Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400015429 Solanum tuberosum HOM05D002634 ORTHO05D003100 2.4e-29 131.3 59 100.0
Solyc12g088620.2 Solanum lycopersicum HOM05D002634 ORTHO05D003100 3.2e-26 120.9 59 88.1
Solyc05g014460.3 Solanum lycopersicum HOM05D002634 ORTHO05D003100 9.3e-26 119.4 59 88.1
Nitab4.5_0000934g0230 Nicotiana tabacum HOM05D002634 ORTHO05D003100 2.8e-22 107.8 59 76.3
Nitab4.5_0003633g0010 Nicotiana tabacum HOM05D002634 ORTHO05D003100 3.7e-22 107.5 58 75.9
Sopen12g030520 Solanum pennellii HOM05D002634 ORTHO05D003100 3.7e-22 107.5 50 92.0
CAN.G1054.5 Capsicum annuum HOM05D002634 ORTHO05D003100 4.8e-22 107.1 59 74.6
Peaxi162Scf00848g00317 Petunia axillaris HOM05D002634 ORTHO05D003100 6.3e-22 106.7 59 78.0
Manes.12G109000 Manihot esculenta HOM05D002634 ORTHO05D003100 1.4e-21 105.5 59 76.3
Manes.13G116500 Manihot esculenta HOM05D002634 ORTHO05D003100 1.4e-21 105.5 59 76.3
Lj4A762T8 Lonicera japonica HOM05D002634 ORTHO05D003100 1.8e-21 105.1 59 78.0
Solyc04g078320.4 Solanum lycopersicum HOM05D002634 ORTHO05D003100 2.4e-21 104.8 59 72.9
Sopen04g031910 Solanum pennellii HOM05D002634 ORTHO05D003100 2.4e-21 104.8 59 72.9
SGA_v2.0_scaffold214G42258 Striga asiatica HOM05D002634 ORTHO05D003100 2.4e-21 104.8 59 74.6
MSTRG.25062 Avicennia marina HOM05D002634 ORTHO05D003100 3.1e-21 104.4 59 76.3
SalBow7G2278 Salvia bowleyana HOM05D002634 ORTHO05D003100 3.1e-21 104.4 59 74.6
FAN20G1488 Fragaria x ananassa HOM05D002634 ORTHO05D003100 5.3e-21 103.6 59 72.9
TAR381G1718 Trochodendron aralioides HOM05D002634 ORTHO05D003100 5.3e-21 103.6 59 76.3
RcHm_v2.0_Chr6g0308951 Rosa chinensis HOM05D002634 ORTHO05D003100 6.9e-21 103.2 59 72.9
Sopen12g030530 Solanum pennellii HOM05D002634 ORTHO05D003100 9.0e-21 102.8 57 82.5
SGA_v2.0_scaffold102G29893 Striga asiatica HOM05D002634 ORTHO05D003100 1.2e-20 102.4 59 71.2
CAN.G107.42 Capsicum annuum HOM05D002634 ORTHO05D003100 1.5e-20 102.1 59 74.6
FAN27G3042 Fragaria x ananassa HOM05D002634 ORTHO05D003100 1.5e-20 102.1 59 71.2
HanXRQChr05g0133391 Helianthus annuus HOM05D002634 ORTHO05D003100 1.5e-20 102.1 59 71.2
Lsat_1_v5_gn_1_24041 Lactuca sativa HOM05D002634 ORTHO05D003100 1.5e-20 102.1 59 72.9
Nn5g30448 Nelumbo nucifera HOM05D002634 ORTHO05D003100 2.6e-20 101.3 59 71.2
QL06p040017 Quercus lobata HOM05D002634 ORTHO05D003100 7.7e-20 99.8 58 74.1
MD15G1290400 Malus domestica HOM05D002634 ORTHO05D003100 1.0e-19 99.4 59 74.6
HanXRQChr04g0103361 Helianthus annuus HOM05D002634 ORTHO05D003100 1.3e-19 99.0 59 72.9
