner.gnm1.ann1.HAI1EF Arachis hypogaea HOM05D004152 ORTHO05D004878 1.6e-85 320.1 255 66.7
Glyma.08G210500 Glycine max HOM05D004152 ORTHO05D004878 2.0e-85 319.7 249 67.9
Sed0004379 Sechium edule HOM05D004152 ORTHO05D004878 2.0e-85 319.7 255 68.6
TWI81G0703 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 2.7e-85 319.3 258 67.1
FAN18G1702 Fragaria x ananassa HOM05D004152 ORTHO05D004878 4.6e-85 318.5 251 66.9
CiPaw.16G091100 Carya illinoinensis HOM05D004152 ORTHO05D004878 6.0e-85 318.2 260 66.9
THA.LOC104824129 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 6.0e-85 318.2 243 67.5
FAN08G2273 Fragaria x ananassa HOM05D004152 ORTHO05D004878 7.8e-85 317.8 253 67.6
A03p23950 Brassica napus HOM05D004152 ORTHO05D004878 1.0e-84 317.4 257 66.9
SalBow6G1227 Salvia bowleyana HOM05D004152 ORTHO05D004878 1.0e-84 317.4 261 66.3
Aqoxy7G00850 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 1.3e-84 317.0 212 74.5
Sc10g0005540 Simmondsia chinensis HOM05D004152 ORTHO05D004878 1.3e-84 317.0 256 66.8
Haze_18794 Corylus avellana HOM05D004152 ORTHO05D004878 2.3e-84 316.2 259 68.7
ECA240G2077 Erigeron canadensis HOM05D004152 ORTHO05D004878 2.3e-84 316.2 245 66.1
FAN04G2897 Fragaria x ananassa HOM05D004152 ORTHO05D004878 2.3e-84 316.2 253 66.0
Medtr4g011180 Medicago truncatula HOM05D004152 ORTHO05D004878 2.3e-84 316.2 255 67.1
Carub.0004s2557 Capsella rubella HOM05D004152 ORTHO05D004878 5.0e-84 315.1 249 65.9
Ca_20428_v3 Cicer arietinum L. HOM05D004152 ORTHO05D004878 6.6e-84 314.7 251 66.9
Gohir.D02G191900 Gossypium hirsutum HOM05D004152 ORTHO05D004878 6.6e-84 314.7 254 68.1
BraA03t11610Z Brassica rapa HOM05D004152 ORTHO05D004878 8.6e-84 314.3 256 66.4
Psat7g255640 Pisum sativum HOM05D004152 ORTHO05D004878 8.6e-84 314.3 238 68.5
Prupe.5G066300 Prunus persica HOM05D004152 ORTHO05D004878 1.1e-83 313.9 255 66.3
Cfa019694 Carpinus fangiana HOM05D004152 ORTHO05D004878 1.5e-83 313.5 262 67.6
FvH4_5g19250 Fragaria vesca HOM05D004152 ORTHO05D004878 1.5e-83 313.5 251 66.1
HanXRQChr13g0417841 Helianthus annuus HOM05D004152 ORTHO05D004878 1.9e-83 313.2 251 66.9
Lj3g0007947 Lotus japonicus HOM05D004152 ORTHO05D004878 1.9e-83 313.2 243 68.3
HanXRQChr03g0088791 Helianthus annuus HOM05D004152 ORTHO05D004878 2.5e-83 312.8 256 66.8
C03p28570 Brassica napus HOM05D004152 ORTHO05D004878 3.3e-83 312.4 256 66.0
BolC3t15222H Brassica oleracea HOM05D004152 ORTHO05D004878 3.3e-83 312.4 251 66.1
Thhalv10017142m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 3.3e-83 312.4 264 65.2
PSO210G0624 Papaver somniferum HOM05D004152 ORTHO05D004878 3.3e-83 312.4 256 65.6
arahy.Tifrunner.gnm1.ann1.Y2K32V Arachis hypogaea HOM05D004152 ORTHO05D004878 4.3e-83 312.0 255 65.9
