Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400016186 Solanum tuberosum HOM05D005334 ORTHO05D006560 1.8e-204 715.7 362 100.0
Sopen11g005690 Solanum pennellii HOM05D005334 ORTHO05D006560 2.1e-197 692.2 362 96.7
Solyc11g010950.2 Solanum lycopersicum HOM05D005334 ORTHO05D006560 5.3e-196 687.6 362 96.7
CAN.G1813.2 Capsicum annuum HOM05D005334 ORTHO05D006560 4.5e-195 684.5 362 95.0
Nitab4.5_0000402g0140 Nicotiana tabacum HOM05D005334 ORTHO05D006560 4.2e-193 677.9 362 93.4
Peaxi162Scf00085g00115 Petunia axillaris HOM05D005334 ORTHO05D006560 1.3e-191 672.9 362 93.1
Hma1.2p1_0964F.1_g242010 Hydrangea macrophylla HOM05D005334 ORTHO05D006560 9.7e-158 560.5 380 74.2
Thecc.10G018300 Theobroma cacao HOM05D005334 ORTHO05D006560 1.3e-154 550.1 364 75.3
SGA_v2.0_scaffold45G17221 Striga asiatica HOM05D005334 ORTHO05D006560 2.9e-154 548.9 363 75.5
Actinidia05483 Actinidia chinensis HOM05D005334 ORTHO05D006560 5.0e-154 548.1 364 74.5
Gohir.D12G076300 Gossypium hirsutum HOM05D005334 ORTHO05D006560 4.2e-153 545.0 362 73.5
Rhsim04G0113300 Rhododendron simsii HOM05D005334 ORTHO05D006560 4.2e-153 545.0 364 74.5
vmacro09003 Vaccinium macrocarpon HOM05D005334 ORTHO05D006560 4.0e-151 538.5 364 73.9
Gorai.008G084700 Gossypium raimondii HOM05D005334 ORTHO05D006560 8.8e-151 537.3 362 72.9
Potri.010G189500 Populus trichocarpa HOM05D005334 ORTHO05D006560 8.8e-151 537.3 364 71.4
Cc07_g13790 Coffea canephora HOM05D005334 ORTHO05D006560 2.6e-150 535.8 363 72.7
Duzib128G0185 Durio zibethinus HOM05D005334 ORTHO05D006560 9.7e-150 533.9 374 72.2
Cfa006855 Carpinus fangiana HOM05D005334 ORTHO05D006560 2.2e-149 532.7 364 71.2
Prupe.1G076500 Prunus persica HOM05D005334 ORTHO05D006560 3.7e-149 531.9 363 71.9
Sed0026061 Sechium edule HOM05D005334 ORTHO05D006560 4.8e-149 531.6 366 72.4
CsaV3_6G044840 Cucumis sativus L. HOM05D005334 ORTHO05D006560 8.2e-149 530.8 363 71.6
Ciclev10008278m.g Citrus clementina HOM05D005334 ORTHO05D006560 1.1e-148 530.4 364 72.3
TWI34G1275 Tripterygium wilfordii HOM05D005334 ORTHO05D006560 5.3e-148 528.1 363 73.0
Sabra10G0146100 Salix brachista HOM05D005334 ORTHO05D006560 7.0e-148 527.7 385 67.5
ClCG01G018260 Citrullus lanatus HOM05D005334 ORTHO05D006560 1.2e-147 526.9 362 70.4
MELO3C007703.2 Cucumis melo HOM05D005334 ORTHO05D006560 1.2e-147 526.9 367 71.1
CANSAT01G0836 Cannabis sativa HOM05D005334 ORTHO05D006560 4.5e-147 525.0 364 70.6
FAN26G1496 Fragaria x ananassa HOM05D005334 ORTHO05D006560 5.9e-147 524.6 363 71.3
Eucgr.A00094 Eucalyptus grandis HOM05D005334 ORTHO05D006560 1.3e-146 523.5 364 72.0
RcHm_v2.0_Chr6g0270401 Rosa chinensis HOM05D005334 ORTHO05D006560 1.7e-146 523.1 363 71.3
MSTRG.3723 Avicennia marina HOM05D005334 ORTHO05D006560 2.2e-146 522.7 364 72.5
SalBow5G4670 Salvia bowleyana HOM05D005334 ORTHO05D006560 2.9e-146 522.3 359 72.4
RcHm_v2.0_Chr6g0270301 Rosa chinensis HOM05D005334 ORTHO05D006560 6.5e-146 521.2 363 71.3
MD01G1042400 Malus domestica HOM05D005334 ORTHO05D006560 1.1e-145 520.4 362 69.6
GSVIVG01003946001 Vitis vinifera HOM05D005334 ORTHO05D006560 1.1e-145 520.4 362 71.0