unitig_8.g3367 Utricularia gibba HOM05D002634 ORTHO05D003100 1.7e-19 98.6 59 72.9
DCAR_012802 Daucus carota HOM05D002634 ORTHO05D003100 3.8e-19 97.4 59 71.2
Nitab4.5_0000569g0150 Nicotiana tabacum HOM05D002634 ORTHO05D003100 3.8e-19 97.4 48 87.5
Solyc12g088630.2 Solanum lycopersicum HOM05D002634 ORTHO05D003100 3.8e-19 97.4 57 80.7
Glyma.11G051700 Glycine max HOM05D002634 ORTHO05D003100 5.0e-19 97.1 59 72.9
PSO170G2848 Papaver somniferum HOM05D002634 ORTHO05D003100 6.5e-19 96.7 59 67.8
Psat4g083960 Pisum sativum HOM05D002634 ORTHO05D003100 8.5e-19 96.3 59 71.2
Glyma.05G100500 Glycine max HOM05D002634 ORTHO05D003100 1.1e-18 95.9 59 67.8
Glyma.17G165900 Glycine max HOM05D002634 ORTHO05D003100 1.1e-18 95.9 59 67.8
CSS0014373 Camellia sinensis var. sinensis HOM05D002634 ORTHO05D003100 1.9e-18 95.1 59 67.8
ECA247G2795 Erigeron canadensis HOM05D002634 ORTHO05D003100 1.9e-18 95.1 52 76.9
QL01p022252 Quercus lobata HOM05D002634 ORTHO05D003100 2.5e-18 94.7 58 69.0
THA.LOC104821238 Tarenaya hassleriana HOM05D002634 ORTHO05D003100 3.2e-18 94.4 59 66.1
TAR625G1461 Trochodendron aralioides HOM05D002634 ORTHO05D003100 1.2e-17 92.4 59 69.5
CSS0045917 Camellia sinensis var. sinensis HOM05D002634 ORTHO05D003100 2.7e-17 91.3 59 66.1
A07p16570 Brassica napus HOM05D002634 ORTHO05D003100 3.6e-17 90.9 59 67.8
Glyma.06G043800 Glycine max HOM05D002634 ORTHO05D003100 4.6e-17 90.5 59 67.8
Actinidia22667 Actinidia chinensis HOM05D002634 ORTHO05D003100 1.0e-16 89.4 60 65.0
SHI23106 Sapria himalayana HOM05D002634 ORTHO05D003100 1.4e-16 89.0 59 62.7
GSVIVG01000179001 Vitis vinifera HOM05D002634 ORTHO05D003100 4.3e-15 84.0 59 64.4
PGSC0003DMG400038331 Solanum tuberosum HOM05D002634 ORTHO05D003100 3.7e-14 80.9 36 94.4
Sopen12g023530 Solanum pennellii HOM05D002634 ORTHO05D003100 1.4e-13 79.0 101 41.6
Cre12.g527500 Chlamydomonas reinhardtii HOM05D002634 ORTHO05D003100 4.1e-13 77.4 57 52.6
Cfa004076 Carpinus fangiana HOM05D002634 ORTHO05D003100 5.3e-13 77.0 59 59.3
Cfa018035 Carpinus fangiana HOM05D002634 ORTHO05D003100 6.9e-13 76.6 43 79.1
Haze_18089 Corylus avellana HOM05D002634 ORTHO05D003100 6.9e-13 76.6 43 79.1
Solyc12g049100.3 Solanum lycopersicum HOM05D002634 ORTHO05D003100 9.1e-13 76.3 101 39.6
Sopen12g030510 Solanum pennellii HOM05D002634 ORTHO05D003100 3.4e-12 74.3 35 91.4
vmacro21472 Vaccinium macrocarpon HOM05D002634 ORTHO05D003100 4.5e-12 73.9 41 75.6
CSS0010477 Camellia sinensis var. sinensis HOM05D002634 ORTHO05D003100 5.9e-12 73.6 43 72.1