Sp4g25220 Schrenkiella parvula HOM05D004152 ORTHO05D004878 4.3e-83 312.0 248 65.3
Ah.12g054170 Amaranthus hybridus HOM05D004152 ORTHO05D004878 7.3e-83 311.2 250 65.2
Nn6g33894 Nelumbo nucifera HOM05D004152 ORTHO05D004878 1.2e-82 310.5 259 65.3
AL4G41740 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 1.6e-82 310.1 249 65.1
Lalb_Chr25g0279491 Lupinus albus HOM05D004152 ORTHO05D004878 1.6e-82 310.1 214 70.1
CARHR138160 Cardamine hirsuta HOM05D004152 ORTHO05D004878 2.1e-82 309.7 249 63.9
CARHR169410 Cardamine hirsuta HOM05D004152 ORTHO05D004878 2.1e-82 309.7 267 64.8
AUR62007107 Chenopodium quinoa HOM05D004152 ORTHO05D004878 2.8e-82 309.3 254 65.4
PSO210G4930 Papaver somniferum HOM05D004152 ORTHO05D004878 2.8e-82 309.3 258 65.9
unitig_899.g15440 Utricularia gibba HOM05D004152 ORTHO05D004878 4.7e-82 308.5 244 67.6
AT2G43090 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 8.1e-82 307.8 260 66.2
BcaC02g12415 Brassica carinata HOM05D004152 ORTHO05D004878 3.1e-81 305.8 247 64.0
BcaNung03538 Brassica carinata HOM05D004152 ORTHO05D004878 3.1e-81 305.8 260 63.1
Ciclev10021871m.g Citrus clementina HOM05D004152 ORTHO05D004878 3.1e-81 305.8 254 64.2
EL10Ac5g12362 Beta vulgaris HOM05D004152 ORTHO05D004878 6.8e-81 304.7 246 65.0
BraA05t19344Z Brassica rapa HOM05D004152 ORTHO05D004878 6.8e-81 304.7 243 65.4
Atru.chr9.1286 Acer truncatum HOM05D004152 ORTHO05D004878 8.9e-81 304.3 255 63.9
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.2e-80 303.9 208 75.5
BolC4t22054H Brassica oleracea HOM05D004152 ORTHO05D004878 3.4e-80 302.4 256 62.1
THA.LOC104803472 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 3.4e-80 302.4 257 63.0
AUR62019969 Chenopodium quinoa HOM05D004152 ORTHO05D004878 5.8e-80 301.6 255 64.7
Hund14573 Selenicereus undatus HOM05D004152 ORTHO05D004878 6.4e-79 298.1 205 72.7
CARHR169370 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.2e-77 293.9 246 63.4
Carub.0005s2573 Capsella rubella HOM05D004152 ORTHO05D004878 2.7e-77 292.7 184 76.6
AL5G40810 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 2.3e-76 289.7 239 63.6
Aa31LG10G13480 Aethionema arabicum HOM05D004152 ORTHO05D004878 3.0e-76 289.3 250 62.8
BcaB01g01073 Brassica carinata HOM05D004152 ORTHO05D004878 5.1e-76 288.5 208 69.2
Lj8A264G55 Lonicera japonica HOM05D004152 ORTHO05D004878 1.1e-75 287.3 173 82.1
Aa31LG1G24900 Aethionema arabicum HOM05D004152 ORTHO05D004878 1.9e-75 286.6 241 64.3
CARHR138170 Cardamine hirsuta HOM05D004152 ORTHO05D004878 4.3e-75 285.4 254 61.8
AT3G58990 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 7.3e-75 284.6 254 61.0
Lsat_1_v5_gn_6_92521 Lactuca sativa HOM05D004152 ORTHO05D004878 1.6e-74 283.5 260 63.1
SEGI_19785 Sequoiadendron giganteum HOM05D004152 ORTHO05D004878 3.6e-74 282.3 221 65.6