FvH4_7g07230 Fragaria vesca HOM05D005334 ORTHO05D006560 1.5e-145 520.0 363 71.1
Medtr8g007340 Medicago truncatula HOM05D005334 ORTHO05D006560 1.5e-145 520.0 364 71.2
SalBow5G3116 Salvia bowleyana HOM05D005334 ORTHO05D006560 1.9e-145 519.6 359 72.1
Haze_03908 Corylus avellana HOM05D005334 ORTHO05D006560 3.2e-145 518.8 357 70.6
QL06p036434 Quercus lobata HOM05D005334 ORTHO05D006560 4.2e-145 518.5 363 70.2
Lj3g0001207 Lotus japonicus HOM05D005334 ORTHO05D006560 9.4e-145 517.3 364 70.9
Manes.10G013400 Manihot esculenta HOM05D005334 ORTHO05D006560 9.4e-145 517.3 364 70.9
TAR625G0036 Trochodendron aralioides HOM05D005334 ORTHO05D006560 1.6e-144 516.5 363 71.3
FvH4_1g19290 Fragaria vesca HOM05D005334 ORTHO05D006560 2.1e-144 516.2 363 70.5
FAN23G0357 Fragaria x ananassa HOM05D005334 ORTHO05D006560 6.1e-144 514.6 363 70.5
FAN23G0783 Fragaria x ananassa HOM05D005334 ORTHO05D006560 6.1e-144 514.6 363 70.5
Ciclev10008715m.g Citrus clementina HOM05D005334 ORTHO05D006560 1.0e-143 513.8 367 70.6
Ca_14799_v3 Cicer arietinum L. HOM05D005334 ORTHO05D006560 5.2e-143 511.5 365 69.9
CiPaw.07G045200 Carya illinoinensis HOM05D005334 ORTHO05D006560 3.4e-142 508.8 366 69.4
arahy.Tifrunner.gnm1.ann1.DY9T0P Arachis hypogaea HOM05D005334 ORTHO05D006560 9.8e-142 507.3 364 69.5
ECA233G4415 Erigeron canadensis HOM05D005334 ORTHO05D006560 2.8e-141 505.8 362 70.7
arahy.Tifrunner.gnm1.ann1.D5QNLH Arachis hypogaea HOM05D005334 ORTHO05D006560 3.7e-141 505.4 364 69.2
VMungo0331G1245 Vigna mungo HOM05D005334 ORTHO05D006560 3.7e-141 505.4 364 69.5
Psat4g223080 Pisum sativum HOM05D005334 ORTHO05D006560 4.8e-141 505.0 365 69.0
Glyma.13G008300 Glycine max HOM05D005334 ORTHO05D006560 6.3e-141 504.6 365 70.7
Nn5g29815 Nelumbo nucifera HOM05D005334 ORTHO05D006560 1.4e-140 503.4 364 70.9
Phvul.010G046100 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 2.4e-140 502.7 364 69.2
Phvul.010G045900 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 9.1e-140 500.7 364 69.2
Sc03g0000510 Simmondsia chinensis HOM05D005334 ORTHO05D006560 1.2e-139 500.4 364 70.3
PSO832G1169 Papaver somniferum HOM05D005334 ORTHO05D006560 3.5e-139 498.8 362 68.2
CSS0002721 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 2.2e-138 496.1 337 72.1
PSO700G0130 Papaver somniferum HOM05D005334 ORTHO05D006560 3.8e-138 495.4 363 67.2
Lalb_Chr12g0210501 Lupinus albus HOM05D005334 ORTHO05D006560 1.1e-137 493.8 365 68.8
CiPaw.07G045000 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.9e-137 493.0 366 67.8
Migut.K00814 Erythranthe guttata HOM05D005334 ORTHO05D006560 1.9e-137 493.0 363 70.8
HanXRQChr08g0226671 Helianthus annuus HOM05D005334 ORTHO05D006560 3.6e-136 488.8 363 68.0
PSO761G0425 Papaver somniferum HOM05D005334 ORTHO05D006560 4.7e-136 488.4 364 67.0
Aqoxy6G01573 Aquilegia oxysepala HOM05D005334 ORTHO05D006560 1.5e-134 483.4 355 69.0
COL.COLO4_25710 Corchorus olitorius HOM05D005334 ORTHO05D006560 2.0e-134 483.0 307 75.6
PGR031G2068 Punica granatum HOM05D005334 ORTHO05D006560 2.6e-134 482.6 369 65.6