HanXRQChr14g0449681 Helianthus annuus HOM05D002634 ORTHO05D003100 5.9e-12 73.6 59 54.2
Dinv35913 Davidia involucrata HOM05D002634 ORTHO05D003100 1.0e-11 72.8 41 75.6
Dinv39256 Davidia involucrata HOM05D002634 ORTHO05D003100 1.0e-11 72.8 41 75.6
FvH4_2g33540 Fragaria vesca HOM05D002634 ORTHO05D003100 1.0e-11 72.8 59 52.5
Rhsim06G0058000 Rhododendron simsii HOM05D002634 ORTHO05D003100 1.3e-11 72.4 41 73.2
Glyma.17G165702 Glycine max HOM05D002634 ORTHO05D003100 1.7e-11 72.0 43 67.4
FAN15G1883 Fragaria x ananassa HOM05D002634 ORTHO05D003100 2.2e-11 71.6 40 72.5
Hund05323 Selenicereus undatus HOM05D002634 ORTHO05D003100 2.2e-11 71.6 40 72.5
BcaB04g20066 Brassica carinata HOM05D002634 ORTHO05D003100 2.9e-11 71.2 40 75.0
Mapoly0104s0042 Marchantia polymorpha HOM05D002634 ORTHO05D003100 2.9e-11 71.2 43 69.8
BcaC04g23207 Brassica carinata HOM05D002634 ORTHO05D003100 3.8e-11 70.9 40 72.5
A09p09440 Brassica napus HOM05D002634 ORTHO05D003100 3.8e-11 70.9 40 72.5
C09p11120 Brassica napus HOM05D002634 ORTHO05D003100 3.8e-11 70.9 40 72.5
BolC9t54001H Brassica oleracea HOM05D002634 ORTHO05D003100 3.8e-11 70.9 40 72.5
BraA09t36593Z Brassica rapa HOM05D002634 ORTHO05D003100 3.8e-11 70.9 40 72.5
Potri.007G050100 Populus trichocarpa HOM05D002634 ORTHO05D003100 5.0e-11 70.5 40 75.0
Sabra07G0044500 Salix brachista HOM05D002634 ORTHO05D003100 5.0e-11 70.5 40 75.0
ATR0041G007 Amborella trichopoda HOM05D002634 ORTHO05D003100 6.5e-11 70.1 40 72.5
AUR62003945 Chenopodium quinoa HOM05D002634 ORTHO05D003100 6.5e-11 70.1 39 74.4
AUR62038259 Chenopodium quinoa HOM05D002634 ORTHO05D003100 6.5e-11 70.1 39 74.4
Solyc12g088540.3 Solanum lycopersicum HOM05D002634 ORTHO05D003100 6.5e-11 70.1 35 88.6
CiPaw.16G035100 Carya illinoinensis HOM05D002634 ORTHO05D003100 8.5e-11 69.7 39 76.9
FvH4_1g16940 Fragaria vesca HOM05D002634 ORTHO05D003100 8.5e-11 69.7 39 74.4
FAN19G3064 Fragaria x ananassa HOM05D002634 ORTHO05D003100 8.5e-11 69.7 39 74.4
FAN23G0361 Fragaria x ananassa HOM05D002634 ORTHO05D003100 8.5e-11 69.7 39 74.4
FAN26G0639 Fragaria x ananassa HOM05D002634 ORTHO05D003100 8.5e-11 69.7 39 74.4
FAN28G0371 Fragaria x ananassa HOM05D002634 ORTHO05D003100 8.5e-11 69.7 39 74.4
PSO210G0654 Papaver somniferum HOM05D002634 ORTHO05D003100 8.5e-11 69.7 38 76.3
Phvul.003G239000 Phaseolus vulgaris HOM05D002634 ORTHO05D003100 8.5e-11 69.7 39 74.4
Prupe.6G226500 Prunus persica HOM05D002634 ORTHO05D003100 8.5e-11 69.7 39 74.4
RcHm_v2.0_Chr2g0107021 Rosa chinensis HOM05D002634 ORTHO05D003100 8.5e-11 69.7 39 74.4