Actinidia10839 Actinidia chinensis HOM05D004152 ORTHO05D004878 4.7e-74 282.0 234 67.1
Carub.0002s0595 Capsella rubella HOM05D004152 ORTHO05D004878 4.7e-74 282.0 246 63.0
CDE11G0751 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 6.2e-74 281.6 236 63.1
Os02g0655300 Oryza sativa ssp. japonica HOM05D004152 ORTHO05D004878 2.0e-72 276.6 187 71.7
Zm00001eb249330 Zea mays HOM05D004152 ORTHO05D004878 9.9e-72 274.2 213 64.3
Mapoly0001s0104 Marchantia polymorpha HOM05D004152 ORTHO05D004878 1.3e-71 273.9 177 73.4
Aa31LG1G24910 Aethionema arabicum HOM05D004152 ORTHO05D004878 1.7e-71 273.5 254 59.1
Sp4g25230 Schrenkiella parvula HOM05D004152 ORTHO05D004878 1.7e-71 273.5 240 61.7
Thhalv10017125m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 2.9e-71 272.7 253 59.3
ATR0693G400 Amborella trichopoda HOM05D004152 ORTHO05D004878 6.4e-71 271.6 245 61.2
AT2G43100 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 6.4e-71 271.6 251 61.8
C04p04150 Brassica napus HOM05D004152 ORTHO05D004878 6.4e-71 271.6 254 59.4
BolC4t22055H Brassica oleracea HOM05D004152 ORTHO05D004878 6.4e-71 271.6 254 59.4
BcaNung03539 Brassica carinata HOM05D004152 ORTHO05D004878 8.4e-71 271.2 252 58.3
BcaC02g12414 Brassica carinata HOM05D004152 ORTHO05D004878 1.1e-70 270.8 254 59.4
A05p03590 Brassica napus HOM05D004152 ORTHO05D004878 1.1e-70 270.8 240 62.1
BraA05t19345Z Brassica rapa HOM05D004152 ORTHO05D004878 1.1e-70 270.8 240 61.7
AL4G41750 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 1.2e-69 267.3 252 59.9
Carub.0004s2558 Capsella rubella HOM05D004152 ORTHO05D004878 6.0e-69 265.0 253 58.9
Pp3c1_29090 Physcomitrium patens HOM05D004152 ORTHO05D004878 3.9e-68 262.3 176 69.3
BcaC01g05264 Brassica carinata HOM05D004152 ORTHO05D004878 1.9e-67 260.0 249 60.2
Dinv39162 Davidia involucrata HOM05D004152 ORTHO05D004878 1.9e-67 260.0 144 86.8
AagrBONN_evm.TU.Sc2ySwM_228.3330 Anthoceros agrestis HOM05D004152 ORTHO05D004878 3.3e-67 259.2 206 63.1
SMO274G0039 Selaginella moellendorffii HOM05D004152 ORTHO05D004878 9.6e-67 257.7 173 70.5
Pp3c14_19120 Physcomitrium patens HOM05D004152 ORTHO05D004878 2.8e-66 256.1 192 64.1
CDE11G0227 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 1.2e-64 250.8 150 78.0
Cc08_g12220 Coffea canephora HOM05D004152 ORTHO05D004878 1.1e-62 244.2 207 68.1
Cre06.g252650 Chlamydomonas reinhardtii HOM05D004152 ORTHO05D004878 1.4e-62 243.8 174 66.1
Gohir.A03G168700 Gossypium hirsutum HOM05D004152 ORTHO05D004878 2.7e-61 239.6 256 56.2
Dinv21650 Davidia involucrata HOM05D004152 ORTHO05D004878 3.8e-55 219.2 121 86.8
SHI09309 Sapria himalayana HOM05D004152 ORTHO05D004878 1.6e-53 213.8 133 73.7
SalBow1G7183 Salvia bowleyana HOM05D004152 ORTHO05D004878 1.0e-52 211.1 205 59.0