Lj2C525G9 Lonicera japonica HOM05D005334 ORTHO05D006560 1.1e-132 477.2 365 69.0
AUR62003692 Chenopodium quinoa HOM05D005334 ORTHO05D006560 9.2e-132 474.2 372 65.1
AUR62018003 Chenopodium quinoa HOM05D005334 ORTHO05D006560 2.7e-131 472.6 391 62.1
Thhalv10021017m.g Eutrema salsugineum HOM05D005334 ORTHO05D006560 8.0e-128 461.1 362 64.1
FAN19G2596 Fragaria x ananassa HOM05D005334 ORTHO05D006560 1.4e-127 460.3 363 66.1
Carub.0003s1053 Capsella rubella HOM05D005334 ORTHO05D006560 2.3e-127 459.5 359 64.6
Sp3g09500 Schrenkiella parvula HOM05D005334 ORTHO05D006560 3.0e-127 459.1 362 63.8
CARHR085780 Cardamine hirsuta HOM05D005334 ORTHO05D006560 8.9e-127 457.6 362 63.5
THA.LOC104816551 Tarenaya hassleriana HOM05D005334 ORTHO05D006560 3.4e-126 455.7 362 63.3
BcaC05g29390 Brassica carinata HOM05D005334 ORTHO05D006560 4.4e-126 455.3 363 64.2
A05p38080 Brassica napus HOM05D005334 ORTHO05D006560 8.3e-125 451.1 364 64.0
C05p56870 Brassica napus HOM05D005334 ORTHO05D006560 1.1e-124 450.7 364 64.0
CiPaw.07G049700 Carya illinoinensis HOM05D005334 ORTHO05D006560 3.2e-124 449.1 363 63.4
AT3G11220 Arabidopsis thaliana HOM05D005334 ORTHO05D006560 4.1e-124 448.7 353 64.3
Cpa.g.sc19.179 Carica papaya HOM05D005334 ORTHO05D006560 4.1e-124 448.7 364 65.1
Aa31LG3G4530 Aethionema arabicum HOM05D005334 ORTHO05D006560 1.2e-123 447.2 362 62.4
AL3G22740 Arabidopsis lyrata HOM05D005334 ORTHO05D006560 1.6e-123 446.8 370 63.5
BraA05t22600Z Brassica rapa HOM05D005334 ORTHO05D006560 4.6e-123 445.3 364 62.9
PSO013G0112 Papaver somniferum HOM05D005334 ORTHO05D006560 5.9e-123 444.9 318 68.9
BolC5t34351H Brassica oleracea HOM05D005334 ORTHO05D006560 3.0e-122 442.6 389 60.2
unitig_0.g2648 Utricularia gibba HOM05D005334 ORTHO05D006560 9.5e-121 437.6 377 61.5
Os06g0639600 Oryza sativa ssp. japonica HOM05D005334 ORTHO05D006560 4.7e-120 435.3 365 61.1
CiPaw.07G044700 Carya illinoinensis HOM05D005334 ORTHO05D006560 6.2e-120 434.9 366 60.7
Atru.chr12.1050 Acer truncatum HOM05D005334 ORTHO05D006560 2.3e-119 433.0 333 66.7
Zm00001eb387250 Zea mays HOM05D005334 ORTHO05D006560 5.6e-113 411.8 366 58.5
Dinv36960 Davidia involucrata HOM05D005334 ORTHO05D006560 2.8e-112 409.5 277 72.9
Lsat_1_v5_gn_6_15620 Lactuca sativa HOM05D005334 ORTHO05D006560 4.7e-112 408.7 363 61.2
Glyma.03G108600 Glycine max HOM05D005334 ORTHO05D006560 3.1e-111 406.0 302 67.2
CDE04G2384 Ceratophyllum demersum HOM05D005334 ORTHO05D006560 5.2e-111 405.2 361 58.7
MBI10_g34777_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 1.2e-110 404.1 340 62.1
Ah.02g123390 Amaranthus hybridus HOM05D005334 ORTHO05D006560 9.9e-110 401.0 361 58.2
SHI03443 Sapria himalayana HOM05D005334 ORTHO05D006560 2.4e-108 396.4 356 59.0
Hund14075 Selenicereus undatus HOM05D005334 ORTHO05D006560 3.5e-107 392.5 361 57.9
FAN03G2380 Fragaria x ananassa HOM05D005334 ORTHO05D006560 8.1e-104 381.3 377 56.8
SEGI_17743 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 5.2e-103 378.6 381 51.2
ATR1153G009 Amborella trichopoda HOM05D005334 ORTHO05D006560 1.3e-98 364.0 308 58.8