Sc02g0007620 Simmondsia chinensis HOM05D002634 ORTHO05D003100 8.5e-11 69.7 37 75.7
Cpa.g.sc6.77 Carica papaya HOM05D002634 ORTHO05D003100 1.1e-10 69.3 39 74.4
Ciclev10025285m.g Citrus clementina HOM05D002634 ORTHO05D003100 1.1e-10 69.3 39 74.4
Aa31LG1G15870 Aethionema arabicum HOM05D002634 ORTHO05D003100 1.4e-10 68.9 39 71.8
Ca_13940_v3 Cicer arietinum L. HOM05D002634 ORTHO05D003100 1.4e-10 68.9 40 72.5
FAN24G2212 Fragaria x ananassa HOM05D002634 ORTHO05D003100 1.4e-10 68.9 39 71.8
Hma1.2p1_0240F.1_g100120 Hydrangea macrophylla HOM05D002634 ORTHO05D003100 1.4e-10 68.9 41 73.2
Medtr5g016350 Medicago truncatula HOM05D002634 ORTHO05D003100 1.4e-10 68.9 38 73.7
CANSAT25G1395 Cannabis sativa HOM05D002634 ORTHO05D003100 1.9e-10 68.6 39 71.8
COL.COLO4_11505 Corchorus olitorius HOM05D002634 ORTHO05D003100 1.9e-10 68.6 39 71.8
Duzib147G0499 Durio zibethinus HOM05D002634 ORTHO05D003100 1.9e-10 68.6 39 71.8
MD02G1179800 Malus domestica HOM05D002634 ORTHO05D003100 1.9e-10 68.6 39 74.4
Thecc.01G065500 Theobroma cacao HOM05D002634 ORTHO05D003100 1.9e-10 68.6 39 71.8
AT5G67320 Arabidopsis thaliana HOM05D002634 ORTHO05D003100 2.5e-10 68.2 38 73.7
Migut.C00519 Erythranthe guttata HOM05D002634 ORTHO05D003100 2.5e-10 68.2 39 71.8
Thhalv10003834m.g Eutrema salsugineum HOM05D002634 ORTHO05D003100 2.5e-10 68.2 38 73.7
Pp3c13_5760 Physcomitrium patens HOM05D002634 ORTHO05D003100 2.5e-10 68.2 40 70.0
SEGI_04363 Sequoiadendron giganteum HOM05D002634 ORTHO05D003100 2.5e-10 68.2 40 70.0
PGSC0003DMG400043199 Solanum tuberosum HOM05D002634 ORTHO05D003100 2.5e-10 68.2 33 84.8
Zm00001eb419800 Zea mays HOM05D002634 ORTHO05D003100 2.5e-10 68.2 40 70.0
CARHR280290 Cardamine hirsuta HOM05D002634 ORTHO05D003100 3.2e-10 67.8 39 71.8
ClCG01G017150 Citrullus lanatus HOM05D002634 ORTHO05D003100 3.2e-10 67.8 38 73.7
CsaV3_6G043670 Cucumis sativus L. HOM05D002634 ORTHO05D003100 3.2e-10 67.8 38 73.7
Eucgr.I00742 Eucalyptus grandis HOM05D002634 ORTHO05D003100 3.2e-10 67.8 38 73.7
Gohir.A11G047800 Gossypium hirsutum HOM05D002634 ORTHO05D003100 3.2e-10 67.8 39 71.8
Gohir.D11G051400 Gossypium hirsutum HOM05D002634 ORTHO05D003100 3.2e-10 67.8 39 71.8
Gorai.007G055800 Gossypium raimondii HOM05D002634 ORTHO05D003100 3.2e-10 67.8 39 71.8
Potri.005G144400 Populus trichocarpa HOM05D002634 ORTHO05D003100 3.2e-10 67.8 38 73.7
Hund16370 Selenicereus undatus HOM05D002634 ORTHO05D003100 3.2e-10 67.8 38 73.7
TAR376G0230 Trochodendron aralioides HOM05D002634 ORTHO05D003100 3.2e-10 67.8 39 71.8