HPP92_020921 Vanilla planifolia HOM05D004152 ORTHO05D004878 2.3e-52 209.9 180 58.3
Nitab4.5_0002372g0010 Nicotiana tabacum HOM05D004152 ORTHO05D004878 6.7e-52 208.4 123 84.6
EL10Ac5g12363 Beta vulgaris HOM05D004152 ORTHO05D004878 4.0e-49 199.1 224 53.1
Lj8A267T12 Lonicera japonica HOM05D004152 ORTHO05D004878 6.9e-49 198.4 220 53.2
Actinidia31515 Actinidia chinensis HOM05D004152 ORTHO05D004878 4.5e-48 195.7 190 61.6
Rhsim05G0121600 Rhododendron simsii HOM05D004152 ORTHO05D004878 7.6e-48 194.9 165 65.5
Oeu047732.1 Olea europaea HOM05D004152 ORTHO05D004878 2.9e-47 193.0 260 48.1
Carub.0005s2576 Capsella rubella HOM05D004152 ORTHO05D004878 3.8e-47 192.6 216 51.9
Lj8A266T18 Lonicera japonica HOM05D004152 ORTHO05D004878 1.2e-45 187.6 220 52.3
Ah.12g054180 Amaranthus hybridus HOM05D004152 ORTHO05D004878 1.0e-44 184.5 221 47.1
Sed0021243 Sechium edule HOM05D004152 ORTHO05D004878 3.3e-43 179.5 182 58.2
TPR.G10893 Trifolium pratense HOM05D004152 ORTHO05D004878 1.8e-41 173.7 126 71.4
BcaB05g25308 Brassica carinata HOM05D004152 ORTHO05D004878 2.6e-32 143.3 170 51.8
Lsat_1_v5_gn_7_1160 Lactuca sativa HOM05D004152 ORTHO05D004878 2.7e-29 133.3 76 82.9
SalBow1G0783 Salvia bowleyana HOM05D001430 ORTHO05D004878 1.3e-28 131.0 104 62.5
A05p03570 Brassica napus HOM05D000373 ORTHO05D007048 9.7e-27 124.8 80 75.0
C04p04140 Brassica napus HOM05D000373 ORTHO05D007048 1.6e-26 124.0 79 73.4
AUR62007106 Chenopodium quinoa HOM05D004152 ORTHO05D004878 3.4e-24 116.3 140 50.0
Lsat_1_v5_gn_5_55401 Lactuca sativa HOM05D004152 ORTHO05D004878 7.7e-24 115.2 133 51.1
Rhsim03G0103100 Rhododendron simsii HOM05D004152 ORTHO05D004878 1.3e-23 114.4 88 69.3
ATR0693G063 Amborella trichopoda HOM05D004152 ORTHO05D004878 2.9e-23 113.2 125 52.0
GSVIVG01007403001 Vitis vinifera HOM05D004152 ORTHO05D004878 3.8e-15 86.3 215 38.6
COL.COLO4_34273 Corchorus olitorius HOM05D004152 ORTHO05D004878 8.5e-15 85.1 187 35.8
Ah.14g083550 Amaranthus hybridus HOM05D004152 ORTHO05D004878 2.7e-13 80.1 50 80.0
C03p28580 Brassica napus HOM05D004152 ORTHO05D004878 5.7e-11 72.4 88 43.2
Cfa024802 Carpinus fangiana HOM05D003112 ORTHO05D003660 7.4e-11 72.0 133 36.1
PRCOL_00005264 Prasinoderma coloniale HOM05D003112 ORTHO05D003660 1.7e-10 70.9 234 27.8
CsaV3_5G004360 Cucumis sativus L. HOM05D004152 ORTHO05D004878 3.1e-09 66.6 53 60.4
MCO01G562 Micromonas commoda HOM05D003112 ORTHO05D003660 9.1e-09 65.1 219 28.3
BcaB01g00650 Brassica carinata HOM05D004152 ORTHO05D004878 1.1e-06 58.2 54 48.1
Cfa023744 Carpinus fangiana HOM05D003112 ORTHO05D003660 4.2e-06 56.2 221 28.1
Ca_28701_v3 Cicer arietinum L. HOM05D004152 ORTHO05D003660 7.2e-06 55.5 100 38.0


User provided reference genes

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