Gohir.A12G078265 Gossypium hirsutum HOM05D005334 ORTHO05D006560 5.6e-97 358.6 243 71.6
Pp3c9_23940 Physcomitrium patens HOM05D005334 ORTHO05D006560 9.9e-86 321.2 375 46.7
Mapoly0006s0234 Marchantia polymorpha HOM05D005334 ORTHO05D006560 1.6e-83 313.9 387 45.5
AagrBONN_evm.TU.Sc2ySwM_117.1770 Anthoceros agrestis HOM05D005334 ORTHO05D006560 3.4e-78 296.2 416 42.8
Dinv27014 Davidia involucrata HOM05D005334 ORTHO05D006560 2.2e-77 293.5 215 68.4
Thecc.09G278800 Theobroma cacao HOM05D005334 ORTHO05D006560 1.9e-76 290.4 277 55.2
Prupe.6G206700 Prunus persica HOM05D005334 ORTHO05D006560 1.4e-71 274.2 364 47.0
TPR.G11130 Trifolium pratense HOM05D005334 ORTHO05D006560 1.6e-67 260.8 196 65.8
TPR.G5292 Trifolium pratense HOM05D005334 ORTHO05D006560 4.6e-67 259.2 169 75.7
DCAR_003438 Daucus carota HOM05D005334 ORTHO05D006560 1.8e-66 257.3 306 47.7
Lj6g0009802 Lotus japonicus HOM05D005334 ORTHO05D006560 4.3e-65 252.7 201 63.7
Lj2g0000099 Lotus japonicus HOM05D005334 ORTHO05D006560 9.7e-65 251.5 169 72.2
Lsat_1_v5_gn_4_105120 Lactuca sativa HOM05D005334 ORTHO05D006560 5.9e-62 242.3 212 59.0
BcaB06g25638 Brassica carinata HOM05D005334 ORTHO05D006560 1.1e-57 228.0 168 69.0
Lsat_1_v5_gn_8_12861 Lactuca sativa HOM05D005334 ORTHO05D006560 5.0e-53 212.6 160 65.6
CSS0046374 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 1.9e-52 210.7 122 86.1
CSS0016906 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 4.7e-51 206.1 122 84.4
CiPaw.07G044400 Carya illinoinensis HOM05D005334 ORTHO05D006560 9.4e-44 181.8 137 67.9
Lsat_1_v5_gn_5_29040 Lactuca sativa HOM05D005334 ORTHO05D006560 4.7e-43 179.5 199 49.7
SMO146G0066 Selaginella moellendorffii HOM05D005334 ORTHO05D006560 2.3e-42 177.2 253 41.5
MD01G1042700 Malus domestica HOM05D005334 ORTHO05D006560 3.9e-42 176.4 165 56.4
RcHm_v2.0_Chr2g0110581 Rosa chinensis HOM05D005334 ORTHO05D006560 1.1e-41 174.9 307 37.1
CSS0017464 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 2.2e-40 170.6 122 73.8
Lsat_1_v5_gn_4_67481 Lactuca sativa HOM05D005334 ORTHO05D006560 4.5e-38 162.9 142 59.2
ATR0022G031 Amborella trichopoda HOM05D005334 ORTHO05D006560 6.5e-37 159.1 141 61.7
SEGI_40300 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 1.4e-31 141.4 199 40.2
Lsat_1_v5_gn_1_79261 Lactuca sativa HOM05D005334 ORTHO05D006560 5.9e-30 136.0 142 51.4
HPP92_008022 Vanilla planifolia HOM05D005334 ORTHO05D006560 8.0e-27 125.6 114 56.1
CSS0026696 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 3.0e-26 123.6 72 81.9
MBI03_g45376_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 3.4e-25 120.2 84 69.0
HPP92_008021 Vanilla planifolia HOM05D005334 ORTHO05D006560 7.0e-23 112.5 72 81.9
Cre03.g196000 Chlamydomonas reinhardtii HOM05D005334 ORTHO05D006560 3.6e-19 100.1 389 23.1
MBI03_g46739_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 1.4e-18 98.2 77 59.7
CBR_g30786 Chara braunii HOM05D000019 ORTHO05D000002 2.7e-14 84.0 136 33.8
MCO12G220 Micromonas commoda HOM05D005334 ORTHO05D006560 2.5e-12 77.4 295 25.8


User provided reference genes

Program Settings