CSS0042779 Camellia sinensis var. sinensis HOM05D002634 ORTHO05D003100 4.2e-10 67.4 38 73.7
Lj2g0012944 Lotus japonicus HOM05D002634 ORTHO05D003100 4.2e-10 67.4 38 73.7
TWI09G1405 Tripterygium wilfordii HOM05D002634 ORTHO05D003100 4.2e-10 67.4 41 68.3
Sp2g29340 Schrenkiella parvula HOM05D002634 ORTHO05D003100 5.5e-10 67.0 38 71.1
SMO118G0254 Selaginella moellendorffii HOM05D002634 ORTHO05D003100 5.5e-10 67.0 40 67.5
Gohir.A02G154600 Gossypium hirsutum HOM05D002634 ORTHO05D003100 7.2e-10 66.6 38 71.1
Gohir.D03G025900 Gossypium hirsutum HOM05D002634 ORTHO05D003100 7.2e-10 66.6 38 71.1
Gorai.003G027600 Gossypium raimondii HOM05D002634 ORTHO05D003100 7.2e-10 66.6 38 71.1
AL8G44010 Arabidopsis lyrata HOM05D002634 ORTHO05D003100 9.4e-10 66.2 37 73.0
Lalb_Chr09g0334001 Lupinus albus HOM05D002634 ORTHO05D003100 9.4e-10 66.2 40 70.0
Medtr5g016370 Medicago truncatula HOM05D002634 ORTHO05D003100 9.4e-10 66.2 38 68.4
HPP92_020480 Vanilla planifolia HOM05D002634 ORTHO05D003100 9.4e-10 66.2 38 71.1
Lalb_Chr16g0388841 Lupinus albus HOM05D002634 ORTHO05D003100 1.2e-09 65.9 59 49.2
PGR004G2669 Punica granatum HOM05D002634 ORTHO05D003100 1.6e-09 65.5 37 73.0
TPR.G23895 Trifolium pratense HOM05D002634 ORTHO05D003100 1.6e-09 65.5 38 71.1
Haze_15337 Corylus avellana HOM05D002634 ORTHO05D003100 2.1e-09 65.1 48 60.4
Os07g0405100 Oryza sativa ssp. japonica HOM05D002634 ORTHO05D003100 2.1e-09 65.1 38 68.4
VMungo1309G3030 Vigna mungo HOM05D002634 ORTHO05D003100 2.1e-09 65.1 41 70.7
CiPaw.01G009600 Carya illinoinensis HOM05D002634 ORTHO05D003100 2.7e-09 64.7 37 70.3
EL10Ac6g15682 Beta vulgaris HOM05D002634 ORTHO05D003100 3.6e-09 64.3 38 71.1
Sed0022856 Sechium edule HOM05D002634 ORTHO05D003100 3.6e-09 64.3 36 72.2
CANSAT25G0169 Cannabis sativa HOM05D002634 ORTHO05D003100 4.7e-09 63.9 34 76.5
Cc07_g06500 Coffea canephora HOM05D002634 ORTHO05D003100 4.7e-09 63.9 36 72.2
Nitab4.5_0000838g0220 Nicotiana tabacum HOM05D002634 ORTHO05D003100 4.7e-09 63.9 34 79.4
MD15G1075300 Malus domestica HOM05D002634 ORTHO05D003100 6.1e-09 63.5 36 75.0
PGSC0003DMG400042597 Solanum tuberosum HOM05D002634 ORTHO05D003100 6.1e-09 63.5 39 74.4
Phvul.009G068800 Phaseolus vulgaris HOM05D002634 ORTHO05D003100 7.9e-09 63.2 41 68.3
Atru.chr3.237 Acer truncatum HOM05D002634 ORTHO05D003100 1.0e-08 62.8 37 67.6
Phvul.002G014600 Phaseolus vulgaris HOM05D002634 ORTHO05D003100 1.0e-08 62.8 33 78.8
GSVIVG01009402001 Vitis vinifera HOM05D002634 ORTHO05D003100 1.0e-08 62.8 70 41.4
Peaxi162Scf00160g00029 Petunia axillaris HOM05D002634 ORTHO05D003100 1.4e-08 62.4 34 79.4
Sed0007301 Sechium edule HOM05D002634 ORTHO05D003100 1.4e-08 62.4 37 70.3
Zm00001eb088250 Zea mays HOM05D002634 ORTHO05D003100 1.4e-08 62.4 38 68.4
Cc10_g05270 Coffea canephora HOM05D002634 ORTHO05D003100 1.8e-08 62.0 34 76.5
QL02p003120 Quercus lobata HOM05D002634 ORTHO05D003100 1.8e-08 62.0 36 72.2
QL03p022872 Quercus lobata HOM05D002634 ORTHO05D003100 1.8e-08 62.0 36 72.2
Migut.N02755 Erythranthe guttata HOM05D002634 ORTHO05D003100 2.3e-08 61.6 39 61.5
Migut.O00600 Erythranthe guttata HOM05D002634 ORTHO05D003100 2.3e-08 61.6 39 61.5
Sopen05g009550 Solanum pennellii HOM05D002634 ORTHO05D003100 2.3e-08 61.6 31 83.9
Prupe.1G428200 Prunus persica HOM05D002634 ORTHO05D003100 3.0e-08 61.2 34 76.5
TWI73G0945 Tripterygium wilfordii HOM05D002634 ORTHO05D003100 3.0e-08 61.2 39 66.7
Aqoxy5G01132 Aquilegia oxysepala HOM05D002634 ORTHO05D003100 3.9e-08 60.8 34 73.5
Medtr4g095058 Medicago truncatula HOM05D002634 ORTHO05D003100 6.7e-08 60.1 34 73.5
Dinv26878 Davidia involucrata HOM05D002634 ORTHO05D003100 8.8e-08 59.7 38 71.1
Glyma.04G043300 Glycine max HOM05D002634 ORTHO05D003100 8.8e-08 59.7 38 68.4
Duzib264G1043 Durio zibethinus HOM05D002634 ORTHO05D003100 1.1e-07 59.3 34 70.6
Psat2g169320 Pisum sativum HOM05D002634 ORTHO05D003100 1.1e-07 59.3 34 64.7
Carub.0008s2717 Capsella rubella HOM05D002634 ORTHO05D003100 2.0e-07 58.5 32 75.0
Lalb_Chr16g0378751 Lupinus albus HOM05D002634 ORTHO05D003100 2.0e-07 58.5 37 64.9
arahy.Tifrunner.gnm1.ann1.H8DGBI Arachis hypogaea HOM05D002634 ORTHO05D003100 3.3e-07 57.8 38 63.2
MCO02G223 Micromonas commoda HOM05D002634 ORTHO05D003100 3.3e-07 57.8 36 63.9
Oeu011602.1 Olea europaea HOM05D002634 ORTHO05D003100 3.3e-07 57.8 32 71.9
Actinidia08243 Actinidia chinensis HOM05D002634 ORTHO05D003100 5.7e-07 57.0 34 70.6
arahy.Tifrunner.gnm1.ann1.8C3BXP Arachis hypogaea HOM05D002634 ORTHO05D003100 5.7e-07 57.0 33 69.7
arahy.Tifrunner.gnm1.ann1.KSX8X1 Arachis hypogaea HOM05D002634 ORTHO05D003100 5.7e-07 57.0 33 69.7
TPR.G26905 Trifolium pratense HOM05D002634 ORTHO05D003100 7.4e-07 56.6 33 66.7
Lalb_Chr05g0226131 Lupinus albus HOM05D002634 ORTHO05D003100 1.7e-06 55.5 38 60.5
Lalb_Chr08g0245421 Lupinus albus HOM05D002634 ORTHO05D003100 2.2e-06 55.1 39 61.5
DCAR_025494 Daucus carota HOM05D002634 ORTHO05D003100 4.8e-06 53.9 37 62.2
PRCOL_00000660 Prasinoderma coloniale HOM05D002634 ORTHO05D003100 8.2e-06 53.1 42 47.6


User provided reference genes

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